13 homologs were found in PanDaTox collection
for query gene TM1040_3842 on replicon NC_008042
Organism: Ruegeria sp. TM1040



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Replicon accession
Locus tag
Product
% identity
Alignment on query gene
Alignment on homolog gene
Length
Bit score

E-value
Organism name
Kingdom
Plasmid clonability
Plasmid unclonability p-value
Fosmid clonability
Fosmid unclonability p-value
Coverage Plot
PanDaTox homologs
Experimental validation
NC_008042  TM1040_3842  XRE family transcriptional regulator  100 
 
 		 100 aa  207  5e-53  Ruegeria sp. TM1040  Bacteria  normal  1  normal  0.039108 
 
 
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NC_010510  Mrad2831_5908  XRE family transcriptional regulator  56.18 
 
 		 108 aa  111  3e-24  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.209414  hitchhiker  0.00928486 
 
 
-
 
NC_010172  Mext_1160  helix-turn-helix domain-containing protein  55.1 
 
 		 98 aa  110  4.0000000000000004e-24  Methylobacterium extorquens PA1  Bacteria  normal  1  normal  0.476577 
 
 
-
 
NC_010725  Mpop_0269  transcriptional regulator, XRE family  54.08 
 
 		 98 aa  111  4.0000000000000004e-24  Methylobacterium populi BJ001  Bacteria  normal  0.75294  normal  1 
 
 
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NC_011757  Mchl_1320  transcriptional regulator, XRE family  55.1 
 
 		 98 aa  110  4.0000000000000004e-24  Methylobacterium chloromethanicum CM4  Bacteria  normal  1  normal  1 
 
 
-
 
NC_007641  Rru_B0041  XRE family transcriptional regulator  56.79 
 
 		 103 aa  108  3e-23  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  0.0601255  n/a   
 
 
-
 
NC_011887  Mnod_8001  transcriptional regulator, XRE family  56.82 
 
 		 118 aa  107  7.000000000000001e-23  Methylobacterium nodulans ORS 2060  Bacteria  normal  1  n/a   
 
 
-
 
NC_010511  M446_1273  XRE family transcriptional regulator  53.41 
 
 		 103 aa  104  4e-22  Methylobacterium sp. 4-46  Bacteria  normal  0.31863  normal  0.4589 
 
 
-
 
NC_012791  Vapar_2697  transcriptional regulator, XRE family  37.5 
 
 		 126 aa  67.8  0.00000000005  Variovorax paradoxus S110  Bacteria  normal  1  n/a   
 
 
-
 
NC_011830  Dhaf_0650  transcriptional regulator, XRE family  45.65 
 
 		 110 aa  43.9  0.0008  Desulfitobacterium hafniense DCB-2  Bacteria  normal  1  n/a   
 
 
-
 
NC_009441  Fjoh_1649  XRE family transcriptional regulator  29.41 
 
 		 80 aa  43.5  0.001  Flavobacterium johnsoniae UW101  Bacteria  normal  1  n/a   
 
 
-
 
NC_013165  Shel_06770  predicted transcriptional regulator  39.19 
 
 		 106 aa  42.7  0.002  Slackia heliotrinireducens DSM 20476  Bacteria  normal  1  normal  1 
 
 
-
 
NC_013173  Dbac_2140  transcriptional regulator, XRE family  36.67 
 
 		 120 aa  40.4  0.009  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  1  n/a   
 
 
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