81 homologs were found in PanDaTox collection
for query gene YPK_2350 on replicon NC_010465
Organism: Yersinia pseudotuberculosis YPIII



Page 1 of 1    << first  < prev  1  next >  last >>   


Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_010465  YPK_2350  TP901 family phage tail tape measure protein  100 
 
 
971 aa  1968    Yersinia pseudotuberculosis YPIII  Bacteria  normal  0.5162  n/a   
 
 
-
 
NC_010465  YPK_2303  TP901 family phage tail tape measure protein  94.03 
 
 
971 aa  1764    Yersinia pseudotuberculosis YPIII  Bacteria  normal  0.841337  n/a   
 
 
-
 
NC_009997  Sbal195_2891  TP901 family phage tail tape measure protein  34.57 
 
 
1216 aa  369  1e-100  Shewanella baltica OS195  Bacteria  normal  normal 
 
 
-
 
NC_011149  SeAg_B2844  phage tail tape measure protein  31.58 
 
 
935 aa  334  6e-90  Salmonella enterica subsp. enterica serovar Agona str. SL483  Bacteria  normal  0.581537  n/a   
 
 
-
 
NC_012917  PC1_3196  phage tail tape measure protein, TP901 family  40.27 
 
 
959 aa  326  1e-87  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  0.112717  n/a   
 
 
-
 
NC_007963  Csal_1375  Phage tail tape measure protein TP901, core region  33.71 
 
 
877 aa  323  9.999999999999999e-87  Chromohalobacter salexigens DSM 3043  Bacteria  normal  n/a   
 
 
-
 
NC_010468  EcolC_2753  TP901 family phage tail tape measure protein  38.97 
 
 
1025 aa  292  2e-77  Escherichia coli ATCC 8739  Bacteria  normal  hitchhiker  0.0000729903 
 
 
-
 
NC_009800  EcHS_A0946  phage tail tape measure protein  40.33 
 
 
1025 aa  290  9e-77  Escherichia coli HS  Bacteria  normal  n/a   
 
 
-
 
NC_011205  SeD_A3027  phage tail tape measure protein  47.88 
 
 
935 aa  278  3e-73  Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853  Bacteria  normal  hitchhiker  0.000444183 
 
 
-
 
NC_010658  SbBS512_E2489  phage tail tape measure protein  38.38 
 
 
1025 aa  271  5e-71  Shigella boydii CDC 3083-94  Bacteria  normal  n/a   
 
 
-
 
NC_009436  Ent638_3478  TP901 family phage tail tape measure protein  28.09 
 
 
809 aa  248  4.9999999999999997e-64  Enterobacter sp. 638  Bacteria  normal  0.790573  normal  0.139413 
 
 
-
 
NC_011353  ECH74115_3026  phage tail tape measure protein, TP901 family  31.39 
 
 
815 aa  245  3e-63  Escherichia coli O157:H7 str. EC4115  Bacteria  normal  normal  0.0149182 
 
 
-
 
NC_010498  EcSMS35_4349  TP901 family phage tail tape measure protein  31.22 
 
 
815 aa  241  5e-62  Escherichia coli SMS-3-5  Bacteria  normal  normal  0.186092 
 
 
-
 
NC_011080  SNSL254_A4387  gp24  31.88 
 
 
813 aa  234  5e-60  Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  normal  normal  0.0182 
 
 
-
 
NC_012917  PC1_2660  phage tail tape measure protein, TP901 family  37.06 
 
 
1032 aa  194  6e-48  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  n/a   
 
 
-
 
NC_011773  BCAH820_4374  phage tail tape measure protein, family, core region  29.38 
 
 
1549 aa  186  2.0000000000000003e-45  Bacillus cereus AH820  Bacteria  n/a    normal 
 
 
-
 
NC_011149  SeAg_B4790  phage tail tape measure protein, family  26.27 
 
 
877 aa  179  2e-43  Salmonella enterica subsp. enterica serovar Agona str. SL483  Bacteria  normal  n/a   
 
 
-
 
NC_009487  SaurJH9_1070  TP901 family phage tail tape measure protein  24.53 
 
 
2066 aa  166  2.0000000000000002e-39  Staphylococcus aureus subsp. aureus JH9  Bacteria  normal  0.917843  n/a   
 
 
-
 
NC_009632  SaurJH1_1091  TP901 family phage tail tape measure protein  24.53 
 
 
2066 aa  166  2.0000000000000002e-39  Staphylococcus aureus subsp. aureus JH1  Bacteria  normal  n/a   
 
 
-
 
NC_009801  EcE24377A_0993  hypothetical protein  32.77 
 
 
361 aa  157  7e-37  Escherichia coli E24377A  Bacteria  normal  0.600478  n/a   
 
 
-
 
NC_010182  BcerKBAB4_5330  TP901 family phage tail tape measure protein  34.08 
 
 
1127 aa  155  2.9999999999999998e-36  Bacillus weihenstephanensis KBAB4  Bacteria  n/a    n/a   
 
 
-
 
NC_008576  Mmc1_1272  TP901 family phage tail tape measure protein  24.9 
 
 
1183 aa  150  8e-35  Magnetococcus sp. MC-1  Bacteria  normal  normal  0.0574053 
 
 
-
 
NC_008576  Mmc1_2805  TP901 family phage tail tape measure protein  25.5 
 
 
1183 aa  144  9.999999999999999e-33  Magnetococcus sp. MC-1  Bacteria  normal  normal 
 
 
-
 
NC_008576  Mmc1_2733  TP901 family phage tail tape measure protein  24.93 
 
 
1183 aa  140  1e-31  Magnetococcus sp. MC-1  Bacteria  normal  0.332181  hitchhiker  0.00107852 
 
 
-
 
NC_008576  Mmc1_2882  TP901 family phage tail tape measure protein  25.23 
 
 
1183 aa  140  1e-31  Magnetococcus sp. MC-1  Bacteria  normal  0.143408  normal  0.327483 
 
 
-
 
NC_012560  Avin_37360  Phage TMP domain-containing protein  24.62 
 
 
1078 aa  140  1e-31  Azotobacter vinelandii DJ  Bacteria  normal  n/a   
 
 
-
 
NC_008576  Mmc1_2034  TP901 family phage tail tape measure protein  25.03 
 
 
1183 aa  139  3.0000000000000003e-31  Magnetococcus sp. MC-1  Bacteria  normal  0.5433  normal  0.337313 
 
 
-
 
NC_008265  CPR_C0004  phage tail tape measure protein, TP901 family, core region domain protein  29.83 
 
 
1178 aa  138  6.0000000000000005e-31  Clostridium perfringens SM101  Bacteria  normal  n/a   
 
 
-
 
NC_007519  Dde_3386  Phage tail tape measure protein TP901, core region  31.43 
 
 
733 aa  138  6.0000000000000005e-31  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  normal  0.576804  n/a   
 
 
-
 
NC_008576  Mmc1_1338  TP901 family phage tail tape measure protein  24.77 
 
 
1183 aa  137  8e-31  Magnetococcus sp. MC-1  Bacteria  normal  normal  0.413563 
 
 
-
 
NC_008576  Mmc1_2562  TP901 family phage tail tape measure protein  24.55 
 
 
1183 aa  137  9.999999999999999e-31  Magnetococcus sp. MC-1  Bacteria  normal  0.881784  normal  0.265945 
 
 
-
 
NC_009801  EcE24377A_0996  hypothetical protein  47.37 
 
 
459 aa  133  2.0000000000000002e-29  Escherichia coli E24377A  Bacteria  normal  n/a   
 
 
-
 
NC_009436  Ent638_1357  phage tail-like protein  33.23 
 
 
550 aa  123  1.9999999999999998e-26  Enterobacter sp. 638  Bacteria  normal  normal 
 
 
-
 
NC_008781  Pnap_3313  TP901 family phage tail tape measure protein  25.85 
 
 
863 aa  120  9.999999999999999e-26  Polaromonas naphthalenivorans CJ2  Bacteria  normal  0.219365  normal 
 
 
-
 
NC_009674  Bcer98_2935  TP901 family phage tail tape measure protein  27.63 
 
 
975 aa  115  3e-24  Bacillus cytotoxicus NVH 391-98  Bacteria  normal  n/a   
 
 
-
 
NC_007650  BTH_II1327  phage-related tail transmembrane protein  34 
 
 
986 aa  115  6e-24  Burkholderia thailandensis E264  Bacteria  normal  n/a   
 
 
-
 
NC_009667  Oant_0888  TP901 family phage tail tape measure protein  35.18 
 
 
757 aa  114  1.0000000000000001e-23  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  0.322682  n/a   
 
 
-
 
NC_003295  RSc1914  phage-related tail transmembrane protein  37.78 
 
 
887 aa  112  4.0000000000000004e-23  Ralstonia solanacearum GMI1000  Bacteria  normal  0.575173  normal  0.748507 
 
 
-
 
NC_011772  BCG9842_B2400  phage protein  31.47 
 
 
1297 aa  107  8e-22  Bacillus cereus G9842  Bacteria  normal  normal 
 
 
-
 
NC_010086  Bmul_4860  putative phage-related tail transmembrane protein  32 
 
 
920 aa  105  4e-21  Burkholderia multivorans ATCC 17616  Bacteria  normal  0.582054  normal  0.698632 
 
 
-
 
NC_010508  Bcenmc03_0181  putative phage-related tail transmembrane protein  32 
 
 
919 aa  105  5e-21  Burkholderia cenocepacia MC0-3  Bacteria  normal  normal 
 
 
-
 
NC_011658  BCAH187_A2248  putative prophage LambdaBa02, tape measure protein  26.84 
 
 
1671 aa  99  4e-19  Bacillus cereus AH187  Bacteria  normal  0.0144482  n/a   
 
 
-
 
NC_007530  GBAA_4082  prophage LambdaBa02, tape measure protein  26.84 
 
 
959 aa  98.6  5e-19  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  0.27862  n/a   
 
 
-
 
NC_005945  BAS3793  prophage LambdaBa02, tape measure protein  26.84 
 
 
959 aa  98.6  5e-19  Bacillus anthracis str. Sterne  Bacteria  normal  n/a   
 
 
-
 
NC_009832  Spro_0859  TP901 family phage tail tape measure protein  28.12 
 
 
701 aa  98.2  6e-19  Serratia proteamaculans 568  Bacteria  normal  0.0227343  hitchhiker  0.00167683 
 
 
-
 
NC_008699  Noca_0550  TP901 family phage tail tape measure protein  28.57 
 
 
969 aa  96.3  3e-18  Nocardioides sp. JS614  Bacteria  normal  n/a   
 
 
-
 
NC_012880  Dd703_2103  hypothetical protein  37.93 
 
 
737 aa  94  1e-17  Dickeya dadantii Ech703  Bacteria  normal  n/a   
 
 
-
 
NC_010717  PXO_01340  phage-related tail protein  39.47 
 
 
956 aa  87.8  9e-16  Xanthomonas oryzae pv. oryzae PXO99A  Bacteria  normal  0.776722  n/a   
 
 
-
 
NC_011725  BCB4264_A2632  phage tail tape measure protein, family  23.81 
 
 
1283 aa  82  0.00000000000005  Bacillus cereus B4264  Bacteria  normal  n/a   
 
 
-
 
NC_013721  HMPREF0424_0994  phage tail tape measure protein, TP901 family  26.9 
 
 
1173 aa  81.3  0.00000000000009  Gardnerella vaginalis 409-05  Bacteria  n/a    normal 
 
 
-
 
NC_008781  Pnap_2248  TP901 family phage tail tape measure protein  31.49 
 
 
914 aa  79.7  0.0000000000002  Polaromonas naphthalenivorans CJ2  Bacteria  normal  0.678247  hitchhiker  0.00399711 
 
 
-
 
NC_007778  RPB_3315  Phage tail tape measure protein  25.08 
 
 
858 aa  79.3  0.0000000000003  Rhodopseudomonas palustris HaA2  Bacteria  normal  0.0157558  normal  0.305468 
 
 
-
 
NC_011071  Smal_0884  phage tail tape measure protein, TP901 family  34.29 
 
 
823 aa  78.6  0.0000000000006  Stenotrophomonas maltophilia R551-3  Bacteria  normal  0.0603938  normal 
 
 
-
 
NC_013441  Gbro_1175  phage tail tape measure protein, TP901 family  28.88 
 
 
1343 aa  78.2  0.0000000000007  Gordonia bronchialis DSM 43247  Bacteria  normal  n/a   
 
 
-
 
NC_008726  Mvan_1457  TP901 family phage tail tape measure protein  24.25 
 
 
1409 aa  75.1  0.000000000007  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  0.143459  normal  0.730205 
 
 
-
 
NC_009674  Bcer98_2586  TP901 family phage tail tape measure protein  23.44 
 
 
1346 aa  73.9  0.00000000001  Bacillus cytotoxicus NVH 391-98  Bacteria  normal  n/a   
 
 
-
 
NC_013440  Hoch_0849  phage tail tape measure protein, TP901 family  22.63 
 
 
936 aa  72.8  0.00000000003  Haliangium ochraceum DSM 14365  Bacteria  normal  0.259729  normal 
 
 
-
 
NC_013440  Hoch_0659  phage tail tape measure protein, TP901 family  22.59 
 
 
936 aa  71.2  0.00000000009  Haliangium ochraceum DSM 14365  Bacteria  normal  normal 
 
 
-
 
NC_007520  Tcr_0698  Phage tail tape measure protein TP901, core region  21.11 
 
 
760 aa  69.7  0.0000000003  Thiomicrospira crunogena XCL-2  Bacteria  normal  n/a   
 
 
-
 
NC_002978  WD0570  prophage P2W3, tail tape measure protein  22.26 
 
 
680 aa  68.6  0.0000000006  Wolbachia endosymbiont of Drosophila melanogaster  Bacteria  normal  n/a   
 
 
-
 
NC_013216  Dtox_4245  phage tail tape measure protein, TP901 family  24.11 
 
 
1478 aa  66.6  0.000000002  Desulfotomaculum acetoxidans DSM 771  Bacteria  normal  normal 
 
 
-
 
NC_011149  SeAg_B4465  putative phage tail protein  23.95 
 
 
784 aa  63.2  0.00000002  Salmonella enterica subsp. enterica serovar Agona str. SL483  Bacteria  normal  n/a   
 
 
-
 
NC_011083  SeHA_C4549  putative phage tail protein  23.95 
 
 
784 aa  62.4  0.00000004  Salmonella enterica subsp. enterica serovar Heidelberg str. SL476  Bacteria  normal  0.30814  normal  0.374859 
 
 
-
 
NC_011080  SNSL254_A4550  putative phage tail protein  23.95 
 
 
784 aa  60.8  0.0000001  Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  normal  0.423372  normal  0.711096 
 
 
-
 
NC_013517  Sterm_0868  phage tail tape measure protein, TP901 family  22.49 
 
 
981 aa  60.5  0.0000001  Sebaldella termitidis ATCC 33386  Bacteria  normal  n/a   
 
 
-
 
NC_013093  Amir_5635  phage tail tape measure protein, TP901 family  26.79 
 
 
1371 aa  61.2  0.0000001  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_009783  VIBHAR_01999  hypothetical protein  24.88 
 
 
997 aa  58.5  0.0000006  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_011988  Avi_6196  phage tail protein  27.51 
 
 
759 aa  57.4  0.000001  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_009667  Oant_1488  TP901 family phage tail tape measure protein  26.37 
 
 
781 aa  57.4  0.000001  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  n/a   
 
 
-
 
NC_009975  MmarC6_0079  TP901 family phage tail tape measure protein  25.41 
 
 
987 aa  56.6  0.000002  Methanococcus maripaludis C6  Archaea  normal  n/a   
 
 
-
 
NC_013216  Dtox_2149  hypothetical protein  39.68 
 
 
152 aa  50.8  0.0001  Desulfotomaculum acetoxidans DSM 771  Bacteria  normal  normal  0.017177 
 
 
-
 
NC_009253  Dred_1215  TP901 family phage tail tape measure protein  27.33 
 
 
1030 aa  50.8  0.0001  Desulfotomaculum reducens MI-1  Bacteria  normal  n/a   
 
 
-
 
NC_007964  Nham_3322  Phage tail tape measure protein TP901, core region  22.55 
 
 
743 aa  50.4  0.0002  Nitrobacter hamburgensis X14  Bacteria  normal  0.787637  n/a   
 
 
-
 
NC_010513  Xfasm12_0394  hypothetical protein  22.25 
 
 
739 aa  50.4  0.0002  Xylella fastidiosa M12  Bacteria  normal  n/a   
 
 
-
 
NC_010513  Xfasm12_1133  hypothetical protein  22.25 
 
 
739 aa  50.4  0.0002  Xylella fastidiosa M12  Bacteria  normal  n/a   
 
 
-
 
NC_010002  Daci_2588  TP901 family phage tail tape measure protein  24.46 
 
 
945 aa  49.3  0.0003  Delftia acidovorans SPH-1  Bacteria  normal  0.217501  hitchhiker  0.000000261263 
 
 
-
 
NC_010002  Daci_2622  TP901 family phage tail tape measure protein  24.46 
 
 
945 aa  49.3  0.0003  Delftia acidovorans SPH-1  Bacteria  normal  0.14845  hitchhiker  0.00000014123 
 
 
-
 
NC_008228  Patl_0709  TP901 family phage tail tape measure protein  26.37 
 
 
709 aa  48.1  0.0007  Pseudoalteromonas atlantica T6c  Bacteria  normal  n/a   
 
 
-
 
NC_008531  LEUM_1637  SLT domain-containing protein  28.36 
 
 
1736 aa  48.1  0.0008  Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293  Bacteria  normal  n/a   
 
 
-
 
NC_010577  XfasM23_1155  TP901 family phage tail tape measure protein  20.75 
 
 
739 aa  48.1  0.0009  Xylella fastidiosa M23  Bacteria  normal  n/a   
 
 
-
 
NC_013421  Pecwa_2893  phage tail tape measure protein, TP901 family  39.73 
 
 
817 aa  47.8  0.001  Pectobacterium wasabiae WPP163  Bacteria  normal  0.772057  n/a   
 
 
-
 
Page 1 of 1    << first  < prev  1  next >  last >>