14 homologs were found in PanDaTox collection
for query gene YPK_1211 on replicon NC_010465
Organism: Yersinia pseudotuberculosis YPIII



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Replicon accession
Locus tag
Product
% identity
Alignment on query gene
Alignment on homolog gene
Length
Bit score

E-value
Organism name
Kingdom
Plasmid clonability
Plasmid unclonability p-value
Fosmid clonability
Fosmid unclonability p-value
Coverage Plot
PanDaTox homologs
Experimental validation
NC_010465  YPK_1211  XRE family transcriptional regulator  100 
 
 		 71 aa  148  2e-35  Yersinia pseudotuberculosis YPIII  Bacteria  normal  1  n/a   
 
 
-
 
NC_009439  Pmen_3982  helix-turn-helix domain-containing protein  56.06 
 
 		 75 aa  85.9  2e-16  Pseudomonas mendocina ymp  Bacteria  hitchhiker  0.00000105146  normal  0.107406 
 
 
-
 
NC_004347  SO_2989  prophage LambdaSo, Cro/CI family transcriptional regulator  45.71 
 
 		 88 aa  73.9  0.0000000000007  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_008309  HS_1405  hypothetical protein  50.77 
 
 		 68 aa  70.1  0.00000000001  Haemophilus somnus 129PT  Bacteria  hitchhiker  0.00110719  n/a   
 
 
-
 
NC_009783  VIBHAR_01955  hypothetical protein  47.69 
 
 		 88 aa  60.8  0.000000007  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_009997  Sbal195_1971  XRE family transcriptional regulator  40 
 
 		 105 aa  56.6  0.0000001  Shewanella baltica OS195  Bacteria  normal  0.0320655  normal  0.0438636 
 
 
-
 
NC_009665  Shew185_1854  XRE family transcriptional regulator  36.84 
 
 		 96 aa  47.4  0.00007  Shewanella baltica OS185  Bacteria  normal  0.0214862  n/a   
 
 
-
 
NC_009997  Sbal195_3398  XRE family transcriptional regulator  36.84 
 
 		 96 aa  47.4  0.00007  Shewanella baltica OS195  Bacteria  normal  1  hitchhiker  0.000830683 
 
 
-
 
NC_009439  Pmen_3983  putative phage repressor  50.98 
 
 		 240 aa  46.2  0.0001  Pseudomonas mendocina ymp  Bacteria  hitchhiker  0.00000900431  normal  0.128218 
 
 
-
 
NC_013926  Aboo_0718  transcriptional regulator, XRE family  46.67 
 
 		 224 aa  43.5  0.001  Aciduliprofundum boonei T469  Archaea  normal  0.439384  n/a   
 
 
-
 
NC_009487  SaurJH9_0189  XRE family transcriptional regulator  36.51 
 
 		 65 aa  42.7  0.002  Staphylococcus aureus subsp. aureus JH9  Bacteria  normal  1  n/a   
 
 
-
 
NC_009632  SaurJH1_0195  helix-turn-helix domain-containing protein  36.51 
 
 		 65 aa  42.7  0.002  Staphylococcus aureus subsp. aureus JH1  Bacteria  normal  1  n/a   
 
 
-
 
NC_009253  Dred_0495  XRE family transcriptional regulator  43.24 
 
 		 100 aa  41.2  0.005  Desulfotomaculum reducens MI-1  Bacteria  hitchhiker  0.00400235  n/a   
 
 
-
 
NC_007644  Moth_0278  XRE family transcriptional regulator  35.82 
 
 		 128 aa  40.4  0.008  Moorella thermoacetica ATCC 39073  Bacteria  hitchhiker  0.0000672654  normal  0.646275 
 
 
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