17 homologs were found in PanDaTox collection
for query gene YpsIP31758_3307 on replicon NC_009708
Organism: Yersinia pseudotuberculosis IP 31758



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_010465  YPK_3438  YcfA family protein  100 
 
 
66 aa  133  7.000000000000001e-31  Yersinia pseudotuberculosis YPIII  Bacteria  normal  n/a   
 
 
-
 
NC_010159  YpAngola_A0971  hypothetical protein  100 
 
 
66 aa  133  7.000000000000001e-31  Yersinia pestis Angola  Bacteria  normal  normal 
 
 
-
 
NC_009708  YpsIP31758_3307  hypothetical protein  100 
 
 
66 aa  133  7.000000000000001e-31  Yersinia pseudotuberculosis IP 31758  Bacteria  normal  n/a   
 
 
-
 
NC_011071  Smal_2546  YcfA family protein  46.03 
 
 
60 aa  54.7  0.0000004  Stenotrophomonas maltophilia R551-3  Bacteria  normal  0.163149  normal 
 
 
-
 
NC_009832  Spro_2932  YcfA family protein  45.31 
 
 
60 aa  53.5  0.000001  Serratia proteamaculans 568  Bacteria  normal  normal 
 
 
-
 
NC_007643  Rru_A1739  hypothetical protein  36.92 
 
 
64 aa  48.1  0.00004  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  0.650653  n/a   
 
 
-
 
NC_007973  Rmet_1077  YcfA-like protein  36.51 
 
 
59 aa  46.6  0.0001  Cupriavidus metallidurans CH34  Bacteria  normal  0.615888  normal  0.167749 
 
 
-
 
NC_007778  RPB_2021  YcfA-like  38.71 
 
 
64 aa  45.1  0.0003  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal  0.210595 
 
 
-
 
NC_008309  HS_1395  hypothetical protein  35.48 
 
 
61 aa  43.1  0.001  Haemophilus somnus 129PT  Bacteria  decreased coverage  0.000000000571256  n/a   
 
 
-
 
NC_007650  BTH_II1999  hypothetical protein  34.92 
 
 
59 aa  43.1  0.001  Burkholderia thailandensis E264  Bacteria  hitchhiker  0.00856081  n/a   
 
 
-
 
NC_007778  RPB_2527  YcfA-like  34.92 
 
 
65 aa  42  0.002  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal 
 
 
-
 
NC_011365  Gdia_2674  YcfA family protein  36.92 
 
 
60 aa  42.7  0.002  Gluconacetobacter diazotrophicus PAl 5  Bacteria  normal  0.232678  normal  0.169693 
 
 
-
 
NC_010681  Bphyt_3798  YcfA family protein  34.38 
 
 
60 aa  42  0.003  Burkholderia phytofirmans PsJN  Bacteria  normal  normal 
 
 
-
 
NC_011901  Tgr7_2075  YcfA family protein  37.88 
 
 
61 aa  42  0.003  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  0.547184  n/a   
 
 
-
 
NC_008781  Pnap_2644  YcfA family protein  33.33 
 
 
67 aa  41.2  0.005  Polaromonas naphthalenivorans CJ2  Bacteria  normal  0.700333  normal 
 
 
-
 
NC_004578  PSPTO_1634  hypothetical protein  31.75 
 
 
60 aa  41.2  0.005  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_010553  BamMC406_6578  YcfA family protein  31.82 
 
 
64 aa  40.4  0.009  Burkholderia ambifaria MC40-6  Bacteria  hitchhiker  0.0000196737  normal 
 
 
-
 
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