More than 300 homologs were found in PanDaTox collection
for query gene Tfu_0017 on replicon NC_007333
Organism: Thermobifida fusca YX



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_007333  Tfu_0017  cell envelope-related transcriptional attenuator  100 
 
 
472 aa  947    Thermobifida fusca YX  Bacteria  hitchhiker  0.00643877  n/a   
 
 
-
 
NC_007333  Tfu_1372  cell envelope-related transcriptional attenuator  52.6 
 
 
490 aa  476  1e-133  Thermobifida fusca YX  Bacteria  normal  n/a   
 
 
-
 
NC_014210  Ndas_1419  cell envelope-related transcriptional attenuator  49.5 
 
 
511 aa  450  1e-125  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  0.327426  normal 
 
 
-
 
NC_013595  Sros_9275  Transcriptional regulator-like protein  40.13 
 
 
457 aa  323  4e-87  Streptosporangium roseum DSM 43021  Bacteria  normal  normal 
 
 
-
 
NC_013510  Tcur_2629  cell envelope-related transcriptional attenuator  44 
 
 
496 aa  319  7e-86  Thermomonospora curvata DSM 43183  Bacteria  hitchhiker  0.00000175757  n/a   
 
 
-
 
NC_014165  Tbis_1877  cell envelope-related transcriptional attenuator  39.52 
 
 
539 aa  305  1.0000000000000001e-81  Thermobispora bispora DSM 43833  Bacteria  normal  normal  0.801543 
 
 
-
 
NC_013595  Sros_6456  Transcriptional regulator-like protein  40.14 
 
 
543 aa  297  2e-79  Streptosporangium roseum DSM 43021  Bacteria  normal  hitchhiker  0.00855962 
 
 
-
 
NC_014165  Tbis_2169  cell envelope-related transcriptional attenuator  42.15 
 
 
504 aa  293  4e-78  Thermobispora bispora DSM 43833  Bacteria  normal  0.188939  normal 
 
 
-
 
NC_013595  Sros_3414  Transcriptional regulator-like protein  35.81 
 
 
609 aa  265  1e-69  Streptosporangium roseum DSM 43021  Bacteria  normal  0.442542  normal  0.390313 
 
 
-
 
NC_008699  Noca_1398  cell envelope-related transcriptional attenuator  36.87 
 
 
481 aa  242  9e-63  Nocardioides sp. JS614  Bacteria  normal  n/a   
 
 
-
 
NC_013172  Bfae_09180  cell envelope-related function transcriptional attenuator common domain  36.28 
 
 
791 aa  214  3.9999999999999995e-54  Brachybacterium faecium DSM 4810  Bacteria  normal  n/a   
 
 
-
 
NC_013169  Ksed_26120  cell envelope-related function transcriptional attenuator common domain protein  33.41 
 
 
497 aa  201  1.9999999999999998e-50  Kytococcus sedentarius DSM 20547  Bacteria  normal  normal 
 
 
-
 
NC_013757  Gobs_4982  cell envelope-related transcriptional attenuator  38.73 
 
 
523 aa  196  9e-49  Geodermatophilus obscurus DSM 43160  Bacteria  normal  n/a   
 
 
-
 
NC_008541  Arth_1187  cell envelope-related transcriptional attenuator  30.87 
 
 
546 aa  193  7e-48  Arthrobacter sp. FB24  Bacteria  normal  0.208279  n/a   
 
 
-
 
NC_012803  Mlut_05220  cell envelope-related function transcriptional attenuator common domain protein  41.61 
 
 
537 aa  189  5.999999999999999e-47  Micrococcus luteus NCTC 2665  Bacteria  normal  0.855799  n/a   
 
 
-
 
NC_011886  Achl_1258  cell envelope-related transcriptional attenuator  30.73 
 
 
549 aa  187  4e-46  Arthrobacter chlorophenolicus A6  Bacteria  n/a    hitchhiker  0.0000000145407 
 
 
-
 
NC_008699  Noca_2614  cell envelope-related transcriptional attenuator  33.56 
 
 
508 aa  183  5.0000000000000004e-45  Nocardioides sp. JS614  Bacteria  normal  0.235431  n/a   
 
 
-
 
NC_013525  Tter_0570  cell envelope-related transcriptional attenuator  24.51 
 
 
377 aa  86.3  0.000000000000001  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_009972  Haur_1198  cell envelope-related transcriptional attenuator  27.59 
 
 
585 aa  84.3  0.000000000000004  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  n/a   
 
 
-
 
NC_013522  Taci_0893  cell envelope-related transcriptional attenuator  28.25 
 
 
453 aa  84.7  0.000000000000004  Thermanaerovibrio acidaminovorans DSM 6589  Bacteria  normal  0.301121  n/a   
 
 
-
 
NC_009664  Krad_0030  cell envelope-related transcriptional attenuator  28.57 
 
 
506 aa  81.3  0.00000000000003  Kineococcus radiotolerans SRS30216  Bacteria  normal  normal  0.0770441 
 
 
-
 
NC_014210  Ndas_0934  cell envelope-related transcriptional attenuator  27.04 
 
 
480 aa  81.3  0.00000000000004  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  normal  0.0202033 
 
 
-
 
NC_008346  Swol_1921  cell envelope-related transcriptional attenuator  27.16 
 
 
406 aa  80.9  0.00000000000005  Syntrophomonas wolfei subsp. wolfei str. Goettingen  Bacteria  normal  0.116318  n/a   
 
 
-
 
NC_013216  Dtox_4120  cell envelope-related transcriptional attenuator  26.91 
 
 
445 aa  79.3  0.0000000000001  Desulfotomaculum acetoxidans DSM 771  Bacteria  hitchhiker  0.0000955467  unclonable  0.000000000378568 
 
 
-
 
NC_009767  Rcas_1996  cell envelope-related transcriptional attenuator  28.09 
 
 
527 aa  79.3  0.0000000000001  Roseiflexus castenholzii DSM 13941  Bacteria  normal  normal  0.177975 
 
 
-
 
NC_013525  Tter_1433  cell envelope-related transcriptional attenuator  24.52 
 
 
332 aa  79.3  0.0000000000002  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_011830  Dhaf_4100  cell envelope-related transcriptional attenuator  31.4 
 
 
426 aa  78.2  0.0000000000003  Desulfitobacterium hafniense DCB-2  Bacteria  unclonable  0.000000000000199964  n/a   
 
 
-
 
NC_014210  Ndas_0935  cell envelope-related transcriptional attenuator  27.49 
 
 
465 aa  78.6  0.0000000000003  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  normal  0.0761113 
 
 
-
 
NC_013411  GYMC61_3385  membrane-bound transcriptional regulator LytR  23.95 
 
 
313 aa  77.8  0.0000000000004  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_009523  RoseRS_0131  cell envelope-related transcriptional attenuator  27.56 
 
 
353 aa  77.4  0.0000000000005  Roseiflexus sp. RS-1  Bacteria  normal  0.763008  normal 
 
 
-
 
NC_009767  Rcas_0369  cell envelope-related transcriptional attenuator  26.06 
 
 
356 aa  77  0.0000000000007  Roseiflexus castenholzii DSM 13941  Bacteria  normal  0.117824  normal  0.3088 
 
 
-
 
NC_009253  Dred_3112  cell envelope-related transcriptional attenuator  25.1 
 
 
419 aa  77  0.0000000000007  Desulfotomaculum reducens MI-1  Bacteria  normal  0.0132049  n/a   
 
 
-
 
NC_014151  Cfla_2383  cell envelope-related transcriptional attenuator  29.76 
 
 
389 aa  76.3  0.000000000001  Cellulomonas flavigena DSM 20109  Bacteria  normal  0.0868762  hitchhiker  0.00772059 
 
 
-
 
NC_011831  Cagg_1700  cell envelope-related transcriptional attenuator  27.9 
 
 
463 aa  75.9  0.000000000001  Chloroflexus aggregans DSM 9485  Bacteria  normal  0.55383  normal 
 
 
-
 
NC_009767  Rcas_0015  cell envelope-related transcriptional attenuator  30.83 
 
 
503 aa  76.3  0.000000000001  Roseiflexus castenholzii DSM 13941  Bacteria  normal  0.0348648  hitchhiker  0.0000779954 
 
 
-
 
NC_007604  Synpcc7942_1360  cell envelope-related transcriptional attenuator  25 
 
 
436 aa  75.5  0.000000000002  Synechococcus elongatus PCC 7942  Bacteria  normal  normal 
 
 
-
 
NC_013739  Cwoe_4615  cell envelope-related transcriptional attenuator  27.86 
 
 
510 aa  75.5  0.000000000002  Conexibacter woesei DSM 14684  Bacteria  normal  normal 
 
 
-
 
NC_011729  PCC7424_2873  cell envelope-related transcriptional attenuator  25.25 
 
 
475 aa  75.1  0.000000000003  Cyanothece sp. PCC 7424  Bacteria  n/a    normal 
 
 
-
 
NC_012669  Bcav_1167  cell envelope-related protein transcriptional attenuator  26.18 
 
 
417 aa  74.7  0.000000000004  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal 
 
 
-
 
NC_011899  Hore_13390  cell envelope-related transcriptional attenuator  25.96 
 
 
405 aa  74.3  0.000000000005  Halothermothrix orenii H 168  Bacteria  normal  0.557039  n/a   
 
 
-
 
NC_011831  Cagg_3186  cell envelope-related transcriptional attenuator  27.55 
 
 
451 aa  73.6  0.000000000007  Chloroflexus aggregans DSM 9485  Bacteria  normal  normal  0.689692 
 
 
-
 
NC_014165  Tbis_3514  cell envelope-related transcriptional attenuator  26.38 
 
 
468 aa  73.2  0.000000000009  Thermobispora bispora DSM 43833  Bacteria  normal  normal 
 
 
-
 
NC_014165  Tbis_0728  cell envelope-related transcriptional attenuator  26.9 
 
 
618 aa  73.2  0.00000000001  Thermobispora bispora DSM 43833  Bacteria  normal  normal  0.0188197 
 
 
-
 
NC_011830  Dhaf_3430  cell envelope-related transcriptional attenuator  30 
 
 
439 aa  73.2  0.00000000001  Desulfitobacterium hafniense DCB-2  Bacteria  normal  0.0225853  n/a   
 
 
-
 
NC_012793  GWCH70_3272  membrane-bound transcriptional regulator LytR  25.1 
 
 
310 aa  72.8  0.00000000001  Geobacillus sp. WCH70  Bacteria  hitchhiker  0.000512755  n/a   
 
 
-
 
NC_011661  Dtur_0400  cell envelope-related transcriptional attenuator  25 
 
 
308 aa  72  0.00000000002  Dictyoglomus turgidum DSM 6724  Bacteria  hitchhiker  0.000000257107  n/a   
 
 
-
 
NC_013159  Svir_37600  cell envelope-related function transcriptional attenuator common domain protein  30.3 
 
 
619 aa  72  0.00000000002  Saccharomonospora viridis DSM 43017  Bacteria  normal  0.760055  normal  0.249296 
 
 
-
 
NC_008312  Tery_2604  cell envelope-related transcriptional attenuator  23.4 
 
 
471 aa  72  0.00000000002  Trichodesmium erythraeum IMS101  Bacteria  normal  normal  0.22991 
 
 
-
 
NC_013739  Cwoe_0921  cell envelope-related transcriptional attenuator  28.15 
 
 
515 aa  71.6  0.00000000003  Conexibacter woesei DSM 14684  Bacteria  normal  0.455476  normal 
 
 
-
 
NC_011725  BCB4264_A5319  transcription antiterminator, LytR family  27.64 
 
 
374 aa  71.2  0.00000000003  Bacillus cereus B4264  Bacteria  normal  n/a   
 
 
-
 
NC_011772  BCG9842_B5640  transcription antiterminator, LytR family  27.64 
 
 
372 aa  71.2  0.00000000003  Bacillus cereus G9842  Bacteria  normal  hitchhiker  0.00000000000247251 
 
 
-
 
NC_003909  BCE_5306  LytR family transcription antiterminator  27.64 
 
 
377 aa  71.2  0.00000000004  Bacillus cereus ATCC 10987  Bacteria  normal  n/a   
 
 
-
 
NC_013385  Adeg_1973  cell envelope-related transcriptional attenuator  26.12 
 
 
418 aa  70.9  0.00000000004  Ammonifex degensii KC4  Bacteria  normal  0.554316  n/a   
 
 
-
 
NC_009674  Bcer98_0803  cell envelope-related transcriptional attenuator  23.63 
 
 
317 aa  71.2  0.00000000004  Bacillus cytotoxicus NVH 391-98  Bacteria  normal  n/a   
 
 
-
 
NC_008699  Noca_3302  cell envelope-related transcriptional attenuator  27.74 
 
 
406 aa  70.9  0.00000000004  Nocardioides sp. JS614  Bacteria  normal  0.0160587  n/a   
 
 
-
 
NC_004116  SAG0368  hypothetical protein  24.26 
 
 
435 aa  70.9  0.00000000005  Streptococcus agalactiae 2603V/R  Bacteria  normal  n/a   
 
 
-
 
NC_010718  Nther_2377  cell envelope-related transcriptional attenuator  28.89 
 
 
344 aa  70.5  0.00000000007  Natranaerobius thermophilus JW/NM-WN-LF  Bacteria  hitchhiker  0.00145979  normal 
 
 
-
 
NC_008532  STER_0378  transcriptional regulator  31.75 
 
 
408 aa  70.5  0.00000000007  Streptococcus thermophilus LMD-9  Bacteria  hitchhiker  0.0016641  n/a   
 
 
-
 
NC_005945  BAS5047  LytR family transcription antiterminator  27.02 
 
 
375 aa  70.1  0.00000000008  Bacillus anthracis str. Sterne  Bacteria  normal  n/a   
 
 
-
 
NC_005957  BT9727_4877  LytR family transcriptional regulator  27.13 
 
 
375 aa  70.1  0.00000000008  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  normal  n/a   
 
 
-
 
NC_006274  BCZK4892  LytR family transcriptional regulator  27.13 
 
 
375 aa  70.1  0.00000000008  Bacillus cereus E33L  Bacteria  normal  n/a   
 
 
-
 
NC_007530  GBAA_5432  LytR family transcription antiterminator  27.02 
 
 
375 aa  70.1  0.00000000008  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  n/a   
 
 
-
 
NC_013521  Sked_08580  cell envelope-related function transcriptional attenuator common domain protein  26.23 
 
 
396 aa  70.1  0.00000000008  Sanguibacter keddieii DSM 10542  Bacteria  normal  0.783991  normal  0.393457 
 
 
-
 
NC_013411  GYMC61_3243  cell envelope-related transcriptional attenuator  27.89 
 
 
335 aa  70.1  0.00000000009  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_008531  LEUM_0961  transcriptional regulator  20.93 
 
 
410 aa  69.7  0.00000000009  Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293  Bacteria  normal  n/a   
 
 
-
 
NC_014158  Tpau_0136  cell envelope-related transcriptional attenuator  29.39 
 
 
466 aa  69.3  0.0000000001  Tsukamurella paurometabola DSM 20162  Bacteria  normal  n/a   
 
 
-
 
NC_009674  Bcer98_0523  cell envelope-related transcriptional attenuator  24.02 
 
 
337 aa  69.7  0.0000000001  Bacillus cytotoxicus NVH 391-98  Bacteria  normal  n/a   
 
 
-
 
NC_013174  Jden_1864  cell envelope-related transcriptional attenuator  24.48 
 
 
391 aa  69.7  0.0000000001  Jonesia denitrificans DSM 20603  Bacteria  normal  0.383316  normal  0.036217 
 
 
-
 
NC_009674  Bcer98_3735  cell envelope-related transcriptional attenuator  27.93 
 
 
383 aa  69.7  0.0000000001  Bacillus cytotoxicus NVH 391-98  Bacteria  normal  n/a   
 
 
-
 
NC_013131  Caci_7619  cell envelope-related transcriptional attenuator  28.03 
 
 
379 aa  69.7  0.0000000001  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_010424  Daud_2095  cell envelope-related transcriptional attenuator  24.9 
 
 
411 aa  69.3  0.0000000001  Candidatus Desulforudis audaxviator MP104C  Bacteria  normal  n/a   
 
 
-
 
NC_011658  BCAH187_A5364  transcription antiterminator, LytR family  27.24 
 
 
377 aa  69.3  0.0000000001  Bacillus cereus AH187  Bacteria  normal  n/a   
 
 
-
 
NC_008261  CPF_2378  cell envelope-related function transcriptional attenuator  27.24 
 
 
437 aa  69.3  0.0000000001  Clostridium perfringens ATCC 13124  Bacteria  normal  0.0983623  n/a   
 
 
-
 
NC_008262  CPR_2090  transcription regulator LytR-like protein  27.24 
 
 
437 aa  69.7  0.0000000001  Clostridium perfringens SM101  Bacteria  normal  0.853394  n/a   
 
 
-
 
NC_008699  Noca_0784  cell envelope-related transcriptional attenuator  28.33 
 
 
400 aa  69.7  0.0000000001  Nocardioides sp. JS614  Bacteria  normal  n/a   
 
 
-
 
NC_010184  BcerKBAB4_0519  cell envelope-related transcriptional attenuator  23.44 
 
 
338 aa  69.3  0.0000000001  Bacillus weihenstephanensis KBAB4  Bacteria  normal  n/a   
 
 
-
 
NC_010184  BcerKBAB4_4992  cell envelope-related transcriptional attenuator  25.61 
 
 
374 aa  68.9  0.0000000002  Bacillus weihenstephanensis KBAB4  Bacteria  normal  n/a   
 
 
-
 
NC_008541  Arth_2228  cell envelope-related transcriptional attenuator  24.67 
 
 
521 aa  68.6  0.0000000002  Arthrobacter sp. FB24  Bacteria  hitchhiker  0.000756142  n/a   
 
 
-
 
NC_005945  BAS0572  LytR family transcription antiterminator  23.64 
 
 
337 aa  68.2  0.0000000003  Bacillus anthracis str. Sterne  Bacteria  normal  n/a   
 
 
-
 
NC_014248  Aazo_3223  cell envelope-like transcriptional attenuator  26.29 
 
 
471 aa  68.2  0.0000000003  'Nostoc azollae' 0708  Bacteria  normal  n/a   
 
 
-
 
NC_007530  GBAA_0605  LytR family transcription antiterminator  23.64 
 
 
333 aa  68.2  0.0000000003  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  n/a   
 
 
-
 
NC_007604  Synpcc7942_0961  cell envelope-related function transcriptional attenuator  30.11 
 
 
337 aa  68.2  0.0000000003  Synechococcus elongatus PCC 7942  Bacteria  normal  0.472241  normal 
 
 
-
 
NC_013595  Sros_9260  Transcriptional regulator-like protein  25.9 
 
 
481 aa  68.6  0.0000000003  Streptosporangium roseum DSM 43021  Bacteria  normal  normal  0.969868 
 
 
-
 
NC_009523  RoseRS_1714  cell envelope-related transcriptional attenuator  29.29 
 
 
528 aa  68.2  0.0000000003  Roseiflexus sp. RS-1  Bacteria  normal  normal  0.603952 
 
 
-
 
NC_011773  BCAH820_0661  transcription antiterminator, LytR family  23.64 
 
 
338 aa  68.2  0.0000000003  Bacillus cereus AH820  Bacteria  n/a    hitchhiker  1.34714e-25 
 
 
-
 
NC_011772  BCG9842_B3352  transcription antiterminator, LytR family  20.85 
 
 
335 aa  68.2  0.0000000003  Bacillus cereus G9842  Bacteria  hitchhiker  0.0000199263  hitchhiker  0.0000000000000086496 
 
 
-
 
NC_011773  BCAH820_5288  transcription antiterminator, LytR family  26.51 
 
 
375 aa  67.8  0.0000000004  Bacillus cereus AH820  Bacteria  n/a    hitchhiker  0.00000000327862 
 
 
-
 
NC_009513  Lreu_1057  cell envelope-related transcriptional attenuator  27.31 
 
 
333 aa  67.8  0.0000000004  Lactobacillus reuteri DSM 20016  Bacteria  normal  0.0371332  n/a   
 
 
-
 
NC_013510  Tcur_0624  cell envelope-related transcriptional attenuator  30.2 
 
 
481 aa  67.8  0.0000000004  Thermomonospora curvata DSM 43183  Bacteria  normal  n/a   
 
 
-
 
NC_010184  BcerKBAB4_1838  cell envelope-related transcriptional attenuator  20.85 
 
 
333 aa  67.8  0.0000000004  Bacillus weihenstephanensis KBAB4  Bacteria  hitchhiker  0.00343174  n/a   
 
 
-
 
NC_011725  BCB4264_A0643  transcription antiterminator, LytR family  22.44 
 
 
338 aa  67.8  0.0000000005  Bacillus cereus B4264  Bacteria  normal  0.849345  n/a   
 
 
-
 
NC_006274  BCZK0516  LytR family transcriptional regulator  23.44 
 
 
337 aa  67.4  0.0000000005  Bacillus cereus E33L  Bacteria  normal  n/a   
 
 
-
 
NC_011772  BCG9842_B4695  transcription antiterminator, LytR family  22.44 
 
 
338 aa  67.4  0.0000000005  Bacillus cereus G9842  Bacteria  normal  0.541641  hitchhiker  0.0000000308245 
 
 
-
 
NC_008726  Mvan_1726  cell envelope-related transcriptional attenuator  27.31 
 
 
493 aa  67.4  0.0000000005  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  normal 
 
 
-
 
NC_012793  GWCH70_3046  cell envelope-related transcriptional attenuator  22.31 
 
 
322 aa  67.4  0.0000000006  Geobacillus sp. WCH70  Bacteria  normal  0.634845  n/a   
 
 
-
 
NC_008312  Tery_1857  cell envelope-related transcriptional attenuator  24.47 
 
 
456 aa  67  0.0000000007  Trichodesmium erythraeum IMS101  Bacteria  normal  0.046941  normal 
 
 
-
 
NC_007413  Ava_0411  cell envelope-like transcriptional attenuator  28.85 
 
 
472 aa  67  0.0000000008  Anabaena variabilis ATCC 29413  Bacteria  normal  normal  0.207765 
 
 
-
 
NC_011725  BCB4264_A1975  transcription antiterminator, LytR family  21.94 
 
 
333 aa  66.6  0.0000000008  Bacillus cereus B4264  Bacteria  normal  0.258453  n/a   
 
 
-
 
NC_011658  BCAH187_A0732  transcription antiterminator, LytR family  23.58 
 
 
338 aa  67  0.0000000008  Bacillus cereus AH187  Bacteria  normal  n/a   
 
 
-
 
NC_009767  Rcas_0287  cell envelope-related transcriptional attenuator  29.58 
 
 
412 aa  66.6  0.0000000009  Roseiflexus castenholzii DSM 13941  Bacteria  normal  normal 
 
 
-
 
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