11 homologs were found in PanDaTox collection
for query gene Vapar_0537 on replicon NC_012791
Organism: Variovorax paradoxus S110



Page 1 of 1    << first  < prev  1  next >  last >>   


Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_012791  Vapar_0537  hypothetical protein  100 
 
 
160 aa  320  4e-87  Variovorax paradoxus S110  Bacteria  normal  n/a   
 
 
-
 
NC_009439  Pmen_2333  hypothetical protein  50.35 
 
 
144 aa  129  2.0000000000000002e-29  Pseudomonas mendocina ymp  Bacteria  hitchhiker  0.00580597  hitchhiker  0.00510153 
 
 
-
 
NC_008463  PA14_01170  hypothetical protein  44.23 
 
 
149 aa  122  3e-27  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  0.283554  normal 
 
 
-
 
NC_009656  PSPA7_0170  hypothetical protein  46.1 
 
 
149 aa  122  3e-27  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_008686  Pden_2434  hypothetical protein  43.48 
 
 
138 aa  100  6e-21  Paracoccus denitrificans PD1222  Bacteria  normal  0.137351  normal  0.514488 
 
 
-
 
NC_002939  GSU3179  hypothetical protein  56.06 
 
 
81 aa  75.1  0.0000000000003  Geobacter sulfurreducens PCA  Bacteria  normal  n/a   
 
 
-
 
NC_007494  RSP_3472  hypothetical protein  37.3 
 
 
132 aa  73.2  0.000000000001  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  n/a   
 
 
-
 
NC_010524  Lcho_4079  hypothetical protein  37.5 
 
 
163 aa  73.6  0.000000000001  Leptothrix cholodnii SP-6  Bacteria  n/a    hitchhiker  0.0000000241871 
 
 
-
 
NC_009050  Rsph17029_3117  hypothetical protein  45.78 
 
 
132 aa  72.4  0.000000000002  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  0.100633  normal  0.0374199 
 
 
-
 
NC_007650  BTH_II0265  Rhs element Vgr protein  40 
 
 
731 aa  42  0.003  Burkholderia thailandensis E264  Bacteria  normal  n/a   
 
 
-
 
NC_008752  Aave_2736  hypothetical protein  33.96 
 
 
177 aa  40.4  0.01  Acidovorax citrulli AAC00-1  Bacteria  normal  0.0742641  normal 
 
 
-
 
Page 1 of 1    << first  < prev  1  next >  last >>