More than 300 homologs were found in PanDaTox collection
for query gene YpsIP31758_2084 on replicon NC_009708
Organism: Yersinia pseudotuberculosis IP 31758



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_009708  YpsIP31758_2084  DNA-binding heavy metal response regulator  100 
 
 
230 aa  461  1e-129  Yersinia pseudotuberculosis IP 31758  Bacteria  hitchhiker  0.000771382  n/a   
 
 
-
 
NC_010465  YPK_2192  two component heavy metal response transcriptional regulator  99.57 
 
 
230 aa  459  9.999999999999999e-129  Yersinia pseudotuberculosis YPIII  Bacteria  normal  n/a   
 
 
-
 
NC_010159  YpAngola_A2480  DNA-binding heavy metal response regulator  99.13 
 
 
230 aa  456  1e-127  Yersinia pestis Angola  Bacteria  hitchhiker  0.00000187636  normal  0.518539 
 
 
-
 
NC_010322  PputGB1_0836  two component heavy metal response transcriptional regulator  69.64 
 
 
224 aa  310  9e-84  Pseudomonas putida GB-1  Bacteria  normal  0.368612  normal 
 
 
-
 
NC_010501  PputW619_4391  two component heavy metal response transcriptional regulator  68.75 
 
 
224 aa  307  8e-83  Pseudomonas putida W619  Bacteria  normal  normal  0.593256 
 
 
-
 
NC_007492  Pfl01_4663  two component heavy metal response transcriptional regulator  67.86 
 
 
225 aa  305  4.0000000000000004e-82  Pseudomonas fluorescens Pf0-1  Bacteria  normal  0.180214  normal  0.242183 
 
 
-
 
NC_004578  PSPTO_1307  DNA-binding heavy metal response regulator  66.96 
 
 
225 aa  302  3.0000000000000004e-81  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.150056  n/a   
 
 
-
 
NC_007005  Psyr_1127  heavy metal response regulator  66.07 
 
 
225 aa  298  3e-80  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  0.294376  normal  0.216529 
 
 
-
 
NC_009656  PSPA7_3892  putative two-component response regulator  66.07 
 
 
229 aa  297  8e-80  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_008463  PA14_45880  putative two-component response regulator  66.22 
 
 
229 aa  295  5e-79  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal  0.954426 
 
 
-
 
NC_008786  Veis_0344  two component heavy metal response transcriptional regulator  64.29 
 
 
231 aa  290  1e-77  Verminephrobacter eiseniae EF01-2  Bacteria  normal  normal 
 
 
-
 
NC_010625  Bphy_6519  two component heavy metal response transcriptional regulator  62.83 
 
 
228 aa  278  5e-74  Burkholderia phymatum STM815  Bacteria  normal  normal  0.0435386 
 
 
-
 
NC_010676  Bphyt_5873  two component heavy metal response transcriptional regulator, winged helix family  62.39 
 
 
228 aa  278  5e-74  Burkholderia phytofirmans PsJN  Bacteria  normal  0.247228  normal 
 
 
-
 
NC_007952  Bxe_B2069  two component heavy metal response transcriptional regulator  62.39 
 
 
228 aa  278  5e-74  Burkholderia xenovorans LB400  Bacteria  normal  0.0102482  normal 
 
 
-
 
NC_010515  Bcenmc03_4106  two component heavy metal response transcriptional regulator  60.71 
 
 
223 aa  278  7e-74  Burkholderia cenocepacia MC0-3  Bacteria  normal  normal  0.971428 
 
 
-
 
NC_010002  Daci_1091  two component heavy metal response transcriptional regulator  61.67 
 
 
232 aa  276  2e-73  Delftia acidovorans SPH-1  Bacteria  normal  normal 
 
 
-
 
NC_008061  Bcen_4757  two component heavy metal response transcriptional regulator  60.27 
 
 
223 aa  276  2e-73  Burkholderia cenocepacia AU 1054  Bacteria  normal  0.0878196  n/a   
 
 
-
 
NC_008543  Bcen2424_3410  two component heavy metal response transcriptional regulator  60.27 
 
 
223 aa  276  2e-73  Burkholderia cenocepacia HI2424  Bacteria  normal  normal 
 
 
-
 
NC_008391  Bamb_5186  two component heavy metal response transcriptional regulator  59.38 
 
 
223 aa  274  1.0000000000000001e-72  Burkholderia ambifaria AMMD  Bacteria  normal  normal 
 
 
-
 
NC_010552  BamMC406_3349  two component heavy metal response transcriptional regulator  59.38 
 
 
223 aa  273  2.0000000000000002e-72  Burkholderia ambifaria MC40-6  Bacteria  normal  normal 
 
 
-
 
NC_008825  Mpe_A1629  two-component response regulator  61.95 
 
 
228 aa  271  5.000000000000001e-72  Methylibium petroleiphilum PM1  Bacteria  normal  normal  0.128663 
 
 
-
 
NC_007492  Pfl01_3379  two component heavy metal response transcriptional regulator  58.67 
 
 
223 aa  270  2e-71  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal 
 
 
-
 
NC_003296  RSp0489  response regulator for cobalt zinc cadmium resistance transcription regulator protein  60.54 
 
 
224 aa  269  2.9999999999999997e-71  Ralstonia solanacearum GMI1000  Bacteria  normal  normal 
 
 
-
 
NC_007347  Reut_A1815  two component heavy metal response transcriptional regulator  58.67 
 
 
224 aa  268  4e-71  Ralstonia eutropha JMP134  Bacteria  normal  0.275759  n/a   
 
 
-
 
NC_010676  Bphyt_5224  two component heavy metal response transcriptional regulator, winged helix family  58.93 
 
 
225 aa  268  8e-71  Burkholderia phytofirmans PsJN  Bacteria  normal  0.57611  normal 
 
 
-
 
NC_007511  Bcep18194_B2768  two component heavy metal response transcriptional regulator  60.27 
 
 
223 aa  266  2e-70  Burkholderia sp. 383  Bacteria  normal  normal 
 
 
-
 
NC_011992  Dtpsy_2215  two component heavy metal response transcriptional regulator, winged helix family  62.01 
 
 
228 aa  265  5e-70  Acidovorax ebreus TPSY  Bacteria  normal  n/a   
 
 
-
 
NC_012791  Vapar_3559  two component heavy metal response transcriptional regulator, winged helix family  59.56 
 
 
225 aa  265  5e-70  Variovorax paradoxus S110  Bacteria  normal  0.710681  n/a   
 
 
-
 
NC_007952  Bxe_B1389  two component heavy metal response transcriptional regulator  59.01 
 
 
225 aa  264  7e-70  Burkholderia xenovorans LB400  Bacteria  normal  0.717226  normal  0.091392 
 
 
-
 
NC_010070  Bmul_6295  two component heavy metal response transcriptional regulator  58.04 
 
 
223 aa  264  7e-70  Burkholderia multivorans ATCC 17616  Bacteria  normal  0.803537  normal  0.219108 
 
 
-
 
NC_010002  Daci_0451  two component heavy metal response transcriptional regulator  59.82 
 
 
230 aa  263  2e-69  Delftia acidovorans SPH-1  Bacteria  normal  normal 
 
 
-
 
NC_010086  Bmul_4315  two component heavy metal response transcriptional regulator  59.47 
 
 
232 aa  263  2e-69  Burkholderia multivorans ATCC 17616  Bacteria  normal  0.767231  normal  0.644171 
 
 
-
 
NC_011667  Tmz1t_2388  heavy metal response regulator  59.73 
 
 
228 aa  262  3e-69  Thauera sp. MZ1T  Bacteria  decreased coverage  0.000142984  normal  0.119734 
 
 
-
 
NC_011662  Tmz1t_2101  two component heavy metal response transcriptional regulator, winged helix family  59.73 
 
 
228 aa  262  3e-69  Thauera sp. MZ1T  Bacteria  normal  n/a   
 
 
-
 
NC_007005  Psyr_3374  heavy metal response regulator  58.15 
 
 
229 aa  262  3e-69  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal 
 
 
-
 
NC_010552  BamMC406_4186  two component heavy metal response transcriptional regulator  59.91 
 
 
231 aa  262  3e-69  Burkholderia ambifaria MC40-6  Bacteria  normal  0.24384  normal  0.790942 
 
 
-
 
NC_008391  Bamb_3708  two component heavy metal response transcriptional regulator  59.91 
 
 
231 aa  262  3e-69  Burkholderia ambifaria AMMD  Bacteria  normal  normal 
 
 
-
 
NC_010322  PputGB1_1699  two component heavy metal response transcriptional regulator  58.59 
 
 
226 aa  262  3e-69  Pseudomonas putida GB-1  Bacteria  normal  hitchhiker  0.00419772 
 
 
-
 
NC_004578  PSPTO_3603  DNA-binding heavy metal response regulator  58.15 
 
 
229 aa  262  4e-69  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.203952  n/a   
 
 
-
 
NC_010515  Bcenmc03_3227  two component heavy metal response transcriptional regulator  58.87 
 
 
231 aa  262  4e-69  Burkholderia cenocepacia MC0-3  Bacteria  normal  0.303749  normal  0.0627816 
 
 
-
 
NC_008061  Bcen_4076  two component heavy metal response transcriptional regulator  58.87 
 
 
231 aa  262  4e-69  Burkholderia cenocepacia AU 1054  Bacteria  normal  0.0105833  n/a   
 
 
-
 
NC_008543  Bcen2424_4290  two component heavy metal response transcriptional regulator  58.87 
 
 
231 aa  262  4e-69  Burkholderia cenocepacia HI2424  Bacteria  normal  normal 
 
 
-
 
NC_007005  Psyr_1497  heavy metal response regulator  58.59 
 
 
228 aa  261  4.999999999999999e-69  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal 
 
 
-
 
NC_009512  Pput_3584  two component heavy metal response transcriptional regulator  58.59 
 
 
226 aa  261  6e-69  Pseudomonas putida F1  Bacteria  normal  normal 
 
 
-
 
NC_007511  Bcep18194_B1729  two component heavy metal response transcriptional regulator  58.87 
 
 
231 aa  261  8e-69  Burkholderia sp. 383  Bacteria  normal  normal 
 
 
-
 
NC_007908  Rfer_0422  two component heavy metal response transcriptional regulator  60.71 
 
 
227 aa  261  8e-69  Rhodoferax ferrireducens T118  Bacteria  normal  n/a   
 
 
-
 
NC_007298  Daro_2259  two component heavy metal response transcriptional regulator  59.38 
 
 
225 aa  261  8.999999999999999e-69  Dechloromonas aromatica RCB  Bacteria  normal  normal 
 
 
-
 
NC_008463  PA14_27810  putative two-component response regulator  58.15 
 
 
226 aa  261  8.999999999999999e-69  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal 
 
 
-
 
NC_010512  Bcenmc03_6987  two component heavy metal response transcriptional regulator  58.93 
 
 
225 aa  260  1e-68  Burkholderia cenocepacia MC0-3  Bacteria  normal  0.67799  normal  0.586494 
 
 
-
 
NC_011662  Tmz1t_3985  two component heavy metal response transcriptional regulator, winged helix family  58.04 
 
 
226 aa  260  1e-68  Thauera sp. MZ1T  Bacteria  normal  n/a   
 
 
-
 
NC_007973  Rmet_1751  two component heavy metal response transcriptional regulator  56.7 
 
 
224 aa  260  1e-68  Cupriavidus metallidurans CH34  Bacteria  normal  normal  0.0784096 
 
 
-
 
NC_008060  Bcen_1505  two component heavy metal response transcriptional regulator  58.93 
 
 
225 aa  260  1e-68  Burkholderia cenocepacia AU 1054  Bacteria  normal  0.228186  n/a   
 
 
-
 
NC_008544  Bcen2424_6324  two component heavy metal response transcriptional regulator  58.93 
 
 
225 aa  260  1e-68  Burkholderia cenocepacia HI2424  Bacteria  normal  0.313253  normal 
 
 
-
 
NC_002947  PP_2158  two component heavy metal response transcriptional regulator  58.59 
 
 
226 aa  259  2e-68  Pseudomonas putida KT2440  Bacteria  normal  0.144347  normal  0.036827 
 
 
-
 
NC_011662  Tmz1t_4055  two component heavy metal response transcriptional regulator, winged helix family  58.48 
 
 
226 aa  259  2e-68  Thauera sp. MZ1T  Bacteria  normal  n/a   
 
 
-
 
NC_010084  Bmul_2337  two component heavy metal response transcriptional regulator  58.04 
 
 
227 aa  259  2e-68  Burkholderia multivorans ATCC 17616  Bacteria  normal  normal 
 
 
-
 
NC_010623  Bphy_3962  two component heavy metal response transcriptional regulator  56.7 
 
 
225 aa  259  2e-68  Burkholderia phymatum STM815  Bacteria  normal  normal 
 
 
-
 
NC_010557  BamMC406_5744  two component heavy metal response transcriptional regulator  58.04 
 
 
225 aa  259  2e-68  Burkholderia ambifaria MC40-6  Bacteria  normal  0.0360294  normal  0.749662 
 
 
-
 
NC_003296  RSp0655  two component response regulator transcription regulator protein  59.47 
 
 
228 aa  259  3e-68  Ralstonia solanacearum GMI1000  Bacteria  normal  normal  0.81937 
 
 
-
 
NC_007298  Daro_2474  heavy metal response regulator  57.33 
 
 
223 aa  259  3e-68  Dechloromonas aromatica RCB  Bacteria  normal  normal 
 
 
-
 
NC_010682  Rpic_1760  two component heavy metal response transcriptional regulator, winged helix family  55.95 
 
 
225 aa  258  5.0000000000000005e-68  Ralstonia pickettii 12J  Bacteria  normal  0.133831  normal  0.402692 
 
 
-
 
NC_008782  Ajs_1236  two component heavy metal response transcriptional regulator  59.55 
 
 
219 aa  258  8e-68  Acidovorax sp. JS42  Bacteria  normal  normal 
 
 
-
 
NC_007963  Csal_0102  two component heavy metal response transcriptional regulator  57.59 
 
 
223 aa  256  1e-67  Chromohalobacter salexigens DSM 3043  Bacteria  normal  0.753235  n/a   
 
 
-
 
NC_008392  Bamb_5988  two component heavy metal response transcriptional regulator  58.04 
 
 
225 aa  257  1e-67  Burkholderia ambifaria AMMD  Bacteria  normal  normal 
 
 
-
 
NC_009656  PSPA7_2348  putative two-component response regulator  56.83 
 
 
228 aa  256  2e-67  Pseudomonas aeruginosa PA7  Bacteria  normal  0.804247  n/a   
 
 
-
 
NC_007971  Rmet_5978  regulatory protein CzcR  55.95 
 
 
225 aa  256  2e-67  Cupriavidus metallidurans CH34  Bacteria  hitchhiker  0.0000269255  normal  0.0723212 
 
 
-
 
NC_010501  PputW619_0017  two component heavy metal response transcriptional regulator  57.27 
 
 
225 aa  255  4e-67  Pseudomonas putida W619  Bacteria  normal  normal 
 
 
-
 
NC_010322  PputGB1_0019  two component heavy metal response transcriptional regulator  57.27 
 
 
225 aa  255  4e-67  Pseudomonas putida GB-1  Bacteria  normal  0.593373  normal 
 
 
-
 
NC_007492  Pfl01_0202  two component heavy metal response transcriptional regulator  55.61 
 
 
226 aa  255  4e-67  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal 
 
 
-
 
NC_009512  Pput_0017  two component heavy metal response transcriptional regulator  57.27 
 
 
225 aa  255  4e-67  Pseudomonas putida F1  Bacteria  normal  normal  0.0468746 
 
 
-
 
NC_009483  Gura_1986  two component heavy metal response transcriptional regulator  56.89 
 
 
223 aa  255  4e-67  Geobacter uraniireducens Rf4  Bacteria  normal  0.0566795  n/a   
 
 
-
 
NC_007492  Pfl01_3855  two component heavy metal response transcriptional regulator  56.39 
 
 
226 aa  254  5e-67  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal  0.845216 
 
 
-
 
NC_007511  Bcep18194_B2430  two component heavy metal response transcriptional regulator  57.39 
 
 
227 aa  255  5e-67  Burkholderia sp. 383  Bacteria  normal  normal 
 
 
-
 
NC_010682  Rpic_1780  two component heavy metal response transcriptional regulator, winged helix family  57.27 
 
 
228 aa  255  5e-67  Ralstonia pickettii 12J  Bacteria  normal  0.817023  normal  0.826624 
 
 
-
 
NC_010515  Bcenmc03_3842  two component heavy metal response transcriptional regulator  58.22 
 
 
227 aa  254  6e-67  Burkholderia cenocepacia MC0-3  Bacteria  normal  normal  0.67414 
 
 
-
 
NC_008061  Bcen_4683  two component heavy metal response transcriptional regulator  58.22 
 
 
228 aa  254  6e-67  Burkholderia cenocepacia AU 1054  Bacteria  normal  0.222547  n/a   
 
 
-
 
NC_008543  Bcen2424_3680  two component heavy metal response transcriptional regulator  58.22 
 
 
228 aa  254  6e-67  Burkholderia cenocepacia HI2424  Bacteria  normal  0.224842  normal 
 
 
-
 
NC_010002  Daci_1713  two component heavy metal response transcriptional regulator  56.83 
 
 
227 aa  254  8e-67  Delftia acidovorans SPH-1  Bacteria  normal  normal  0.535279 
 
 
-
 
NC_007953  Bxe_C1381  two component heavy metal response transcriptional regulator  56.76 
 
 
224 aa  254  9e-67  Burkholderia xenovorans LB400  Bacteria  normal  normal  0.961918 
 
 
-
 
NC_002947  PP_5383  two component heavy metal response transcriptional regulator  56.83 
 
 
225 aa  253  1.0000000000000001e-66  Pseudomonas putida KT2440  Bacteria  normal  normal  0.651671 
 
 
-
 
NC_007951  Bxe_A2960  two component heavy metal response transcriptional regulator  57.33 
 
 
227 aa  254  1.0000000000000001e-66  Burkholderia xenovorans LB400  Bacteria  normal  normal 
 
 
-
 
NC_012849  Rpic12D_5099  two component heavy metal response transcriptional regulator, winged helix family  56.83 
 
 
228 aa  254  1.0000000000000001e-66  Ralstonia pickettii 12D  Bacteria  normal  normal  0.0773075 
 
 
-
 
NC_010070  Bmul_6173  two component heavy metal response transcriptional regulator  58.22 
 
 
228 aa  253  2.0000000000000002e-66  Burkholderia multivorans ATCC 17616  Bacteria  normal  normal  0.400074 
 
 
-
 
NC_010682  Rpic_1841  two component heavy metal response transcriptional regulator, winged helix family  56.39 
 
 
228 aa  253  2.0000000000000002e-66  Ralstonia pickettii 12J  Bacteria  normal  0.99331  hitchhiker  0.00000222676 
 
 
-
 
NC_010681  Bphyt_1510  two component heavy metal response transcriptional regulator, winged helix family  57.02 
 
 
227 aa  252  3e-66  Burkholderia phytofirmans PsJN  Bacteria  normal  normal 
 
 
-
 
NC_010501  PputW619_5178  two component heavy metal response transcriptional regulator  57.4 
 
 
225 aa  252  3e-66  Pseudomonas putida W619  Bacteria  normal  0.341313  normal 
 
 
-
 
NC_012849  Rpic12D_5335  two component heavy metal response transcriptional regulator, winged helix family  56.39 
 
 
228 aa  252  3e-66  Ralstonia pickettii 12D  Bacteria  normal  0.733276  normal  0.970872 
 
 
-
 
NC_010682  Rpic_1718  two component heavy metal response transcriptional regulator, winged helix family  56.39 
 
 
228 aa  252  3e-66  Ralstonia pickettii 12J  Bacteria  normal  0.348336  normal 
 
 
-
 
NC_007348  Reut_B3961  heavy metal response regulator  56.76 
 
 
229 aa  251  4.0000000000000004e-66  Ralstonia eutropha JMP134  Bacteria  decreased coverage  0.00889091  n/a   
 
 
-
 
NC_007650  BTH_II1376  DNA-binding response regulator IrlR  58.04 
 
 
229 aa  252  4.0000000000000004e-66  Burkholderia thailandensis E264  Bacteria  normal  0.498923  n/a   
 
 
-
 
NC_004578  PSPTO_0378  DNA-binding heavy metal response regulator  54.91 
 
 
224 aa  251  6e-66  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_010468  EcolC_3075  DNA-binding transcriptional activator CusR  52.84 
 
 
227 aa  251  7e-66  Escherichia coli ATCC 8739  Bacteria  normal  0.204173  normal 
 
 
-
 
CP001637  EcDH1_3058  two component heavy metal response transcriptional regulator, winged helix family  52.84 
 
 
227 aa  251  7e-66  Escherichia coli DH1  Bacteria  normal  n/a   
 
 
-
 
NC_011353  ECH74115_0651  DNA-binding transcriptional activator CusR  52.84 
 
 
227 aa  251  7e-66  Escherichia coli O157:H7 str. EC4115  Bacteria  normal  0.589216  normal 
 
 
-
 
NC_010498  EcSMS35_0588  DNA-binding transcriptional activator CusR  52.84 
 
 
227 aa  251  7e-66  Escherichia coli SMS-3-5  Bacteria  normal  0.372008  normal 
 
 
-
 
NC_009800  EcHS_A0618  DNA-binding transcriptional activator CusR  52.84 
 
 
227 aa  251  7e-66  Escherichia coli HS  Bacteria  hitchhiker  0.000374882  n/a   
 
 
-
 
NC_008463  PA14_64570  two-component response regulator  56.83 
 
 
229 aa  251  8.000000000000001e-66  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal 
 
 
-
 
CP001509  ECD_00532  DNA-binding response regulator in two-component regulatory system with CusS  52.84 
 
 
227 aa  251  9.000000000000001e-66  Escherichia coli BL21(DE3)  Bacteria  normal  n/a   
 
 
-
 
NC_012892  B21_00521  hypothetical protein  52.84 
 
 
227 aa  251  9.000000000000001e-66  Escherichia coli BL21  Bacteria  normal  n/a   
 
 
-
 
NC_009801  EcE24377A_0589  DNA-binding transcriptional activator CusR  52.84 
 
 
227 aa  251  9.000000000000001e-66  Escherichia coli E24377A  Bacteria  normal  0.180273  n/a   
 
 
-
 
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