More than 300 homologs were found in PanDaTox collection
for query gene Tpau_0097 on replicon NC_014158
Organism: Tsukamurella paurometabola DSM 20162



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_014158  Tpau_0097  two component transcriptional regulator, winged helix family  100 
 
 
235 aa  458  9.999999999999999e-129  Tsukamurella paurometabola DSM 20162  Bacteria  normal  n/a   
 
 
-
 
NC_013131  Caci_0793  two component transcriptional regulator, winged helix family  55.98 
 
 
225 aa  228  5e-59  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_013595  Sros_0260  response regulator receiver protein  51.71 
 
 
224 aa  214  8e-55  Streptosporangium roseum DSM 43021  Bacteria  normal  0.820416  normal 
 
 
-
 
NC_013595  Sros_8520  response regulator receiver protein  49.79 
 
 
224 aa  195  5.000000000000001e-49  Streptosporangium roseum DSM 43021  Bacteria  normal  normal  0.697367 
 
 
-
 
NC_014165  Tbis_3089  winged helix family two component transcriptional regulator  48.51 
 
 
224 aa  191  6e-48  Thermobispora bispora DSM 43833  Bacteria  normal  0.136258  normal 
 
 
-
 
NC_013739  Cwoe_0295  two component transcriptional regulator, winged helix family  51.28 
 
 
227 aa  184  1.0000000000000001e-45  Conexibacter woesei DSM 14684  Bacteria  decreased coverage  0.00362669  normal  0.695564 
 
 
-
 
NC_010184  BcerKBAB4_5259  two component transcriptional regulator  41.35 
 
 
235 aa  173  1.9999999999999998e-42  Bacillus weihenstephanensis KBAB4  Bacteria  hitchhiker  0.000559572  n/a   
 
 
-
 
NC_010424  Daud_1897  two component transcriptional regulator  44.59 
 
 
227 aa  173  1.9999999999999998e-42  Candidatus Desulforudis audaxviator MP104C  Bacteria  normal  0.151466  n/a   
 
 
-
 
NC_011898  Ccel_1892  two component transcriptional regulator, winged helix family  39.39 
 
 
228 aa  172  2.9999999999999996e-42  Clostridium cellulolyticum H10  Bacteria  hitchhiker  0.0000392  n/a   
 
 
-
 
NC_009674  Bcer98_4006  two component transcriptional regulator  41.35 
 
 
235 aa  171  9e-42  Bacillus cytotoxicus NVH 391-98  Bacteria  normal  0.010356  n/a   
 
 
-
 
NC_003909  BCE_5615  DNA-binding response regulator YycF  41.35 
 
 
235 aa  171  1e-41  Bacillus cereus ATCC 10987  Bacteria  normal  n/a   
 
 
-
 
NC_005945  BAS5319  DNA-binding response regulator YycF  41.35 
 
 
235 aa  171  1e-41  Bacillus anthracis str. Sterne  Bacteria  normal  0.169223  n/a   
 
 
-
 
NC_005957  BT9727_5147  response regulator  41.35 
 
 
235 aa  171  1e-41  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  hitchhiker  0.00168683  n/a   
 
 
-
 
NC_006274  BCZK5163  response regulator  41.35 
 
 
235 aa  171  1e-41  Bacillus cereus E33L  Bacteria  hitchhiker  0.00196509  n/a   
 
 
-
 
NC_012034  Athe_0080  two component transcriptional regulator, winged helix family  41.13 
 
 
230 aa  171  1e-41  Anaerocellum thermophilum DSM 6725  Bacteria  normal  n/a   
 
 
-
 
NC_007530  GBAA_5715  DNA-binding response regulator YycF  41.35 
 
 
235 aa  171  1e-41  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  0.656882  n/a   
 
 
-
 
NC_011658  BCAH187_A5650  DNA-binding response regulator YycF  41.35 
 
 
235 aa  171  1e-41  Bacillus cereus AH187  Bacteria  hitchhiker  0.00563499  n/a   
 
 
-
 
NC_013947  Snas_0580  two component transcriptional regulator, winged helix family  42.26 
 
 
226 aa  171  1e-41  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal 
 
 
-
 
NC_011773  BCAH820_5572  DNA-binding response regulator YycF  41.35 
 
 
235 aa  171  1e-41  Bacillus cereus AH820  Bacteria  n/a    hitchhiker  1.81316e-29 
 
 
-
 
NC_012034  Athe_1456  two component transcriptional regulator, winged helix family  39.48 
 
 
223 aa  171  1e-41  Anaerocellum thermophilum DSM 6725  Bacteria  decreased coverage  0.000183373  n/a   
 
 
-
 
NC_011725  BCB4264_A5589  DNA-binding response regulator YycF  41.35 
 
 
235 aa  171  1e-41  Bacillus cereus B4264  Bacteria  normal  0.0469644  n/a   
 
 
-
 
NC_011772  BCG9842_B5346  DNA-binding response regulator YycF  40.93 
 
 
235 aa  170  2e-41  Bacillus cereus G9842  Bacteria  hitchhiker  0.000000234523  hitchhiker  0.00000000000323141 
 
 
-
 
NC_009523  RoseRS_3818  two component transcriptional regulator  45.34 
 
 
230 aa  170  2e-41  Roseiflexus sp. RS-1  Bacteria  normal  0.386967  normal  0.165932 
 
 
-
 
NC_008699  Noca_4046  response regulator receiver  43.16 
 
 
225 aa  170  2e-41  Nocardioides sp. JS614  Bacteria  normal  n/a   
 
 
-
 
NC_009012  Cthe_1288  two component transcriptional regulator  37.66 
 
 
228 aa  170  2e-41  Clostridium thermocellum ATCC 27405  Bacteria  decreased coverage  0.00000000128008  n/a   
 
 
-
 
NC_009253  Dred_1903  two component transcriptional regulator  41.2 
 
 
230 aa  169  3e-41  Desulfotomaculum reducens MI-1  Bacteria  normal  n/a   
 
 
-
 
NC_010424  Daud_1419  two component transcriptional regulator  44.12 
 
 
231 aa  168  7e-41  Candidatus Desulforudis audaxviator MP104C  Bacteria  normal  0.0720218  n/a   
 
 
-
 
NC_013757  Gobs_2351  two component transcriptional regulator, winged helix family  43.1 
 
 
231 aa  167  1e-40  Geodermatophilus obscurus DSM 43160  Bacteria  normal  0.274912  n/a   
 
 
-
 
NC_008578  Acel_1832  two component transcriptional regulator  44.83 
 
 
245 aa  166  2e-40  Acidothermus cellulolyticus 11B  Bacteria  normal  0.366424  normal  0.561636 
 
 
-
 
NC_013385  Adeg_1028  two component transcriptional regulator, winged helix family  43.04 
 
 
237 aa  164  1.0000000000000001e-39  Ammonifex degensii KC4  Bacteria  normal  n/a   
 
 
-
 
NC_009767  Rcas_0997  two component transcriptional regulator  44.07 
 
 
230 aa  164  2.0000000000000002e-39  Roseiflexus castenholzii DSM 13941  Bacteria  normal  0.679101  normal 
 
 
-
 
NC_010718  Nther_2903  two component transcriptional regulator, winged helix family  39.66 
 
 
234 aa  163  2.0000000000000002e-39  Natranaerobius thermophilus JW/NM-WN-LF  Bacteria  normal  normal 
 
 
-
 
NC_013216  Dtox_1077  two component transcriptional regulator, winged helix family  40.34 
 
 
235 aa  163  2.0000000000000002e-39  Desulfotomaculum acetoxidans DSM 771  Bacteria  normal  normal 
 
 
-
 
NC_009972  Haur_0804  two component transcriptional regulator  42.8 
 
 
236 aa  163  2.0000000000000002e-39  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  0.324741  n/a   
 
 
-
 
NC_010001  Cphy_0154  two component transcriptional regulator  35.62 
 
 
238 aa  162  3e-39  Clostridium phytofermentans ISDg  Bacteria  normal  0.644268  n/a   
 
 
-
 
NC_009253  Dred_0707  two component transcriptional regulator  41.18 
 
 
232 aa  162  3e-39  Desulfotomaculum reducens MI-1  Bacteria  normal  n/a   
 
 
-
 
NC_007404  Tbd_0216  two component transcriptional regulator  42.49 
 
 
230 aa  162  4.0000000000000004e-39  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  normal  0.305183 
 
 
-
 
NC_009831  Ssed_3303  two component transcriptional regulator  41.35 
 
 
229 aa  162  4.0000000000000004e-39  Shewanella sediminis HAW-EB3  Bacteria  unclonable  0.0000000702519  hitchhiker  0.00000106408 
 
 
-
 
NC_014165  Tbis_0499  winged helix family two component transcriptional regulator  41.88 
 
 
229 aa  162  4.0000000000000004e-39  Thermobispora bispora DSM 43833  Bacteria  normal  normal 
 
 
-
 
NC_011831  Cagg_1100  two component transcriptional regulator, winged helix family  41.88 
 
 
236 aa  162  5.0000000000000005e-39  Chloroflexus aggregans DSM 9485  Bacteria  normal  unclonable  0.0000000182155 
 
 
-
 
NC_013595  Sros_6806  response regulator receiver protein  45.89 
 
 
238 aa  162  5.0000000000000005e-39  Streptosporangium roseum DSM 43021  Bacteria  normal  0.846374  normal 
 
 
-
 
NC_010718  Nther_0984  two component transcriptional regulator, winged helix family  38.27 
 
 
246 aa  162  5.0000000000000005e-39  Natranaerobius thermophilus JW/NM-WN-LF  Bacteria  normal  normal  0.0723779 
 
 
-
 
NC_011830  Dhaf_1756  two component transcriptional regulator, winged helix family  40.62 
 
 
230 aa  161  9e-39  Desulfitobacterium hafniense DCB-2  Bacteria  normal  0.769657  n/a   
 
 
-
 
NC_011831  Cagg_3302  two component transcriptional regulator, winged helix family  41.81 
 
 
231 aa  161  1e-38  Chloroflexus aggregans DSM 9485  Bacteria  normal  hitchhiker  0.000343135 
 
 
-
 
NC_013411  GYMC61_3538  two component transcriptional regulator, winged helix family  40.52 
 
 
237 aa  160  2e-38  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_012793  GWCH70_3409  two component transcriptional regulator, winged helix family  40.52 
 
 
236 aa  159  2e-38  Geobacillus sp. WCH70  Bacteria  normal  n/a   
 
 
-
 
NC_013170  Ccur_02230  response regulator with CheY-like receiver domain protein and winged-helix DNA-binding domain protein  38.36 
 
 
229 aa  160  2e-38  Cryptobacterium curtum DSM 15641  Bacteria  normal  normal 
 
 
-
 
NC_007520  Tcr_0541  two component transcriptional regulator  40.68 
 
 
230 aa  159  3e-38  Thiomicrospira crunogena XCL-2  Bacteria  normal  n/a   
 
 
-
 
NC_013595  Sros_0961  response regulator receiver protein  41.88 
 
 
229 aa  159  3e-38  Streptosporangium roseum DSM 43021  Bacteria  normal  normal 
 
 
-
 
NC_009921  Franean1_6145  two component transcriptional regulator  41.63 
 
 
228 aa  159  4e-38  Frankia sp. EAN1pec  Bacteria  normal  normal  0.788201 
 
 
-
 
NC_010816  BLD_0042  response regulator  41.7 
 
 
240 aa  159  4e-38  Bifidobacterium longum DJO10A  Bacteria  normal  0.382747  n/a   
 
 
-
 
NC_010814  Glov_0588  two component transcriptional regulator, winged helix family  39.41 
 
 
226 aa  159  4e-38  Geobacter lovleyi SZ  Bacteria  normal  0.944339  n/a   
 
 
-
 
NC_013216  Dtox_2625  two component transcriptional regulator, winged helix family  41.63 
 
 
237 aa  159  4e-38  Desulfotomaculum acetoxidans DSM 771  Bacteria  decreased coverage  0.00000254862  normal 
 
 
-
 
NC_013093  Amir_3871  two component transcriptional regulator, winged helix family  43.88 
 
 
227 aa  159  4e-38  Actinosynnema mirum DSM 43827  Bacteria  hitchhiker  0.0000000473157  n/a   
 
 
-
 
NC_013205  Aaci_2922  two component transcriptional regulator, winged helix family  42.24 
 
 
230 aa  159  4e-38  Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria  normal  0.221617  n/a   
 
 
-
 
NC_008578  Acel_0088  two component transcriptional regulator  41.45 
 
 
228 aa  159  4e-38  Acidothermus cellulolyticus 11B  Bacteria  normal  normal 
 
 
-
 
NC_011830  Dhaf_2193  two component transcriptional regulator, winged helix family  40.08 
 
 
237 aa  159  4e-38  Desulfitobacterium hafniense DCB-2  Bacteria  normal  0.0620475  n/a   
 
 
-
 
NC_009972  Haur_4156  two component transcriptional regulator  42.44 
 
 
232 aa  159  4e-38  Herpetosiphon aurantiacus ATCC 23779  Bacteria  decreased coverage  0.0000307056  n/a   
 
 
-
 
NC_008554  Sfum_2892  two component transcriptional regulator  41.28 
 
 
227 aa  159  5e-38  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  normal  0.0239565 
 
 
-
 
NC_009767  Rcas_0353  two component transcriptional regulator  49.47 
 
 
230 aa  158  6e-38  Roseiflexus castenholzii DSM 13941  Bacteria  normal  normal  0.683455 
 
 
-
 
NC_008261  CPF_2504  DNA-binding response regulator  36.6 
 
 
227 aa  158  6e-38  Clostridium perfringens ATCC 13124  Bacteria  normal  n/a   
 
 
-
 
NC_008531  LEUM_1950  DNA-binding response regulator  40.68 
 
 
235 aa  158  6e-38  Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293  Bacteria  normal  0.100456  n/a   
 
 
-
 
NC_013131  Caci_8215  two component transcriptional regulator, winged helix family  42.02 
 
 
226 aa  158  6e-38  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_008262  CPR_2210  DNA-binding response regulator  36.6 
 
 
227 aa  158  8e-38  Clostridium perfringens SM101  Bacteria  normal  n/a   
 
 
-
 
NC_002976  SERP2534  DNA-binding response regulator YycF  40.25 
 
 
233 aa  157  1e-37  Staphylococcus epidermidis RP62A  Bacteria  normal  n/a   
 
 
-
 
NC_007644  Moth_0070  two component transcriptional regulator  40.34 
 
 
229 aa  157  1e-37  Moorella thermoacetica ATCC 39073  Bacteria  normal  normal  0.834843 
 
 
-
 
NC_010320  Teth514_0588  two component transcriptional regulator  39.15 
 
 
227 aa  157  1e-37  Thermoanaerobacter sp. X514  Bacteria  unclonable  0.000000000451147  n/a   
 
 
-
 
NC_013385  Adeg_1011  two component transcriptional regulator, winged helix family  41.18 
 
 
231 aa  157  1e-37  Ammonifex degensii KC4  Bacteria  normal  n/a   
 
 
-
 
NC_011898  Ccel_3394  two component transcriptional regulator, winged helix family  39.06 
 
 
230 aa  157  1e-37  Clostridium cellulolyticum H10  Bacteria  normal  0.103692  n/a   
 
 
-
 
NC_009511  Swit_3577  two component transcriptional regulator  42.42 
 
 
232 aa  156  2e-37  Sphingomonas wittichii RW1  Bacteria  normal  normal  0.70324 
 
 
-
 
NC_013172  Bfae_09290  response regulator with CheY-like receiver domain and winged-helix DNA-binding domain  42.19 
 
 
229 aa  156  2e-37  Brachybacterium faecium DSM 4810  Bacteria  normal  n/a   
 
 
-
 
NC_007964  Nham_0640  two component transcriptional regulator  42.67 
 
 
233 aa  157  2e-37  Nitrobacter hamburgensis X14  Bacteria  normal  0.772339  n/a   
 
 
-
 
NC_008148  Rxyl_0378  two component transcriptional regulator  40 
 
 
234 aa  157  2e-37  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  n/a   
 
 
-
 
NC_014210  Ndas_4322  two component transcriptional regulator, winged helix family  41.28 
 
 
231 aa  156  2e-37  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  normal 
 
 
-
 
NC_013510  Tcur_0700  two component transcriptional regulator, winged helix family  41.03 
 
 
226 aa  156  2e-37  Thermomonospora curvata DSM 43183  Bacteria  normal  0.768939  n/a   
 
 
-
 
NC_009253  Dred_2981  two component transcriptional regulator  39.13 
 
 
229 aa  156  2e-37  Desulfotomaculum reducens MI-1  Bacteria  unclonable  0.0000000201285  n/a   
 
 
-
 
NC_004116  SAG0719  DNA-binding response regulator  38.91 
 
 
236 aa  156  3e-37  Streptococcus agalactiae 2603V/R  Bacteria  normal  0.0951718  n/a   
 
 
-
 
NC_013216  Dtox_2915  two component transcriptional regulator, winged helix family  38.7 
 
 
225 aa  156  3e-37  Desulfotomaculum acetoxidans DSM 771  Bacteria  normal  0.892207  normal  0.300351 
 
 
-
 
NC_007519  Dde_2387  two component transcriptional regulator  40.85 
 
 
229 aa  156  3e-37  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  hitchhiker  0.00115026  n/a   
 
 
-
 
NC_011830  Dhaf_1285  two component transcriptional regulator, winged helix family  37.93 
 
 
234 aa  156  3e-37  Desulfitobacterium hafniense DCB-2  Bacteria  normal  0.477652  n/a   
 
 
-
 
NC_009012  Cthe_1916  two component transcriptional regulator  35.59 
 
 
228 aa  156  3e-37  Clostridium thermocellum ATCC 27405  Bacteria  normal  0.400732  n/a   
 
 
-
 
NC_013411  GYMC61_0785  two component transcriptional regulator, winged helix family  41.18 
 
 
235 aa  156  3e-37  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_009632  SaurJH1_0018  response regulator receiver  40.52 
 
 
233 aa  155  4e-37  Staphylococcus aureus subsp. aureus JH1  Bacteria  normal  n/a   
 
 
-
 
NC_009487  SaurJH9_0018  two component transcriptional regulator  40.52 
 
 
233 aa  155  4e-37  Staphylococcus aureus subsp. aureus JH9  Bacteria  normal  0.70243  n/a   
 
 
-
 
NC_010506  Swoo_3452  two component transcriptional regulator  40.93 
 
 
229 aa  155  4e-37  Shewanella woodyi ATCC 51908  Bacteria  hitchhiker  0.00686704  hitchhiker  0.000158375 
 
 
-
 
NC_011831  Cagg_0243  two component transcriptional regulator, winged helix family  44.07 
 
 
235 aa  155  4e-37  Chloroflexus aggregans DSM 9485  Bacteria  normal  0.0646165  normal 
 
 
-
 
NC_009380  Strop_0967  response regulator receiver  42.86 
 
 
229 aa  155  5.0000000000000005e-37  Salinispora tropica CNB-440  Bacteria  normal  0.359698  normal  0.873584 
 
 
-
 
NC_013205  Aaci_1728  two component transcriptional regulator, winged helix family  40.95 
 
 
233 aa  155  6e-37  Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria  normal  n/a   
 
 
-
 
NC_009665  Shew185_1364  two component transcriptional regulator  40.51 
 
 
229 aa  155  7e-37  Shewanella baltica OS185  Bacteria  hitchhiker  0.0000657343  n/a   
 
 
-
 
NC_011830  Dhaf_0940  two component transcriptional regulator, winged helix family  42.13 
 
 
237 aa  155  7e-37  Desulfitobacterium hafniense DCB-2  Bacteria  normal  0.324642  n/a   
 
 
-
 
NC_004347  SO_1558  phosphate regulon response regulator PhoB  40.51 
 
 
239 aa  155  7e-37  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_013169  Ksed_08590  response regulator with CheY-like receiver domain and winged-helix DNA-binding domain  42.61 
 
 
239 aa  155  7e-37  Kytococcus sedentarius DSM 20547  Bacteria  normal  normal  0.857083 
 
 
-
 
NC_013223  Dret_0467  two component transcriptional regulator, winged helix family  40.25 
 
 
230 aa  155  7e-37  Desulfohalobium retbaense DSM 5692  Bacteria  normal  normal 
 
 
-
 
NC_007644  Moth_0827  two component transcriptional regulator  41.53 
 
 
256 aa  155  7e-37  Moorella thermoacetica ATCC 39073  Bacteria  hitchhiker  0.00211389  normal  0.244563 
 
 
-
 
NC_009953  Sare_0404  two component transcriptional regulator  40.6 
 
 
227 aa  155  7e-37  Salinispora arenicola CNS-205  Bacteria  normal  hitchhiker  0.00316128 
 
 
-
 
NC_009997  Sbal195_1403  two component transcriptional regulator  40.51 
 
 
229 aa  155  7e-37  Shewanella baltica OS195  Bacteria  hitchhiker  0.00109837  normal  0.0219543 
 
 
-
 
NC_009052  Sbal_1378  two component transcriptional regulator  40.51 
 
 
229 aa  155  7e-37  Shewanella baltica OS155  Bacteria  hitchhiker  0.00000291119  n/a   
 
 
-
 
NC_011663  Sbal223_2981  two component transcriptional regulator PhoB, winged helix family  40.51 
 
 
229 aa  155  7e-37  Shewanella baltica OS223  Bacteria  hitchhiker  0.000000220801  hitchhiker  0.00121997 
 
 
-
 
NC_008321  Shewmr4_2709  two component transcriptional regulator  40.51 
 
 
229 aa  155  8e-37  Shewanella sp. MR-4  Bacteria  hitchhiker  0.00000407229  decreased coverage  0.000000263688 
 
 
-
 
NC_008322  Shewmr7_2777  two component transcriptional regulator  40.51 
 
 
229 aa  155  8e-37  Shewanella sp. MR-7  Bacteria  unclonable  0.000000628627  decreased coverage  0.000208697 
 
 
-
 
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