21 homologs were found in PanDaTox collection
for query gene Tbd_2004 on replicon NC_007404
Organism: Thiobacillus denitrificans ATCC 25259



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_007404  Tbd_2004  transcriptional regulator  100 
 
 
68 aa  135  1e-31  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  normal 
 
 
-
 
NC_007404  Tbd_2070  transcriptional regulator  59.02 
 
 
74 aa  78.6  0.00000000000003  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  normal 
 
 
-
 
NC_003295  RSc2487  hypothetical protein  44.26 
 
 
68 aa  59.7  0.00000001  Ralstonia solanacearum GMI1000  Bacteria  normal  normal 
 
 
-
 
NC_008782  Ajs_0929  phage transcriptional regulator, AlpA  43.08 
 
 
78 aa  58.5  0.00000003  Acidovorax sp. JS42  Bacteria  normal  hitchhiker  0.0000788728 
 
 
-
 
NC_007614  Nmul_A0062  putative transcriptional regulator  43.28 
 
 
84 aa  55.5  0.0000003  Nitrosospira multiformis ATCC 25196  Bacteria  normal  n/a   
 
 
-
 
NC_007949  Bpro_5085  putative transcriptional regulator  44.07 
 
 
89 aa  53.9  0.0000007  Polaromonas sp. JS666  Bacteria  decreased coverage  0.0000000380445  normal 
 
 
-
 
NC_011883  Ddes_1227  phage transcriptional regulator, AlpA  39.66 
 
 
78 aa  51.6  0.000004  Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774  Bacteria  normal  0.0127458  n/a   
 
 
-
 
NC_007951  Bxe_A3655  hypothetical protein  35.38 
 
 
80 aa  49.3  0.00002  Burkholderia xenovorans LB400  Bacteria  normal  normal 
 
 
-
 
NC_010625  Bphy_5752  hypothetical protein  36.51 
 
 
79 aa  46.2  0.0001  Burkholderia phymatum STM815  Bacteria  normal  normal 
 
 
-
 
NC_008340  Mlg_0638  phage transcriptional regulator, AlpA  37.04 
 
 
66 aa  45.1  0.0003  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  normal  0.0720576 
 
 
-
 
NC_010465  YPK_4164  phage transcriptional regulator, AlpA  38.89 
 
 
111 aa  44.7  0.0004  Yersinia pseudotuberculosis YPIII  Bacteria  normal  n/a   
 
 
-
 
NC_010658  SbBS512_E4074  prophage CP4-57 transcriptional regulator protein, AlpA family  38.1 
 
 
67 aa  43.9  0.0007  Shigella boydii CDC 3083-94  Bacteria  normal  n/a   
 
 
-
 
NC_008782  Ajs_1562  phage transcriptional regulator, AlpA  38.46 
 
 
79 aa  43.5  0.001  Acidovorax sp. JS42  Bacteria  normal  0.544133  normal  0.10217 
 
 
-
 
NC_010814  Glov_3119  phage transcriptional regulator, AlpA  38.89 
 
 
58 aa  42.7  0.001  Geobacter lovleyi SZ  Bacteria  hitchhiker  0.0000632591  n/a   
 
 
-
 
NC_012912  Dd1591_3999  phage transcriptional regulator, AlpA  37.1 
 
 
73 aa  41.6  0.003  Dickeya zeae Ech1591  Bacteria  normal  n/a   
 
 
-
 
NC_012918  GM21_2339  phage transcriptional regulator, AlpA  38 
 
 
73 aa  41.6  0.003  Geobacter sp. M21  Bacteria  n/a    normal 
 
 
-
 
NC_008043  TM1040_3544  putative transcriptional regulator  36.17 
 
 
134 aa  41.6  0.004  Ruegeria sp. TM1040  Bacteria  normal  normal  0.473162 
 
 
-
 
NC_009708  YpsIP31758_0052  AlpA family protein  38.98 
 
 
72 aa  41.2  0.004  Yersinia pseudotuberculosis IP 31758  Bacteria  normal  n/a   
 
 
-
 
NC_008781  Pnap_2647  phage transcriptional regulator, AlpA  37.14 
 
 
99 aa  40.8  0.007  Polaromonas naphthalenivorans CJ2  Bacteria  normal  0.561407  normal 
 
 
-
 
NC_014148  Plim_2648  Prophage CP4-57 regulatory  45.24 
 
 
93 aa  40  0.01  Planctomyces limnophilus DSM 3776  Bacteria  normal  0.395704  n/a   
 
 
-
 
NC_007298  Daro_2566  prophage CP4-57 regulatory  33.33 
 
 
91 aa  40  0.01  Dechloromonas aromatica RCB  Bacteria  normal  normal  0.37333 
 
 
-
 
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