More than 300 homologs were found in PanDaTox collection
for query gene VEA_003320 on replicon NC_013456
Organism: Vibrio sp. Ex25



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_013456  VEA_003320  transcriptional regulatory protein CitB  100 
 
 
228 aa  462  1e-129  Vibrio sp. Ex25  Bacteria  normal  n/a   
 
 
-
 
NC_009783  VIBHAR_02430  response regulator  87.72 
 
 
228 aa  414  9.999999999999999e-116  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_009457  VC0395_A1209  response regulator  68.14 
 
 
228 aa  320  9.000000000000001e-87  Vibrio cholerae O395  Bacteria  decreased coverage  0.000538312  n/a   
 
 
-
 
NC_011312  VSAL_I2186  HTH-type transcriptional regulator, two-component response regulator  59.11 
 
 
224 aa  275  4e-73  Aliivibrio salmonicida LFI1238  Bacteria  normal  n/a   
 
 
-
 
NC_008709  Ping_1864  response regulator receiver/unknown domain-containing protein  60.45 
 
 
230 aa  271  5.000000000000001e-72  Psychromonas ingrahamii 37  Bacteria  normal  0.134891  normal  0.12527 
 
 
-
 
NC_008740  Maqu_2899  response regulator receiver/unknown domain-containing protein  49.55 
 
 
228 aa  219  1.9999999999999999e-56  Marinobacter aquaeolei VT8  Bacteria  normal  n/a   
 
 
-
 
NC_008554  Sfum_3992  response regulator receiver/unknown domain-containing protein  47.53 
 
 
231 aa  211  7e-54  Syntrophobacter fumaroxidans MPOB  Bacteria  hitchhiker  0.000025564  normal 
 
 
-
 
NC_013173  Dbac_2442  response regulator receiver and unknown domain protein  49.12 
 
 
227 aa  206  3e-52  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  n/a   
 
 
-
 
NC_009997  Sbal195_0939  response regulator receiver  46.64 
 
 
226 aa  203  2e-51  Shewanella baltica OS195  Bacteria  normal  normal  0.0896662 
 
 
-
 
NC_009665  Shew185_0905  response regulator receiver  46.64 
 
 
226 aa  202  3e-51  Shewanella baltica OS185  Bacteria  normal  n/a   
 
 
-
 
NC_008322  Shewmr7_0877  response regulator receiver/unknown domain-containing protein  46.64 
 
 
226 aa  202  3e-51  Shewanella sp. MR-7  Bacteria  normal  0.452942  normal 
 
 
-
 
NC_009052  Sbal_3431  response regulator receiver/unknown domain-containing protein  46.64 
 
 
226 aa  202  4e-51  Shewanella baltica OS155  Bacteria  normal  n/a   
 
 
-
 
NC_008321  Shewmr4_3095  response regulator receiver/unknown domain-containing protein  46.64 
 
 
226 aa  201  5e-51  Shewanella sp. MR-4  Bacteria  normal  0.0654926  normal 
 
 
-
 
NC_011663  Sbal223_0930  response regulator receiver  46.43 
 
 
226 aa  201  7e-51  Shewanella baltica OS223  Bacteria  normal  normal 
 
 
-
 
NC_013411  GYMC61_2788  response regulator receiver and unknown domain protein  45.65 
 
 
230 aa  199  3e-50  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_005957  BT9727_0471  response regulator  42.67 
 
 
230 aa  190  2e-47  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  normal  n/a   
 
 
-
 
NC_010184  BcerKBAB4_0473  response regulator receiver  42.11 
 
 
230 aa  190  2e-47  Bacillus weihenstephanensis KBAB4  Bacteria  normal  n/a   
 
 
-
 
NC_009457  VC0395_A0317  transcriptional regulator CitB  45.09 
 
 
230 aa  189  2.9999999999999997e-47  Vibrio cholerae O395  Bacteria  normal  n/a   
 
 
-
 
NC_011773  BCAH820_0616  response regulator  42.67 
 
 
230 aa  188  5e-47  Bacillus cereus AH820  Bacteria  n/a    normal 
 
 
-
 
NC_011658  BCAH187_A0689  response regulator  42.67 
 
 
230 aa  188  5.999999999999999e-47  Bacillus cereus AH187  Bacteria  normal  n/a   
 
 
-
 
NC_003909  BCE_0621  DNA-binding response regulator  42.22 
 
 
230 aa  186  2e-46  Bacillus cereus ATCC 10987  Bacteria  normal  n/a   
 
 
-
 
NC_011725  BCB4264_A0596  response regulator  42.22 
 
 
230 aa  186  2e-46  Bacillus cereus B4264  Bacteria  normal  n/a   
 
 
-
 
NC_011772  BCG9842_B4743  response regulator  41.78 
 
 
230 aa  184  1.0000000000000001e-45  Bacillus cereus G9842  Bacteria  normal  normal 
 
 
-
 
NC_009832  Spro_3172  response regulator receiver/unknown domain-containing protein  40.18 
 
 
228 aa  176  3e-43  Serratia proteamaculans 568  Bacteria  hitchhiker  0.00871756  normal 
 
 
-
 
NC_012793  GWCH70_0514  response regulator receiver and unknown domain protein  41.82 
 
 
227 aa  175  6e-43  Geobacillus sp. WCH70  Bacteria  normal  n/a   
 
 
-
 
NC_009338  Mflv_3002  response regulator receiver/unknown domain-containing protein  40.64 
 
 
221 aa  169  4e-41  Mycobacterium gilvum PYR-GCK  Bacteria  normal  normal  0.0266393 
 
 
-
 
NC_013235  Namu_1040  response regulator receiver and unknown domain protein  39.55 
 
 
228 aa  168  5e-41  Nakamurella multipartita DSM 44233  Bacteria  normal  normal 
 
 
-
 
NC_008726  Mvan_3504  response regulator receiver/unknown domain-containing protein  40.64 
 
 
221 aa  168  6e-41  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  normal  0.0894605 
 
 
-
 
NC_008146  Mmcs_3239  response regulator receiver/unknown domain-containing protein  39.91 
 
 
220 aa  167  1e-40  Mycobacterium sp. MCS  Bacteria  normal  0.926137  n/a   
 
 
-
 
NC_008705  Mkms_3301  response regulator receiver/unknown domain-containing protein  39.91 
 
 
220 aa  167  1e-40  Mycobacterium sp. KMS  Bacteria  normal  normal  0.0147948 
 
 
-
 
NC_009077  Mjls_3250  response regulator receiver/unknown domain-containing protein  39.91 
 
 
220 aa  167  2e-40  Mycobacterium sp. JLS  Bacteria  normal  0.237703  normal 
 
 
-
 
NC_012912  Dd1591_2326  response regulator receiver and unknown domain protein  39.19 
 
 
241 aa  164  1.0000000000000001e-39  Dickeya zeae Ech1591  Bacteria  normal  0.500594  n/a   
 
 
-
 
NC_011772  BCG9842_B4345  response regulator  39.64 
 
 
225 aa  164  1.0000000000000001e-39  Bacillus cereus G9842  Bacteria  normal  0.158783  hitchhiker  0.00000000000467704 
 
 
-
 
CP001509  ECD_00590  DNA-binding response regulator in two-component regulatory system with citA  37.05 
 
 
226 aa  163  2.0000000000000002e-39  Escherichia coli BL21(DE3)  Bacteria  normal  n/a   
 
 
-
 
CP001637  EcDH1_3005  response regulator receiver and unknown domain protein  37.05 
 
 
226 aa  163  2.0000000000000002e-39  Escherichia coli DH1  Bacteria  normal  n/a   
 
 
-
 
NC_010468  EcolC_3024  two-component response regulator DpiA  37.05 
 
 
226 aa  163  2.0000000000000002e-39  Escherichia coli ATCC 8739  Bacteria  normal  0.284092  normal 
 
 
-
 
NC_011353  ECH74115_0708  two-component response regulator DpiA  37.05 
 
 
226 aa  163  2.0000000000000002e-39  Escherichia coli O157:H7 str. EC4115  Bacteria  normal  0.767771  normal 
 
 
-
 
NC_012892  B21_00579  hypothetical protein  37.05 
 
 
226 aa  163  2.0000000000000002e-39  Escherichia coli BL21  Bacteria  normal  n/a   
 
 
-
 
NC_010498  EcSMS35_0639  two-component response regulator DpiA  37.05 
 
 
226 aa  163  2.0000000000000002e-39  Escherichia coli SMS-3-5  Bacteria  normal  normal 
 
 
-
 
NC_010658  SbBS512_E0535  two-component response regulator DpiA  37.05 
 
 
226 aa  163  2.0000000000000002e-39  Shigella boydii CDC 3083-94  Bacteria  normal  n/a   
 
 
-
 
NC_009800  EcHS_A0671  two-component response regulator DpiA  37.05 
 
 
226 aa  163  2.0000000000000002e-39  Escherichia coli HS  Bacteria  hitchhiker  0.00334128  n/a   
 
 
-
 
NC_009801  EcE24377A_0643  two-component response regulator DpiA  37.05 
 
 
226 aa  163  2.0000000000000002e-39  Escherichia coli E24377A  Bacteria  normal  0.0236338  n/a   
 
 
-
 
NC_011094  SeSA_A0785  two-component response regulator DpiA  37.61 
 
 
226 aa  162  3e-39  Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633  Bacteria  normal  0.124053  normal  0.689385 
 
 
-
 
NC_011080  SNSL254_A0681  two-component response regulator DpiA  37.61 
 
 
226 aa  162  3e-39  Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  normal  normal 
 
 
-
 
NC_005957  BT9727_0838  response regulator  39.19 
 
 
225 aa  162  4.0000000000000004e-39  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  normal  0.873813  n/a   
 
 
-
 
NC_011149  SeAg_B0667  two-component response regulator DpiA  37.61 
 
 
226 aa  162  4.0000000000000004e-39  Salmonella enterica subsp. enterica serovar Agona str. SL483  Bacteria  normal  0.182273  n/a   
 
 
-
 
NC_011083  SeHA_C0741  two-component response regulator DpiA  37.61 
 
 
226 aa  162  4.0000000000000004e-39  Salmonella enterica subsp. enterica serovar Heidelberg str. SL476  Bacteria  normal  0.21792  normal 
 
 
-
 
NC_013595  Sros_8064  response regulator of citrate/malate metabolism  40.09 
 
 
224 aa  161  6e-39  Streptosporangium roseum DSM 43021  Bacteria  normal  normal 
 
 
-
 
NC_010184  BcerKBAB4_0812  response regulator receiver  39.19 
 
 
225 aa  161  6e-39  Bacillus weihenstephanensis KBAB4  Bacteria  normal  n/a   
 
 
-
 
NC_013411  GYMC61_1376  response regulator receiver and unknown domain protein  39.01 
 
 
226 aa  160  1e-38  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_012880  Dd703_2225  response regulator receiver and unknown domain protein  37.84 
 
 
241 aa  159  3e-38  Dickeya dadantii Ech703  Bacteria  normal  0.381743  n/a   
 
 
-
 
NC_011773  BCAH820_1005  response regulator  38.29 
 
 
225 aa  158  6e-38  Bacillus cereus AH820  Bacteria  n/a    unclonable  1.38637e-62 
 
 
-
 
NC_011658  BCAH187_A1090  response regulator  38.29 
 
 
225 aa  158  6e-38  Bacillus cereus AH187  Bacteria  normal  n/a   
 
 
-
 
NC_008541  Arth_1397  response regulator receiver/unknown domain-containing protein  39.37 
 
 
228 aa  157  1e-37  Arthrobacter sp. FB24  Bacteria  normal  0.362742  n/a   
 
 
-
 
NC_003909  BCE_1010  response regulator  38.74 
 
 
225 aa  157  2e-37  Bacillus cereus ATCC 10987  Bacteria  normal  n/a   
 
 
-
 
NC_011094  SeSA_A0058  transcriptional regulatory protein CitB  37.27 
 
 
228 aa  156  2e-37  Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633  Bacteria  normal  0.440261  normal 
 
 
-
 
NC_011083  SeHA_C0056  transcriptional regulator CitB  37.27 
 
 
228 aa  156  2e-37  Salmonella enterica subsp. enterica serovar Heidelberg str. SL476  Bacteria  normal  0.993904  normal 
 
 
-
 
NC_011149  SeAg_B0059  transcriptional regulatory protein CitB  37.27 
 
 
228 aa  156  2e-37  Salmonella enterica subsp. enterica serovar Agona str. SL483  Bacteria  normal  n/a   
 
 
-
 
NC_013757  Gobs_3623  response regulator receiver and unknown domain protein  39.01 
 
 
232 aa  155  3e-37  Geodermatophilus obscurus DSM 43160  Bacteria  normal  0.796239  n/a   
 
 
-
 
NC_011205  SeD_A0057  transcriptional regulator CitB  37.27 
 
 
228 aa  156  3e-37  Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853  Bacteria  normal  0.743375  normal  0.317361 
 
 
-
 
NC_005945  BAS0870  response regulator  38.74 
 
 
225 aa  155  4e-37  Bacillus anthracis str. Sterne  Bacteria  normal  n/a   
 
 
-
 
NC_007530  GBAA_0924  response regulator  38.74 
 
 
225 aa  155  4e-37  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  n/a   
 
 
-
 
NC_011830  Dhaf_4644  response regulator receiver and unknown domain protein  36.73 
 
 
231 aa  155  4e-37  Desulfitobacterium hafniense DCB-2  Bacteria  normal  0.0210142  n/a   
 
 
-
 
NC_011080  SNSL254_A0057  transcriptional regulator CitB  36.82 
 
 
228 aa  155  4e-37  Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  normal  normal  0.651756 
 
 
-
 
NC_012917  PC1_1748  response regulator receiver and unknown domain protein  36.2 
 
 
233 aa  155  6e-37  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  0.013924  n/a   
 
 
-
 
NC_011725  BCB4264_A0966  response regulator  38.29 
 
 
225 aa  155  7e-37  Bacillus cereus B4264  Bacteria  normal  n/a   
 
 
-
 
NC_009436  Ent638_3379  response regulator receiver/unknown domain-containing protein  37.5 
 
 
230 aa  154  8e-37  Enterobacter sp. 638  Bacteria  normal  normal  0.440522 
 
 
-
 
NC_013421  Pecwa_2020  response regulator receiver and unknown domain protein  36.2 
 
 
233 aa  154  8e-37  Pectobacterium wasabiae WPP163  Bacteria  normal  0.105388  n/a   
 
 
-
 
NC_009438  Sputcn32_0349  response regulator receiver  38.18 
 
 
225 aa  153  2e-36  Shewanella putrefaciens CN-32  Bacteria  normal  n/a   
 
 
-
 
NC_009832  Spro_3732  response regulator receiver/unknown domain-containing protein  36.77 
 
 
229 aa  153  2e-36  Serratia proteamaculans 568  Bacteria  normal  normal  0.655402 
 
 
-
 
NC_009654  Mmwyl1_2791  response regulator receiver/unknown domain-containing protein  35.71 
 
 
228 aa  152  2.9999999999999998e-36  Marinomonas sp. MWYL1  Bacteria  hitchhiker  0.00727267  normal 
 
 
-
 
NC_011830  Dhaf_1239  response regulator receiver and unknown domain protein  39.37 
 
 
225 aa  151  1e-35  Desulfitobacterium hafniense DCB-2  Bacteria  normal  0.0291668  n/a   
 
 
-
 
NC_008025  Dgeo_0835  response regulator receiver/unknown domain-containing protein  38.81 
 
 
233 aa  151  1e-35  Deinococcus geothermalis DSM 11300  Bacteria  normal  0.256612  normal  0.0817521 
 
 
-
 
NC_013235  Namu_1163  response regulator receiver and unknown domain protein  38.64 
 
 
231 aa  148  7e-35  Nakamurella multipartita DSM 44233  Bacteria  normal  normal 
 
 
-
 
NC_008025  Dgeo_0354  response regulator receiver/unknown domain-containing protein  39.37 
 
 
217 aa  148  7e-35  Deinococcus geothermalis DSM 11300  Bacteria  normal  normal  0.435973 
 
 
-
 
NC_013093  Amir_3706  response regulator receiver and unknown domain protein  38.16 
 
 
226 aa  147  1.0000000000000001e-34  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_011886  Achl_0598  response regulator receiver and unknown domain protein  40.81 
 
 
223 aa  147  1.0000000000000001e-34  Arthrobacter chlorophenolicus A6  Bacteria  n/a    hitchhiker  0.00972259 
 
 
-
 
NC_013131  Caci_5599  response regulator receiver and unknown domain protein  37.39 
 
 
243 aa  145  4.0000000000000006e-34  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.0782544  normal  0.532525 
 
 
-
 
NC_013131  Caci_8199  response regulator receiver and unknown domain protein  37.22 
 
 
226 aa  145  4.0000000000000006e-34  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_009674  Bcer98_0497  response regulator receiver  34.98 
 
 
235 aa  144  2e-33  Bacillus cytotoxicus NVH 391-98  Bacteria  normal  n/a   
 
 
-
 
NC_011772  BCG9842_B4724  response regulator  35.53 
 
 
235 aa  142  5e-33  Bacillus cereus G9842  Bacteria  normal  0.240866  normal 
 
 
-
 
NC_013124  Afer_0508  response regulator receiver and unknown domain protein  37.05 
 
 
224 aa  140  1.9999999999999998e-32  Acidimicrobium ferrooxidans DSM 10331  Bacteria  normal  0.957096  n/a   
 
 
-
 
NC_011725  BCB4264_A0615  response regulator  34.53 
 
 
235 aa  139  3.9999999999999997e-32  Bacillus cereus B4264  Bacteria  normal  n/a   
 
 
-
 
NC_013159  Svir_25720  response regulator of citrate/malate metabolism  37.17 
 
 
231 aa  139  3.9999999999999997e-32  Saccharomonospora viridis DSM 43017  Bacteria  normal  normal 
 
 
-
 
NC_012912  Dd1591_4101  DNA-binding transcriptional activator DcuR  35.71 
 
 
240 aa  138  7.999999999999999e-32  Dickeya zeae Ech1591  Bacteria  normal  n/a   
 
 
-
 
NC_010184  BcerKBAB4_0491  response regulator receiver  34.22 
 
 
235 aa  138  8.999999999999999e-32  Bacillus weihenstephanensis KBAB4  Bacteria  normal  n/a   
 
 
-
 
NC_005945  BAS0546  response regulator  34.08 
 
 
235 aa  138  8.999999999999999e-32  Bacillus anthracis str. Sterne  Bacteria  hitchhiker  0.000213708  n/a   
 
 
-
 
NC_013595  Sros_3868  putative response regulator ofcitrate/malate metabolism  39.19 
 
 
223 aa  137  1e-31  Streptosporangium roseum DSM 43021  Bacteria  normal  0.0941559  normal  0.017891 
 
 
-
 
NC_006274  BCZK0490  response regulator  33.63 
 
 
235 aa  136  2e-31  Bacillus cereus E33L  Bacteria  hitchhiker  0.00461557  n/a   
 
 
-
 
NC_013159  Svir_37850  response regulator of citrate/malate metabolism  37.18 
 
 
227 aa  137  2e-31  Saccharomonospora viridis DSM 43017  Bacteria  normal  normal  0.277898 
 
 
-
 
NC_005957  BT9727_0488  response regulator  33.63 
 
 
235 aa  136  3.0000000000000003e-31  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  normal  n/a   
 
 
-
 
NC_008261  CPF_0512  two-component response regulator  34.98 
 
 
222 aa  136  3.0000000000000003e-31  Clostridium perfringens ATCC 13124  Bacteria  normal  n/a   
 
 
-
 
NC_011773  BCAH820_0633  response regulator  33.63 
 
 
235 aa  136  3.0000000000000003e-31  Bacillus cereus AH820  Bacteria  n/a    normal 
 
 
-
 
NC_008262  CPR_0501  two-component response regulator  34.98 
 
 
222 aa  135  4e-31  Clostridium perfringens SM101  Bacteria  normal  n/a   
 
 
-
 
NC_003909  BCE_0640  response regulator  33.78 
 
 
235 aa  135  5e-31  Bacillus cereus ATCC 10987  Bacteria  normal  n/a   
 
 
-
 
NC_009832  Spro_1958  DNA-binding transcriptional activator DcuR  37.39 
 
 
237 aa  134  9.999999999999999e-31  Serratia proteamaculans 568  Bacteria  normal  normal  0.0209132 
 
 
-
 
NC_011830  Dhaf_4310  response regulator receiver and unknown domain protein  33.94 
 
 
241 aa  132  3e-30  Desulfitobacterium hafniense DCB-2  Bacteria  hitchhiker  0.000000000000453171  n/a   
 
 
-
 
NC_012917  PC1_0039  DNA-binding transcriptional activator DcuR  34.38 
 
 
240 aa  132  5e-30  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  n/a   
 
 
-
 
NC_009436  Ent638_2556  DNA-binding transcriptional activator DcuR  33.48 
 
 
239 aa  132  6e-30  Enterobacter sp. 638  Bacteria  normal  normal  0.109677 
 
 
-
 
NC_009664  Krad_0064  response regulator receiver and unknown domain protein  34.21 
 
 
238 aa  131  9e-30  Kineococcus radiotolerans SRS30216  Bacteria  normal  0.803731  normal 
 
 
-
 
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