More than 300 homologs were found in PanDaTox collection
for query gene YPK_1117 on replicon NC_010465
Organism: Yersinia pseudotuberculosis YPIII



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_009708  YpsIP31758_1063  ribonucleotide-diphosphate reductase subunit alpha  99.86 
 
 
716 aa  1488    Yersinia pseudotuberculosis IP 31758  Bacteria  normal  0.294535  n/a   
 
 
-
 
CP001509  ECD_02531  ribonucleotide-diphosphate reductase alpha subunit  73.18 
 
 
714 aa  1125    Escherichia coli BL21(DE3)  Bacteria  normal  0.913522  n/a   
 
 
-
 
CP001637  EcDH1_1008  ribonucleoside-diphosphate reductase, alpha subunit  74.18 
 
 
701 aa  1122    Escherichia coli DH1  Bacteria  normal  0.0182534  n/a   
 
 
-
 
NC_009513  Lreu_0323  ribonucleotide-diphosphate reductase subunit alpha  49.86 
 
 
723 aa  747    Lactobacillus reuteri DSM 20016  Bacteria  normal  n/a   
 
 
-
 
NC_012669  Bcav_0097  ribonucleoside-diphosphate reductase, alpha subunit  80.88 
 
 
701 aa  1209    Beutenbergia cavernae DSM 12333  Bacteria  normal  0.361083  normal 
 
 
-
 
NC_009801  EcE24377A_2956  ribonucleotide-diphosphate reductase subunit alpha  73.18 
 
 
714 aa  1123    Escherichia coli E24377A  Bacteria  normal  n/a   
 
 
-
 
NC_004116  SAG0420  ribonucleotide-diphosphate reductase subunit alpha  57.14 
 
 
721 aa  844    Streptococcus agalactiae 2603V/R  Bacteria  normal  0.290215  n/a   
 
 
-
 
NC_004116  SAG0819  ribonucleotide-diphosphate reductase subunit alpha  51.05 
 
 
719 aa  732    Streptococcus agalactiae 2603V/R  Bacteria  normal  n/a   
 
 
-
 
NC_004311  BRA0316  ribonucleotide-diphosphate reductase subunit alpha  81.44 
 
 
713 aa  1244    Brucella suis 1330  Bacteria  normal  0.748389  n/a   
 
 
-
 
NC_011205  SeD_A3113  ribonucleotide-diphosphate reductase subunit alpha  73.75 
 
 
714 aa  1115    Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853  Bacteria  normal  normal  0.678613 
 
 
-
 
NC_011879  Achl_4460  ribonucleoside-diphosphate reductase, alpha subunit  76.67 
 
 
726 aa  1144    Arthrobacter chlorophenolicus A6  Bacteria  n/a    hitchhiker  0.000339038 
 
 
-
 
NC_014158  Tpau_2969  ribonucleoside-diphosphate reductase, alpha subunit  81.08 
 
 
727 aa  1217    Tsukamurella paurometabola DSM 20162  Bacteria  normal  0.0677187  n/a   
 
 
-
 
NC_014213  Mesil_3233  hypothetical protein  44.24 
 
 
692 aa  636    Meiothermus silvanus DSM 9946  Bacteria  normal  0.546818  normal 
 
 
-
 
NC_006055  Mfl528  ribonucleotide-diphosphate reductase subunit alpha  54.77 
 
 
721 aa  821    Mesoplasma florum L1  Bacteria  normal  n/a   
 
 
-
 
NC_013721  HMPREF0424_0177  ribonucleoside-diphosphate reductase, alpha subunit  66.15 
 
 
741 aa  984    Gardnerella vaginalis 409-05  Bacteria  n/a    normal 
 
 
-
 
NC_012892  B21_02495  hypothetical protein  73.18 
 
 
714 aa  1125    Escherichia coli BL21  Bacteria  normal  0.953143  n/a   
 
 
-
 
NC_011094  SeSA_A2955  ribonucleotide-diphosphate reductase subunit alpha  74.04 
 
 
714 aa  1118    Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633  Bacteria  normal  normal  0.0229342 
 
 
-
 
NC_013515  Smon_0541  ribonucleoside-diphosphate reductase, alpha subunit  46.5 
 
 
694 aa  649    Streptobacillus moniliformis DSM 12112  Bacteria  n/a    n/a   
 
 
-
 
NC_013421  Pecwa_1146  ribonucleotide-diphosphate reductase subunit alpha  83.08 
 
 
721 aa  1270    Pectobacterium wasabiae WPP163  Bacteria  normal  0.749784  n/a   
 
 
-
 
NC_009832  Spro_3723  ribonucleotide-diphosphate reductase subunit alpha  85.61 
 
 
714 aa  1306    Serratia proteamaculans 568  Bacteria  normal  normal 
 
 
-
 
NC_010465  YPK_1117  ribonucleotide-diphosphate reductase subunit alpha  100 
 
 
716 aa  1491    Yersinia pseudotuberculosis YPIII  Bacteria  normal  n/a   
 
 
-
 
NC_011353  ECH74115_3919  ribonucleotide-diphosphate reductase subunit alpha  73.04 
 
 
714 aa  1125    Escherichia coli O157:H7 str. EC4115  Bacteria  normal  normal  0.109191 
 
 
-
 
NC_012850  Rleg_3793  ribonucleotide-diphosphate reductase subunit alpha  82.03 
 
 
716 aa  1251    Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal 
 
 
-
 
NC_010159  YpAngola_A3538  ribonucleotide-diphosphate reductase subunit alpha  99.86 
 
 
716 aa  1487    Yersinia pestis Angola  Bacteria  normal  0.0368107  decreased coverage  0.00084193 
 
 
-
 
NC_009668  Oant_2954  ribonucleotide-diphosphate reductase subunit alpha  81.74 
 
 
739 aa  1238    Ochrobactrum anthropi ATCC 49188  Bacteria  normal  n/a   
 
 
-
 
NC_013521  Sked_10200  ribonucleoside-diphosphate reductase class Ib alpha subunit  79.8 
 
 
693 aa  1186    Sanguibacter keddieii DSM 10542  Bacteria  normal  0.0985142  normal  0.889698 
 
 
-
 
NC_014151  Cfla_0448  ribonucleoside-diphosphate reductase, alpha subunit  80.31 
 
 
719 aa  1200    Cellulomonas flavigena DSM 20109  Bacteria  normal  normal 
 
 
-
 
NC_010498  EcSMS35_2797  ribonucleotide-diphosphate reductase subunit alpha  73.32 
 
 
714 aa  1128    Escherichia coli SMS-3-5  Bacteria  normal  0.708424  normal  0.0256138 
 
 
-
 
NC_014213  Mesil_3415  NrdI protein  44.24 
 
 
692 aa  636    Meiothermus silvanus DSM 9946  Bacteria  normal  0.183985  normal  0.510815 
 
 
-
 
NC_007633  MCAP_0101  ribonucleotide-diphosphate reductase subunit alpha  55.17 
 
 
720 aa  799    Mycoplasma capricolum subsp. capricolum ATCC 27343  Bacteria  normal  n/a   
 
 
-
 
NC_013530  Xcel_2437  ribonucleoside-diphosphate reductase, alpha subunit  77.49 
 
 
718 aa  1165    Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  0.260563  n/a   
 
 
-
 
NC_009436  Ent638_3155  ribonucleotide-diphosphate reductase subunit alpha  75.43 
 
 
705 aa  1127    Enterobacter sp. 638  Bacteria  normal  0.0294592  normal 
 
 
-
 
NC_009800  EcHS_A2811  ribonucleotide-diphosphate reductase subunit alpha  73.18 
 
 
714 aa  1125    Escherichia coli HS  Bacteria  normal  n/a   
 
 
-
 
NC_011981  Avi_7387  ribonucleotide-diphosphate reductase subunit alpha  81.67 
 
 
693 aa  1221    Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_013441  Gbro_3289  ribonucleoside-diphosphate reductase, alpha subunit  80.91 
 
 
731 aa  1215    Gordonia bronchialis DSM 43247  Bacteria  normal  n/a   
 
 
-
 
NC_012803  Mlut_10490  ribonucleotide-diphosphate reductase subunit alpha  78.32 
 
 
725 aa  1174    Micrococcus luteus NCTC 2665  Bacteria  normal  0.0211585  n/a   
 
 
-
 
NC_011369  Rleg2_3498  ribonucleotide-diphosphate reductase subunit alpha  82.03 
 
 
734 aa  1254    Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal  0.68822 
 
 
-
 
NC_011149  SeAg_B2924  ribonucleotide-diphosphate reductase subunit alpha  73.89 
 
 
714 aa  1118    Salmonella enterica subsp. enterica serovar Agona str. SL483  Bacteria  normal  n/a   
 
 
-
 
NC_013517  Sterm_2765  ribonucleoside-diphosphate reductase, alpha subunit  46.89 
 
 
696 aa  655    Sebaldella termitidis ATCC 33386  Bacteria  normal  n/a   
 
 
-
 
NC_009504  BOV_A0292  ribonucleotide-diphosphate reductase subunit alpha  81.44 
 
 
713 aa  1244    Brucella ovis ATCC 25840  Bacteria  normal  0.201998  n/a   
 
 
-
 
NC_007963  Csal_0379  ribonucleoside-diphosphate reductase class Ib alpha subunit  80.03 
 
 
723 aa  1229    Chromohalobacter salexigens DSM 3043  Bacteria  normal  n/a   
 
 
-
 
NC_012912  Dd1591_1012  ribonucleoside-diphosphate reductase, alpha subunit  73.46 
 
 
715 aa  1118    Dickeya zeae Ech1591  Bacteria  normal  0.312798  n/a   
 
 
-
 
NC_009664  Krad_0805  ribonucleoside-diphosphate reductase, alpha subunit  73.31 
 
 
720 aa  1123    Kineococcus radiotolerans SRS30216  Bacteria  normal  normal 
 
 
-
 
NC_008044  TM1040_0519  ribonucleotide-diphosphate reductase subunit alpha  76.91 
 
 
710 aa  1154    Ruegeria sp. TM1040  Bacteria  normal  0.356261  normal  0.0658989 
 
 
-
 
NC_009565  TBFG_13067  ribonucleotide-diphosphate reductase subunit alpha  81.91 
 
 
725 aa  1232    Mycobacterium tuberculosis F11  Bacteria  normal  normal  0.134341 
 
 
-
 
NC_008146  Mmcs_1817  ribonucleotide-diphosphate reductase subunit alpha  82.11 
 
 
693 aa  1222    Mycobacterium sp. MCS  Bacteria  normal  0.611575  n/a   
 
 
-
 
NC_013174  Jden_1752  ribonucleoside-diphosphate reductase, alpha subunit  77.49 
 
 
705 aa  1169    Jonesia denitrificans DSM 20603  Bacteria  normal  normal  0.0635654 
 
 
-
 
NC_010816  BLD_1462  ribonucleotide-diphosphate reductase subunit alpha  68.45 
 
 
731 aa  1020    Bifidobacterium longum DJO10A  Bacteria  normal  n/a   
 
 
-
 
NC_011886  Achl_2117  ribonucleotide-diphosphate reductase subunit alpha  80.17 
 
 
712 aa  1196    Arthrobacter chlorophenolicus A6  Bacteria  n/a    hitchhiker  0.000179447 
 
 
-
 
NC_009338  Mflv_4305  ribonucleotide-diphosphate reductase subunit alpha  80.17 
 
 
701 aa  1212    Mycobacterium gilvum PYR-GCK  Bacteria  normal  normal 
 
 
-
 
NC_009077  Mjls_1798  ribonucleotide-diphosphate reductase subunit alpha  82.11 
 
 
693 aa  1222    Mycobacterium sp. JLS  Bacteria  normal  0.203232  normal 
 
 
-
 
NC_011083  SeHA_C2990  ribonucleotide-diphosphate reductase subunit alpha  73.89 
 
 
714 aa  1118    Salmonella enterica subsp. enterica serovar Heidelberg str. SL476  Bacteria  normal  normal  0.0690865 
 
 
-
 
NC_012917  PC1_3133  ribonucleotide-diphosphate reductase subunit alpha  83.5 
 
 
721 aa  1272    Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  n/a   
 
 
-
 
NC_008527  LACR_1061  ribonucleotide-diphosphate reductase subunit alpha  49.58 
 
 
722 aa  718    Lactococcus lactis subsp. cremoris SK11  Bacteria  normal  0.50042  n/a   
 
 
-
 
NC_008528  OEOE_0140  ribonucleotide-diphosphate reductase subunit alpha  47.71 
 
 
723 aa  710    Oenococcus oeni PSU-1  Bacteria  normal  n/a   
 
 
-
 
NC_008531  LEUM_0254  ribonucleotide-diphosphate reductase subunit alpha  49.02 
 
 
723 aa  738    Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293  Bacteria  normal  n/a   
 
 
-
 
NC_008532  STER_1248  ribonucleotide-diphosphate reductase subunit alpha  51.89 
 
 
719 aa  743    Streptococcus thermophilus LMD-9  Bacteria  normal  0.514048  n/a   
 
 
-
 
NC_008541  Arth_2356  ribonucleotide-diphosphate reductase subunit alpha  79.74 
 
 
727 aa  1190    Arthrobacter sp. FB24  Bacteria  normal  n/a   
 
 
-
 
NC_010658  SbBS512_E3204  ribonucleotide-diphosphate reductase subunit alpha  73.46 
 
 
714 aa  1127    Shigella boydii CDC 3083-94  Bacteria  normal  n/a   
 
 
-
 
NC_008687  Pden_4377  ribonucleotide-diphosphate reductase subunit alpha  75.95 
 
 
708 aa  1156    Paracoccus denitrificans PD1222  Bacteria  normal  0.692783  normal  0.664042 
 
 
-
 
NC_008783  BARBAKC583_0356  ribonucleotide-diphosphate reductase subunit alpha  76.26 
 
 
716 aa  1167    Bartonella bacilliformis KC583  Bacteria  normal  n/a   
 
 
-
 
NC_008705  Mkms_1864  ribonucleotide-diphosphate reductase subunit alpha  82.11 
 
 
693 aa  1222    Mycobacterium sp. KMS  Bacteria  normal  0.4812  normal  0.335133 
 
 
-
 
NC_011080  SNSL254_A3007  ribonucleotide-diphosphate reductase subunit alpha  73.89 
 
 
714 aa  1117    Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  normal  hitchhiker  0.00467921 
 
 
-
 
NC_010468  EcolC_1031  ribonucleotide-diphosphate reductase subunit alpha  74.18 
 
 
701 aa  1122    Escherichia coli ATCC 8739  Bacteria  normal  normal  0.578338 
 
 
-
 
NC_008726  Mvan_2042  ribonucleotide-diphosphate reductase subunit alpha  80.63 
 
 
722 aa  1225    Mycobacterium vanbaalenii PYR-1  Bacteria  normal  normal  0.721835 
 
 
-
 
NC_013172  Bfae_24910  ribonucleoside-diphosphate reductase class Ib alpha subunit  78.12 
 
 
710 aa  1174    Brachybacterium faecium DSM 4810  Bacteria  normal  0.456629  n/a   
 
 
-
 
NC_003909  BCE_1470  ribonucleotide-diphosphate reductase subunit alpha  44.93 
 
 
694 aa  634  1e-180  Bacillus cereus ATCC 10987  Bacteria  normal  0.581148  n/a   
 
 
-
 
NC_007530  GBAA_1371  ribonucleotide-diphosphate reductase subunit alpha  44.93 
 
 
694 aa  635  1e-180  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  0.356009  n/a   
 
 
-
 
NC_011725  BCB4264_A1405  ribonucleotide-diphosphate reductase subunit alpha  44.93 
 
 
682 aa  633  1e-180  Bacillus cereus B4264  Bacteria  normal  0.208347  n/a   
 
 
-
 
NC_011772  BCG9842_B3938  ribonucleotide-diphosphate reductase subunit alpha  44.78 
 
 
682 aa  631  1e-179  Bacillus cereus G9842  Bacteria  normal  0.0225343  normal  0.149352 
 
 
-
 
NC_013946  Mrub_0969  ribonucleoside-diphosphate reductase subunit alpha  43.24 
 
 
691 aa  601  1e-170  Meiothermus ruber DSM 1279  Bacteria  normal  normal 
 
 
-
 
NC_009487  SaurJH9_0755  ribonucleotide-diphosphate reductase subunit alpha  42.3 
 
 
701 aa  575  1.0000000000000001e-162  Staphylococcus aureus subsp. aureus JH9  Bacteria  normal  0.627384  n/a   
 
 
-
 
NC_009632  SaurJH1_0772  ribonucleotide-diphosphate reductase subunit alpha  42.3 
 
 
701 aa  575  1.0000000000000001e-162  Staphylococcus aureus subsp. aureus JH1  Bacteria  normal  0.424597  n/a   
 
 
-
 
NC_002976  SERP0397  ribonucleotide-diphosphate reductase subunit alpha  41.86 
 
 
701 aa  568  1e-161  Staphylococcus epidermidis RP62A  Bacteria  normal  n/a   
 
 
-
 
NC_008025  Dgeo_1774  ribonucleoside-diphosphate reductase, alpha subunit  40.49 
 
 
649 aa  523  1e-147  Deinococcus geothermalis DSM 11300  Bacteria  normal  0.187024  normal 
 
 
-
 
NC_010184  BcerKBAB4_1269  ribonucleoside-diphosphate reductase  42.95 
 
 
462 aa  414  1e-114  Bacillus weihenstephanensis KBAB4  Bacteria  normal  0.662266  n/a   
 
 
-
 
NC_009674  Bcer98_1075  ribonucleoside-diphosphate reductase  43.16 
 
 
462 aa  413  1e-114  Bacillus cytotoxicus NVH 391-98  Bacteria  normal  n/a   
 
 
-
 
NC_005957  BT9727_1241  ribonucleoside-diphosphate reductase alpha chain, C-terminal region  42.28 
 
 
440 aa  387  1e-106  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  normal  0.957879  n/a   
 
 
-
 
NC_011773  BCAH820_1443  ribonucleoside-diphosphate reductase, alpha subunit, group I intron-containing  42.28 
 
 
440 aa  387  1e-106  Bacillus cereus AH820  Bacteria  n/a    hitchhiker  0.000000121197 
 
 
-
 
NC_005945  BAS1269  ribonucleoside-diphosphate reductase subunit alpha, group I intron-containing  42.06 
 
 
440 aa  385  1e-105  Bacillus anthracis str. Sterne  Bacteria  normal  n/a   
 
 
-
 
NC_006274  BCZK1242  ribonucleoside-diphosphate reductase, alpha subunit, N-terminal region  48.08 
 
 
376 aa  358  9.999999999999999e-98  Bacillus cereus E33L  Bacteria  normal  n/a   
 
 
-
 
NC_011658  BCAH187_A1509  ribonucleoside-diphosphate reductase, subunit alpha  48.08 
 
 
364 aa  358  1.9999999999999998e-97  Bacillus cereus AH187  Bacteria  hitchhiker  0.000257985  n/a   
 
 
-
 
NC_012793  GWCH70_0597  ribonucleotide-diphosphate reductase subunit alpha  32.6 
 
 
761 aa  331  2e-89  Geobacillus sp. WCH70  Bacteria  normal  n/a   
 
 
-
 
NC_013411  GYMC61_1699  ribonucleotide-diphosphate reductase subunit alpha  32.89 
 
 
760 aa  325  2e-87  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_002976  SERP1513  truncated ribonucleoside-diphosphate reductase 2, alpha subunit  40.71 
 
 
969 aa  292  1e-77  Staphylococcus epidermidis RP62A  Bacteria  unclonable  0.00000128379  n/a   
 
 
-
 
NC_011071  Smal_2296  ribonucleotide-diphosphate reductase subunit alpha  30.7 
 
 
787 aa  284  3.0000000000000004e-75  Stenotrophomonas maltophilia R551-3  Bacteria  decreased coverage  0.00177695  normal  0.152718 
 
 
-
 
NC_013205  Aaci_1599  ribonucleoside-diphosphate reductase, alpha subunit  32.69 
 
 
772 aa  284  4.0000000000000003e-75  Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria  hitchhiker  0.0000761375  n/a   
 
 
-
 
NC_013204  Elen_2289  ribonucleotide-diphosphate reductase subunit alpha  29.78 
 
 
845 aa  281  4e-74  Eggerthella lenta DSM 2243  Bacteria  normal  0.172108  normal 
 
 
-
 
NC_010513  Xfasm12_0537  ribonucleotide-diphosphate reductase subunit alpha  30.4 
 
 
830 aa  278  3e-73  Xylella fastidiosa M12  Bacteria  normal  0.062299  n/a   
 
 
-
 
NC_010717  PXO_02897  ribonucleotide-diphosphate reductase subunit alpha  30.13 
 
 
832 aa  276  9e-73  Xanthomonas oryzae pv. oryzae PXO99A  Bacteria  normal  n/a   
 
 
-
 
NC_010577  XfasM23_0474  ribonucleotide-diphosphate reductase subunit alpha  30.55 
 
 
830 aa  276  9e-73  Xylella fastidiosa M23  Bacteria  normal  0.836355  n/a   
 
 
-
 
NC_013171  Apre_1700  ribonucleotide-diphosphate reductase subunit alpha  27.71 
 
 
842 aa  271  2.9999999999999997e-71  Anaerococcus prevotii DSM 20548  Bacteria  hitchhiker  0.000192568  n/a   
 
 
-
 
NC_008262  CPR_2356  ribonucleotide-diphosphate reductase subunit alpha  27.78 
 
 
743 aa  267  4e-70  Clostridium perfringens SM101  Bacteria  normal  n/a   
 
 
-
 
NC_002967  TDE0341  ribonucleotide-diphosphate reductase subunit alpha  28.26 
 
 
845 aa  265  3e-69  Treponema denticola ATCC 35405  Bacteria  normal  n/a   
 
 
-
 
NC_008261  CPF_2671  ribonucleotide-diphosphate reductase subunit alpha  27.49 
 
 
743 aa  263  1e-68  Clostridium perfringens ATCC 13124  Bacteria  normal  0.267181  n/a   
 
 
-
 
NC_008599  CFF8240_1820  ribonucleotide-diphosphate reductase subunit alpha  28.2 
 
 
791 aa  262  1e-68  Campylobacter fetus subsp. fetus 82-40  Bacteria  normal  n/a   
 
 
-
 
NC_003912  CJE0024  ribonucleotide-diphosphate reductase subunit alpha  27.76 
 
 
789 aa  261  4e-68  Campylobacter jejuni RM1221  Bacteria  normal  n/a   
 
 
-
 
NC_009707  JJD26997_0026  ribonucleotide-diphosphate reductase subunit alpha  28.19 
 
 
789 aa  260  6e-68  Campylobacter jejuni subsp. doylei 269.97  Bacteria  normal  n/a   
 
 
-
 
NC_008787  CJJ81176_0051  ribonucleotide-diphosphate reductase subunit alpha  27.75 
 
 
789 aa  260  6e-68  Campylobacter jejuni subsp. jejuni 81-176  Bacteria  normal  n/a   
 
 
-
 
NC_007575  Suden_2096  ribonucleotide-diphosphate reductase subunit alpha  30.46 
 
 
788 aa  258  3e-67  Sulfurimonas denitrificans DSM 1251  Bacteria  normal  n/a   
 
 
-
 
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