More than 300 homologs were found in PanDaTox collection
for query gene Vapar_5556 on replicon NC_012792
Organism: Variovorax paradoxus S110



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_012792  Vapar_5556  two component transcriptional regulator, LuxR family  100 
 
 
255 aa  504  9.999999999999999e-143  Variovorax paradoxus S110  Bacteria  normal  0.853701  n/a   
 
 
-
 
NC_014165  Tbis_0775  LuxR family two component transcriptional regulator  45.6 
 
 
234 aa  206  2e-52  Thermobispora bispora DSM 43833  Bacteria  normal  normal  0.336237 
 
 
-
 
NC_013510  Tcur_4038  two component transcriptional regulator, LuxR family  43.08 
 
 
253 aa  197  9e-50  Thermomonospora curvata DSM 43183  Bacteria  normal  n/a   
 
 
-
 
NC_013595  Sros_1417  response regulator receiver protein  41.73 
 
 
234 aa  192  3e-48  Streptosporangium roseum DSM 43021  Bacteria  normal  normal  0.0224272 
 
 
-
 
NC_009523  RoseRS_3421  two component LuxR family transcriptional regulator  46.96 
 
 
223 aa  191  7e-48  Roseiflexus sp. RS-1  Bacteria  normal  normal  0.0556432 
 
 
-
 
NC_009767  Rcas_1142  two component LuxR family transcriptional regulator  46.52 
 
 
222 aa  188  9e-47  Roseiflexus castenholzii DSM 13941  Bacteria  normal  0.661777  normal 
 
 
-
 
NC_013757  Gobs_4064  two component transcriptional regulator, LuxR family  47.21 
 
 
217 aa  185  7e-46  Geodermatophilus obscurus DSM 43160  Bacteria  normal  n/a   
 
 
-
 
NC_007777  Francci3_0765  two component LuxR family transcriptional regulator  41.39 
 
 
237 aa  183  3e-45  Frankia sp. CcI3  Bacteria  normal  0.272345  normal 
 
 
-
 
NC_011831  Cagg_2804  two component transcriptional regulator, LuxR family  44.35 
 
 
216 aa  182  4.0000000000000006e-45  Chloroflexus aggregans DSM 9485  Bacteria  normal  0.995251  normal  0.311692 
 
 
-
 
NC_013510  Tcur_2233  two component transcriptional regulator, LuxR family  46.15 
 
 
232 aa  182  5.0000000000000004e-45  Thermomonospora curvata DSM 43183  Bacteria  hitchhiker  0.00197033  n/a   
 
 
-
 
NC_009921  Franean1_5840  two component LuxR family transcriptional regulator  41.39 
 
 
237 aa  181  1e-44  Frankia sp. EAN1pec  Bacteria  normal  0.0206065  normal  0.380036 
 
 
-
 
NC_009664  Krad_3810  two component transcriptional regulator, LuxR family  39.22 
 
 
236 aa  178  7e-44  Kineococcus radiotolerans SRS30216  Bacteria  normal  0.225059  normal  0.0261757 
 
 
-
 
NC_011831  Cagg_0340  two component transcriptional regulator, LuxR family  43.93 
 
 
217 aa  176  3e-43  Chloroflexus aggregans DSM 9485  Bacteria  hitchhiker  0.00614189  hitchhiker  0.00317709 
 
 
-
 
NC_009921  Franean1_3185  two component LuxR family transcriptional regulator  43.1 
 
 
223 aa  176  4e-43  Frankia sp. EAN1pec  Bacteria  normal  0.704721  normal 
 
 
-
 
NC_009664  Krad_1198  two component transcriptional regulator, LuxR family  45 
 
 
225 aa  176  5e-43  Kineococcus radiotolerans SRS30216  Bacteria  normal  0.109916  normal  0.0247339 
 
 
-
 
NC_009972  Haur_2171  two component LuxR family transcriptional regulator  40.51 
 
 
218 aa  176  5e-43  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  0.0762379  n/a   
 
 
-
 
NC_013946  Mrub_0806  two component LuxR family transcriptional regulator  39.5 
 
 
216 aa  175  7e-43  Meiothermus ruber DSM 1279  Bacteria  normal  normal 
 
 
-
 
NC_009523  RoseRS_4258  two component LuxR family transcriptional regulator  44.4 
 
 
216 aa  175  7e-43  Roseiflexus sp. RS-1  Bacteria  normal  normal 
 
 
-
 
NC_014210  Ndas_1972  two component transcriptional regulator, LuxR family  42.68 
 
 
217 aa  175  8e-43  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  unclonable  0.0000000794288  unclonable  0.0000000332591 
 
 
-
 
NC_013595  Sros_8793  response regulator receiver protein  44.07 
 
 
221 aa  174  9.999999999999999e-43  Streptosporangium roseum DSM 43021  Bacteria  normal  0.321987  normal 
 
 
-
 
NC_014210  Ndas_3601  two component transcriptional regulator, LuxR family  47.46 
 
 
222 aa  173  1.9999999999999998e-42  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  0.324048  normal 
 
 
-
 
NC_013947  Snas_2037  two component transcriptional regulator, LuxR family  46.19 
 
 
225 aa  173  1.9999999999999998e-42  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal  0.137578 
 
 
-
 
NC_014248  Aazo_0236  LuxR family two component transcriptional regulator  42.74 
 
 
218 aa  171  7.999999999999999e-42  'Nostoc azollae' 0708  Bacteria  normal  n/a   
 
 
-
 
NC_007333  Tfu_2491  LuxR response regulator receiver  39.92 
 
 
242 aa  171  9e-42  Thermobifida fusca YX  Bacteria  normal  0.470277  n/a   
 
 
-
 
NC_013947  Snas_4479  two component transcriptional regulator, LuxR family  42.74 
 
 
224 aa  170  2e-41  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.518456  normal  0.598935 
 
 
-
 
NC_012803  Mlut_21850  response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain  42.92 
 
 
222 aa  169  4e-41  Micrococcus luteus NCTC 2665  Bacteria  normal  0.118113  n/a   
 
 
-
 
NC_013131  Caci_7589  two component transcriptional regulator, LuxR family  40.17 
 
 
225 aa  169  6e-41  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.438424  normal  0.37363 
 
 
-
 
NC_013510  Tcur_0110  two component transcriptional regulator, LuxR family  43.64 
 
 
222 aa  168  7e-41  Thermomonospora curvata DSM 43183  Bacteria  normal  n/a   
 
 
-
 
NC_013595  Sros_5304  response regulator receiver protein  43.4 
 
 
220 aa  168  8e-41  Streptosporangium roseum DSM 43021  Bacteria  normal  0.128918  normal 
 
 
-
 
NC_008697  Noca_4902  response regulator receiver  42.74 
 
 
216 aa  168  1e-40  Nocardioides sp. JS614  Bacteria  normal  0.443208  normal  0.676579 
 
 
-
 
NC_013739  Cwoe_1616  two component transcriptional regulator, LuxR family  43.16 
 
 
229 aa  167  1e-40  Conexibacter woesei DSM 14684  Bacteria  normal  normal 
 
 
-
 
NC_014210  Ndas_4080  two component transcriptional regulator, LuxR family  39.24 
 
 
241 aa  167  2e-40  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  normal  0.858367 
 
 
-
 
NC_013530  Xcel_1619  two component transcriptional regulator, LuxR family  41.95 
 
 
234 aa  166  2.9999999999999998e-40  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  n/a   
 
 
-
 
NC_007413  Ava_2028  two component LuxR family transcriptional regulator  41.03 
 
 
219 aa  166  2.9999999999999998e-40  Anabaena variabilis ATCC 29413  Bacteria  normal  0.515359  normal 
 
 
-
 
NC_014212  Mesil_2510  two component transcriptional regulator, LuxR family  38.24 
 
 
217 aa  166  2.9999999999999998e-40  Meiothermus silvanus DSM 9946  Bacteria  normal  normal 
 
 
-
 
NC_013739  Cwoe_0356  two component transcriptional regulator, LuxR family  42.37 
 
 
220 aa  166  2.9999999999999998e-40  Conexibacter woesei DSM 14684  Bacteria  normal  0.165726  normal  0.0985551 
 
 
-
 
NC_008578  Acel_1760  two component LuxR family transcriptional regulator  38.24 
 
 
303 aa  166  2.9999999999999998e-40  Acidothermus cellulolyticus 11B  Bacteria  normal  normal  0.887336 
 
 
-
 
NC_013131  Caci_7105  two component transcriptional regulator, LuxR family  38.87 
 
 
241 aa  166  4e-40  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.106023  normal  0.469545 
 
 
-
 
NC_013530  Xcel_1618  two component transcriptional regulator, LuxR family  42.55 
 
 
220 aa  166  5e-40  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  n/a   
 
 
-
 
NC_013131  Caci_8412  two component transcriptional regulator, LuxR family  40.64 
 
 
239 aa  166  5e-40  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_009972  Haur_3654  two component LuxR family transcriptional regulator  42.02 
 
 
221 aa  165  5e-40  Herpetosiphon aurantiacus ATCC 23779  Bacteria  hitchhiker  0.0000210563  n/a   
 
 
-
 
NC_013159  Svir_26840  response regulator containing a CheY-like receiver domain protein and an HTH DNA-binding domain protein  41.91 
 
 
239 aa  165  5.9999999999999996e-40  Saccharomonospora viridis DSM 43017  Bacteria  normal  0.274056  normal  0.228776 
 
 
-
 
NC_013204  Elen_2822  two component transcriptional regulator, LuxR family  40.68 
 
 
228 aa  165  5.9999999999999996e-40  Eggerthella lenta DSM 2243  Bacteria  normal  0.0415698  normal  0.590713 
 
 
-
 
NC_013131  Caci_7415  two component transcriptional regulator, LuxR family  42.74 
 
 
228 aa  165  5.9999999999999996e-40  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.933403  normal 
 
 
-
 
NC_011884  Cyan7425_1401  two component transcriptional regulator, LuxR family  41.84 
 
 
217 aa  164  1.0000000000000001e-39  Cyanothece sp. PCC 7425  Bacteria  normal  normal  0.482316 
 
 
-
 
NC_013757  Gobs_2015  two component transcriptional regulator, LuxR family  41.84 
 
 
232 aa  164  1.0000000000000001e-39  Geodermatophilus obscurus DSM 43160  Bacteria  normal  0.706703  n/a   
 
 
-
 
NC_008699  Noca_1438  response regulator receiver  38.98 
 
 
213 aa  164  1.0000000000000001e-39  Nocardioides sp. JS614  Bacteria  normal  0.494689  n/a   
 
 
-
 
NC_013595  Sros_7301  response regulator receiver protein  40.17 
 
 
220 aa  164  1.0000000000000001e-39  Streptosporangium roseum DSM 43021  Bacteria  normal  normal 
 
 
-
 
NC_009953  Sare_1782  two component LuxR family transcriptional regulator  41.6 
 
 
230 aa  164  1.0000000000000001e-39  Salinispora arenicola CNS-205  Bacteria  normal  hitchhiker  0.0025253 
 
 
-
 
NC_013947  Snas_1903  two component transcriptional regulator, LuxR family  42.74 
 
 
225 aa  164  1.0000000000000001e-39  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.202425  normal  0.182857 
 
 
-
 
NC_013131  Caci_6529  two component transcriptional regulator, LuxR family  46.32 
 
 
224 aa  164  2.0000000000000002e-39  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.270807  normal  0.114568 
 
 
-
 
NC_013235  Namu_3387  two component transcriptional regulator, LuxR family  43.1 
 
 
223 aa  163  3e-39  Nakamurella multipartita DSM 44233  Bacteria  hitchhiker  0.0000386408  hitchhiker  0.000570848 
 
 
-
 
NC_013172  Bfae_11600  response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain  44.92 
 
 
225 aa  162  4.0000000000000004e-39  Brachybacterium faecium DSM 4810  Bacteria  decreased coverage  0.00120804  n/a   
 
 
-
 
NC_012669  Bcav_1049  two component transcriptional regulator, LuxR family  41.03 
 
 
222 aa  162  5.0000000000000005e-39  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.661499  normal  0.245945 
 
 
-
 
NC_013947  Snas_4946  two component transcriptional regulator, LuxR family  41.95 
 
 
224 aa  162  5.0000000000000005e-39  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.13115  normal 
 
 
-
 
NC_013093  Amir_2737  two component transcriptional regulator, LuxR family  43.22 
 
 
227 aa  162  5.0000000000000005e-39  Actinosynnema mirum DSM 43827  Bacteria  normal  0.418014  n/a   
 
 
-
 
NC_011831  Cagg_1769  two component transcriptional regulator, LuxR family  43.59 
 
 
219 aa  161  8.000000000000001e-39  Chloroflexus aggregans DSM 9485  Bacteria  normal  0.221401  normal  0.0578747 
 
 
-
 
NC_013441  Gbro_4119  response regulator receiver  40.08 
 
 
230 aa  161  9e-39  Gordonia bronchialis DSM 43247  Bacteria  normal  n/a   
 
 
-
 
NC_014210  Ndas_2087  two component transcriptional regulator, LuxR family  39.59 
 
 
247 aa  161  1e-38  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  0.73112  normal 
 
 
-
 
NC_013947  Snas_1740  two component transcriptional regulator, LuxR family  41.28 
 
 
228 aa  160  2e-38  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal 
 
 
-
 
NC_009664  Krad_4217  two component transcriptional regulator, LuxR family  43.62 
 
 
225 aa  160  2e-38  Kineococcus radiotolerans SRS30216  Bacteria  decreased coverage  0.000816589  normal  0.757819 
 
 
-
 
NC_013739  Cwoe_4937  two component transcriptional regulator, LuxR family  39.48 
 
 
224 aa  160  2e-38  Conexibacter woesei DSM 14684  Bacteria  normal  0.570807  normal  0.210467 
 
 
-
 
NC_007333  Tfu_1403  LuxR response regulator receiver  40.6 
 
 
214 aa  160  3e-38  Thermobifida fusca YX  Bacteria  normal  0.676683  n/a   
 
 
-
 
NC_007333  Tfu_1845  LuxR response regulator receiver  40.85 
 
 
215 aa  160  3e-38  Thermobifida fusca YX  Bacteria  hitchhiker  0.00433344  n/a   
 
 
-
 
NC_008148  Rxyl_2511  two component LuxR family transcriptional regulator  37.93 
 
 
229 aa  159  3e-38  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  n/a   
 
 
-
 
NC_009380  Strop_1796  response regulator receiver  40 
 
 
230 aa  159  3e-38  Salinispora tropica CNB-440  Bacteria  normal  normal 
 
 
-
 
NC_009483  Gura_0759  two component LuxR family transcriptional regulator  41.6 
 
 
217 aa  159  3e-38  Geobacter uraniireducens Rf4  Bacteria  decreased coverage  0.00000000356105  n/a   
 
 
-
 
NC_013510  Tcur_2302  two component transcriptional regulator, LuxR family  39.83 
 
 
226 aa  159  4e-38  Thermomonospora curvata DSM 43183  Bacteria  normal  0.0191252  n/a   
 
 
-
 
NC_009921  Franean1_5512  two component LuxR family transcriptional regulator  39.08 
 
 
250 aa  159  4e-38  Frankia sp. EAN1pec  Bacteria  normal  normal  0.631776 
 
 
-
 
NC_012803  Mlut_02970  response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain  41.03 
 
 
227 aa  159  4e-38  Micrococcus luteus NCTC 2665  Bacteria  normal  0.611463  n/a   
 
 
-
 
NC_008148  Rxyl_1550  two component LuxR family transcriptional regulator  39.08 
 
 
220 aa  159  5e-38  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  n/a   
 
 
-
 
NC_013595  Sros_3244  response regulator receiver protein  41.2 
 
 
218 aa  158  7e-38  Streptosporangium roseum DSM 43021  Bacteria  hitchhiker  0.000568428  normal  0.332742 
 
 
-
 
NC_013595  Sros_3251  response regulator receiver protein  39.32 
 
 
221 aa  158  8e-38  Streptosporangium roseum DSM 43021  Bacteria  normal  0.0793449  normal 
 
 
-
 
NC_014165  Tbis_0951  LuxR family two component transcriptional regulator  40.34 
 
 
221 aa  157  1e-37  Thermobispora bispora DSM 43833  Bacteria  normal  0.392411  normal  0.343359 
 
 
-
 
NC_013510  Tcur_1532  two component transcriptional regulator, LuxR family  45.3 
 
 
220 aa  157  1e-37  Thermomonospora curvata DSM 43183  Bacteria  normal  0.0114765  n/a   
 
 
-
 
NC_013521  Sked_36930  response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain  42.62 
 
 
222 aa  157  1e-37  Sanguibacter keddieii DSM 10542  Bacteria  normal  normal  0.811978 
 
 
-
 
NC_013947  Snas_4662  two component transcriptional regulator, LuxR family  40.6 
 
 
221 aa  158  1e-37  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.142047  hitchhiker  0.00679998 
 
 
-
 
NC_013131  Caci_7812  two component transcriptional regulator, LuxR family  42.49 
 
 
227 aa  158  1e-37  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_013595  Sros_4577  response regulator receiver protein  40.17 
 
 
223 aa  157  1e-37  Streptosporangium roseum DSM 43021  Bacteria  normal  normal  0.172592 
 
 
-
 
NC_013131  Caci_8900  two component transcriptional regulator, LuxR family  44.49 
 
 
221 aa  158  1e-37  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.967084  normal 
 
 
-
 
NC_014165  Tbis_1846  LuxR family two component transcriptional regulator  41.42 
 
 
226 aa  157  1e-37  Thermobispora bispora DSM 43833  Bacteria  normal  0.699471  normal 
 
 
-
 
NC_013235  Namu_0651  two component transcriptional regulator, LuxR family  42.17 
 
 
241 aa  157  1e-37  Nakamurella multipartita DSM 44233  Bacteria  normal  normal 
 
 
-
 
NC_013093  Amir_6235  two component transcriptional regulator, LuxR family  42.17 
 
 
215 aa  157  1e-37  Actinosynnema mirum DSM 43827  Bacteria  normal  0.502704  n/a   
 
 
-
 
NC_014151  Cfla_2842  two component transcriptional regulator, LuxR family  41.7 
 
 
226 aa  157  1e-37  Cellulomonas flavigena DSM 20109  Bacteria  normal  0.622781  decreased coverage  0.00305681 
 
 
-
 
NC_013093  Amir_5375  two component transcriptional regulator, LuxR family  42.67 
 
 
218 aa  158  1e-37  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_013595  Sros_6211  response regulator receiver protein  37.3 
 
 
239 aa  157  2e-37  Streptosporangium roseum DSM 43021  Bacteria  normal  normal  0.377169 
 
 
-
 
NC_013530  Xcel_2601  two component transcriptional regulator, LuxR family  39.34 
 
 
234 aa  157  2e-37  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  0.1212  n/a   
 
 
-
 
NC_013172  Bfae_20460  response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain  39.17 
 
 
229 aa  157  2e-37  Brachybacterium faecium DSM 4810  Bacteria  normal  0.0212792  n/a   
 
 
-
 
NC_013595  Sros_5619  response regulator receiver protein  42.19 
 
 
226 aa  157  2e-37  Streptosporangium roseum DSM 43021  Bacteria  normal  0.0556461  normal  0.802866 
 
 
-
 
NC_013595  Sros_1523  response regulator receiver protein  40.17 
 
 
215 aa  157  2e-37  Streptosporangium roseum DSM 43021  Bacteria  normal  0.894169  normal  0.0152488 
 
 
-
 
NC_013739  Cwoe_1269  two component transcriptional regulator, LuxR family  43.04 
 
 
226 aa  156  2e-37  Conexibacter woesei DSM 14684  Bacteria  normal  hitchhiker  0.00432991 
 
 
-
 
NC_013521  Sked_03540  response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain  40.52 
 
 
226 aa  157  2e-37  Sanguibacter keddieii DSM 10542  Bacteria  normal  normal 
 
 
-
 
NC_013595  Sros_0232  response regulator receiver protein  38.89 
 
 
213 aa  156  2e-37  Streptosporangium roseum DSM 43021  Bacteria  normal  normal 
 
 
-
 
NC_009921  Franean1_4684  two component LuxR family transcriptional regulator  40.17 
 
 
223 aa  157  2e-37  Frankia sp. EAN1pec  Bacteria  normal  0.51425  normal 
 
 
-
 
NC_014158  Tpau_2872  two component transcriptional regulator, LuxR family  42.06 
 
 
218 aa  157  2e-37  Tsukamurella paurometabola DSM 20162  Bacteria  normal  n/a   
 
 
-
 
NC_013131  Caci_0956  two component transcriptional regulator, LuxR family  41.81 
 
 
221 aa  156  3e-37  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_013595  Sros_0553  response regulator receiver protein  44.21 
 
 
213 aa  156  3e-37  Streptosporangium roseum DSM 43021  Bacteria  normal  0.82888  normal 
 
 
-
 
NC_007777  Francci3_1039  two component LuxR family transcriptional regulator  36.58 
 
 
238 aa  156  4e-37  Frankia sp. CcI3  Bacteria  normal  normal  0.135118 
 
 
-
 
NC_008699  Noca_3643  two component LuxR family transcriptional regulator  41.28 
 
 
215 aa  156  4e-37  Nocardioides sp. JS614  Bacteria  normal  0.516516  n/a   
 
 
-
 
NC_010718  Nther_2325  two component transcriptional regulator, LuxR family  34.18 
 
 
228 aa  156  4e-37  Natranaerobius thermophilus JW/NM-WN-LF  Bacteria  normal  normal 
 
 
-
 
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