46 homologs were found in PanDaTox collection
for query gene Tbd_2092 on replicon NC_007404
Organism: Thiobacillus denitrificans ATCC 25259



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Replicon accession
Locus tag
Product
% identity
Alignment on query gene
Alignment on homolog gene
Length
Bit score

E-value
Organism name
Kingdom
Plasmid clonability
Plasmid unclonability p-value
Fosmid clonability
Fosmid unclonability p-value
Coverage Plot
PanDaTox homologs
Experimental validation
NC_007404  Tbd_2092  putative positive regulator of sigma E activity  100 
 
 		 144 aa  283  8e-76  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  1  normal  1 
 
 
-
 
NC_002977  MCA1468  sigma factor regulator MucC  37.76 
 
 		 146 aa  73.9  0.0000000000006  Methylococcus capsulatus str. Bath  Bacteria  normal  1  n/a   
 
 
-
 
NC_009708  YpsIP31758_1132  SoxR reducing system protein RseC  36.29 
 
 		 151 aa  64.3  0.0000000005  Yersinia pseudotuberculosis IP 31758  Bacteria  normal  0.0219505  n/a   
 
 
-
 
NC_008740  Maqu_2260  positive regulator of sigma E, RseC/MucC  29.17 
 
 		 149 aa  64.3  0.0000000005  Marinobacter aquaeolei VT8  Bacteria  normal  0.32117  n/a   
 
 
-
 
NC_010159  YpAngola_A3607  SoxR reducing system protein RseC  36.29 
 
 		 151 aa  64.3  0.0000000005  Yersinia pestis Angola  Bacteria  hitchhiker  0.00898672  normal  1 
 
 
-
 
NC_010465  YPK_1185  SoxR reducing system protein RseC  36.29 
 
 		 151 aa  64.3  0.0000000005  Yersinia pseudotuberculosis YPIII  Bacteria  normal  0.101352  n/a   
 
 
-
 
NC_009832  Spro_3673  SoxR reducing system protein RseC  40.17 
 
 		 157 aa  63.2  0.000000001  Serratia proteamaculans 568  Bacteria  normal  0.290268  normal  0.795656 
 
 
-
 
NC_007298  Daro_2023  positive regulator of sigma(E), RseC/MucC  33.61 
 
 		 147 aa  62.4  0.000000002  Dechloromonas aromatica RCB  Bacteria  hitchhiker  0.00574884  normal  1 
 
 
-
 
NC_010498  EcSMS35_2723  SoxR reducing system protein RseC  32.14 
 
 		 159 aa  55.1  0.0000003  Escherichia coli SMS-3-5  Bacteria  normal  0.149775  normal  1 
 
 
-
 
NC_009801  EcE24377A_2856  SoxR reducing system protein RseC  32.86 
 
 		 159 aa  55.1  0.0000003  Escherichia coli E24377A  Bacteria  normal  0.0186933  n/a   
 
 
-
 
NC_010658  SbBS512_E2935  SoxR reducing system protein RseC  32.86 
 
 		 159 aa  55.1  0.0000003  Shigella boydii CDC 3083-94  Bacteria  normal  0.151183  n/a   
 
 
-
 
NC_011353  ECH74115_3807  SoxR reducing system protein RseC  32.86 
 
 		 159 aa  55.1  0.0000003  Escherichia coli O157:H7 str. EC4115  Bacteria  normal  0.0524065  normal  1 
 
 
-
 
NC_012892  B21_02428  hypothetical protein  32.86 
 
 		 159 aa  55.1  0.0000003  Escherichia coli BL21  Bacteria  normal  1  n/a   
 
 
-
 
CP001509  ECD_02464  RseC protein involved in reduction of the SoxR iron-sulfur cluster  32.86 
 
 		 159 aa  55.1  0.0000003  Escherichia coli BL21(DE3)  Bacteria  normal  1  n/a   
 
 
-
 
NC_010468  EcolC_1107  SoxR reducing system protein RseC  32.14 
 
 		 159 aa  54.7  0.0000004  Escherichia coli ATCC 8739  Bacteria  normal  0.288168  normal  1 
 
 
-
 
CP001637  EcDH1_1098  positive regulator of sigma E, RseC/MucC  32.14 
 
 		 159 aa  54.7  0.0000004  Escherichia coli DH1  Bacteria  decreased coverage  0.00219404  n/a   
 
 
-
 
NC_011901  Tgr7_1086  positive regulator of sigma E, RseC/MucC  30.77 
 
 		 157 aa  54.7  0.0000004  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  0.284991  n/a   
 
 
-
 
NC_009800  EcHS_A2725  SoxR reducing system protein RseC  32.14 
 
 		 159 aa  54.7  0.0000004  Escherichia coli HS  Bacteria  normal  0.334856  n/a   
 
 
-
 
NC_008340  Mlg_1342  positive regulator of sigma E, RseC/MucC  33.33 
 
 		 147 aa  51.6  0.000004  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  0.0666262  normal  0.770202 
 
 
-
 
NC_007954  Sden_2769  positive regulator of sigma(E), RseC/MucC  34.65 
 
 		 177 aa  50.8  0.000006  Shewanella denitrificans OS217  Bacteria  hitchhiker  0.00000517336  n/a   
 
 
-
 
NC_009438  Sputcn32_1156  positive regulator of sigma E, RseC/MucC  32 
 
 		 157 aa  50.4  0.000009  Shewanella putrefaciens CN-32  Bacteria  normal  0.0373343  n/a   
 
 
-
 
NC_012917  PC1_3074  SoxR reducing system protein RseC  30.15 
 
 		 150 aa  48.1  0.00004  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  hitchhiker  0.0025103  n/a   
 
 
-
 
NC_013421  Pecwa_1201  SoxR reducing system protein RseC  32.12 
 
 		 150 aa  48.1  0.00004  Pectobacterium wasabiae WPP163  Bacteria  hitchhiker  0.0000162902  n/a   
 
 
-
 
NC_009656  PSPA7_4754  positive regulator for alginate biosynthesis MucC  36.36 
 
 		 151 aa  47.8  0.00005  Pseudomonas aeruginosa PA7  Bacteria  normal  1  n/a   
 
 
-
 
NC_009052  Sbal_1198  positive regulator of sigma E, RseC/MucC  30 
 
 		 157 aa  47.4  0.00007  Shewanella baltica OS155  Bacteria  decreased coverage  0.0000634638  n/a   
 
 
-
 
NC_007912  Sde_2248  positive regulator for alginate biosynthesis MucC  26.32 
 
 		 156 aa  47  0.00009  Saccharophagus degradans 2-40  Bacteria  hitchhiker  0.00000124681  normal  0.0231164 
 
 
-
 
NC_008463  PA14_54400  positive regulator for alginate biosynthesis MucC  34.34 
 
 		 151 aa  46.6  0.0001  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  0.675062  normal  1 
 
 
-
 
NC_011662  Tmz1t_2318  positive regulator of sigma E, RseC/MucC  34.13 
 
 		 155 aa  45.4  0.0002  Thauera sp. MZ1T  Bacteria  normal  1  n/a   
 
 
-
 
NC_009997  Sbal195_1275  positive regulator of sigma E, RseC/MucC  29 
 
 		 157 aa  45.4  0.0003  Shewanella baltica OS195  Bacteria  normal  0.0820222  normal  1 
 
 
-
 
NC_009665  Shew185_1242  positive regulator of sigma E, RseC/MucC  29 
 
 		 157 aa  45.4  0.0003  Shewanella baltica OS185  Bacteria  hitchhiker  0.000737615  n/a   
 
 
-
 
NC_011663  Sbal223_3115  positive regulator of sigma E, RseC/MucC  29 
 
 		 157 aa  45.4  0.0003  Shewanella baltica OS223  Bacteria  normal  0.0121324  normal  0.0261972 
 
 
-
 
NC_009654  Mmwyl1_1101  positive regulator of sigma E, RseC/MucC  25.9 
 
 		 155 aa  45.4  0.0003  Marinomonas sp. MWYL1  Bacteria  normal  1  normal  0.138854 
 
 
-
 
NC_011083  SeHA_C2851  SoxR reducing system protein RseC  32.79 
 
 		 159 aa  45.1  0.0003  Salmonella enterica subsp. enterica serovar Heidelberg str. SL476  Bacteria  normal  1  normal  0.74612 
 
 
-
 
NC_011094  SeSA_A2829  SoxR reducing system protein RseC  32.79 
 
 		 159 aa  45.1  0.0003  Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633  Bacteria  normal  1  normal  1 
 
 
-
 
NC_011149  SeAg_B2747  SoxR reducing system protein RseC  32.79 
 
 		 159 aa  45.1  0.0003  Salmonella enterica subsp. enterica serovar Agona str. SL483  Bacteria  normal  0.0281103  n/a   
 
 
-
 
NC_011205  SeD_A2963  SoxR reducing system protein RseC  32.79 
 
 		 159 aa  45.1  0.0003  Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853  Bacteria  normal  0.901953  normal  1 
 
 
-
 
NC_013422  Hneap_0704  positive regulator of sigma E, RseC/MucC  30.39 
 
 		 183 aa  44.3  0.0005  Halothiobacillus neapolitanus c2  Bacteria  normal  1  n/a   
 
 
-
 
NC_011080  SNSL254_A2847  SoxR reducing system protein RseC  31.97 
 
 		 159 aa  44.7  0.0005  Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  normal  1  normal  0.156123 
 
 
-
 
NC_004347  SO_1345  sigma-E factor regulatory protein RseC  28.57 
 
 		 157 aa  43.9  0.0007  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_013889  TK90_1953  positive regulator of sigma E, RseC/MucC  35.88 
 
 		 151 aa  43.5  0.0008  Thioalkalivibrio sp. K90mix  Bacteria  normal  0.13883  normal  1 
 
 
-
 
NC_007298  Daro_1491  positive regulator of sigma(E), RseC/MucC  25.71 
 
 		 180 aa  43.5  0.0009  Dechloromonas aromatica RCB  Bacteria  normal  1  normal  0.392689 
 
 
-
 
NC_007484  Noc_2463  positive regulator of sigma(E), RseC/MucC  29.27 
 
 		 146 aa  42.4  0.002  Nitrosococcus oceani ATCC 19707  Bacteria  normal  0.939617  n/a   
 
 
-
 
NC_007520  Tcr_0730  positive regulator of sigma(E), RseC/MucC  28.12 
 
 		 167 aa  42.4  0.002  Thiomicrospira crunogena XCL-2  Bacteria  decreased coverage  0.0000000000000950135  n/a   
 
 
-
 
NC_009831  Ssed_1145  positive regulator of sigma E, RseC/MucC  22.95 
 
 		 151 aa  42.4  0.002  Shewanella sediminis HAW-EB3  Bacteria  hitchhiker  0.000000688126  normal  1 
 
 
-
 
NC_008345  Sfri_2932  positive regulator of sigma E, RseC/MucC  25 
 
 		 168 aa  41.2  0.005  Shewanella frigidimarina NCIMB 400  Bacteria  hitchhiker  0.00401591  n/a   
 
 
-
 
NC_008541  Arth_3471  ATPase, P-type (transporting), HAD superfamily, subfamily IC  37.18 
 
 		 805 aa  40  0.01  Arthrobacter sp. FB24  Bacteria  normal  1  n/a   
 
 
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