More than 300 homologs were found in PanDaTox collection
for query gene TM1040_3512 on replicon NC_008043
Organism: Ruegeria sp. TM1040



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_008043  TM1040_3512  succinyl-CoA synthetase (ADP-forming) alpha subunit  100 
 
 
295 aa  592  1e-168  Ruegeria sp. TM1040  Bacteria  normal  normal 
 
 
-
 
NC_009952  Dshi_2882  succinyl-CoA ligase [ADP-forming] subunit alpha  90.75 
 
 
293 aa  541  1e-153  Dinoroseobacter shibae DFL 12  Bacteria  normal  normal 
 
 
-
 
NC_007802  Jann_0827  succinyl-CoA synthetase (ADP-forming) alpha subunit  89.73 
 
 
293 aa  539  9.999999999999999e-153  Jannaschia sp. CCS1  Bacteria  normal  normal  0.623831 
 
 
-
 
NC_007493  RSP_0966  succinyl-CoA synthetase (ADP-forming) alpha subunit  89.38 
 
 
294 aa  530  1e-149  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  n/a   
 
 
-
 
NC_009428  Rsph17025_0078  succinyl-CoA synthetase, alpha subunit  89.38 
 
 
294 aa  527  1e-149  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  0.815822  normal  0.735177 
 
 
-
 
NC_009049  Rsph17029_2626  succinyl-CoA synthetase, alpha subunit  89.38 
 
 
294 aa  530  1e-149  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  0.639809  normal 
 
 
-
 
NC_008686  Pden_0558  succinyl-CoA synthetase, alpha subunit  85.96 
 
 
294 aa  479  1e-134  Paracoccus denitrificans PD1222  Bacteria  normal  normal  0.307305 
 
 
-
 
NC_007794  Saro_1181  succinyl-CoA synthetase (ADP-forming) alpha subunit  76.71 
 
 
296 aa  463  1e-129  Novosphingobium aromaticivorans DSM 12444  Bacteria  normal  0.115705  n/a   
 
 
-
 
NC_008048  Sala_2229  succinyl-CoA synthetase, alpha subunit  76.03 
 
 
296 aa  461  1e-129  Sphingopyxis alaskensis RB2256  Bacteria  normal  normal 
 
 
-
 
NC_010338  Caul_0230  succinyl-CoA synthetase, alpha subunit  74.66 
 
 
294 aa  455  1e-127  Caulobacter sp. K31  Bacteria  normal  normal  0.340698 
 
 
-
 
NC_009511  Swit_1299  succinyl-CoA synthetase (ADP-forming) alpha subunit  75 
 
 
294 aa  454  1e-127  Sphingomonas wittichii RW1  Bacteria  normal  0.825438  normal 
 
 
-
 
NC_009719  Plav_1453  succinyl-CoA synthetase subunit alpha  75 
 
 
291 aa  445  1.0000000000000001e-124  Parvibaculum lavamentivorans DS-1  Bacteria  normal  0.33077  normal 
 
 
-
 
NC_009720  Xaut_0491  succinyl-CoA synthetase, alpha subunit  76.39 
 
 
294 aa  444  1.0000000000000001e-124  Xanthobacter autotrophicus Py2  Bacteria  normal  normal 
 
 
-
 
NC_009720  Xaut_0155  succinyl-CoA synthetase, alpha subunit  76.39 
 
 
294 aa  444  1.0000000000000001e-124  Xanthobacter autotrophicus Py2  Bacteria  normal  0.941694  normal 
 
 
-
 
NC_010511  M446_2163  succinyl-CoA synthetase, alpha subunit  73.26 
 
 
294 aa  437  1e-121  Methylobacterium sp. 4-46  Bacteria  normal  0.612608  normal  0.179612 
 
 
-
 
NC_009484  Acry_1624  succinyl-CoA synthetase, alpha subunit  73.29 
 
 
291 aa  437  1e-121  Acidiphilium cryptum JF-5  Bacteria  normal  0.392007  n/a   
 
 
-
 
NC_011894  Mnod_1125  succinyl-CoA synthetase, alpha subunit  72.92 
 
 
294 aa  434  1e-121  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.0337157  n/a   
 
 
-
 
NC_010725  Mpop_1585  succinyl-CoA synthetase, alpha subunit  73.26 
 
 
294 aa  433  1e-120  Methylobacterium populi BJ001  Bacteria  normal  normal 
 
 
-
 
NC_010172  Mext_1645  succinyl-CoA synthetase, alpha subunit  73.26 
 
 
295 aa  432  1e-120  Methylobacterium extorquens PA1  Bacteria  normal  0.277929  normal  0.44525 
 
 
-
 
NC_010505  Mrad2831_0921  succinyl-CoA synthetase, alpha subunit  72.22 
 
 
294 aa  431  1e-120  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal  0.324584 
 
 
-
 
NC_011757  Mchl_1927  succinyl-CoA synthetase, alpha subunit  73.26 
 
 
295 aa  433  1e-120  Methylobacterium chloromethanicum CM4  Bacteria  normal  0.0416872  normal 
 
 
-
 
NC_011004  Rpal_0185  succinyl-CoA synthetase, alpha subunit  71.58 
 
 
294 aa  427  1e-119  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_007958  RPD_0539  succinyl-CoA synthetase, alpha subunit  71.58 
 
 
294 aa  427  1e-119  Rhodopseudomonas palustris BisB5  Bacteria  normal  normal 
 
 
-
 
NC_007643  Rru_A1212  succinyl-CoA synthetase subunit alpha  74.32 
 
 
292 aa  424  1e-118  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  n/a   
 
 
-
 
NC_007778  RPB_0279  succinyl-CoA synthetase, alpha subunit  71.09 
 
 
294 aa  427  1e-118  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal  0.0600383 
 
 
-
 
NC_007964  Nham_0543  succinyl-CoA synthetase, alpha subunit  70.83 
 
 
294 aa  424  1e-118  Nitrobacter hamburgensis X14  Bacteria  normal  n/a   
 
 
-
 
NC_009485  BBta_0394  succinyl-CoA synthetase (ADP-forming) alpha subunit  72.22 
 
 
294 aa  426  1e-118  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.937536  normal  0.205798 
 
 
-
 
NC_007406  Nwi_0421  succinyl-CoA ligase, alpha subunit  70.83 
 
 
294 aa  421  1e-117  Nitrobacter winogradskyi Nb-255  Bacteria  normal  normal 
 
 
-
 
NC_007925  RPC_0192  succinyl-CoA synthetase, alpha subunit  70.75 
 
 
294 aa  419  1e-116  Rhodopseudomonas palustris BisB18  Bacteria  normal  normal 
 
 
-
 
NC_007947  Mfla_1888  succinyl-CoA synthetase (ADP-forming) alpha subunit  70.55 
 
 
292 aa  419  1e-116  Methylobacillus flagellatus KT  Bacteria  normal  normal 
 
 
-
 
NC_010581  Bind_3606  succinyl-CoA synthetase, alpha subunit  68.49 
 
 
294 aa  419  1e-116  Beijerinckia indica subsp. indica ATCC 9039  Bacteria  normal  normal  0.0496602 
 
 
-
 
NC_008783  BARBAKC583_0024  succinyl-CoA synthetase subunit alpha  70.41 
 
 
300 aa  416  9.999999999999999e-116  Bartonella bacilliformis KC583  Bacteria  normal  n/a   
 
 
-
 
NC_007798  NSE_0250  succinyl-CoA synthetase, alpha subunit  67.92 
 
 
290 aa  413  1e-114  Neorickettsia sennetsu str. Miyayama  Bacteria  normal  n/a   
 
 
-
 
NC_002978  WD1209  succinyl-CoA synthetase, alpha subunit  66.32 
 
 
291 aa  408  1e-113  Wolbachia endosymbiont of Drosophila melanogaster  Bacteria  normal  n/a   
 
 
-
 
NC_013889  TK90_2039  succinyl-CoA synthetase, alpha subunit  65.41 
 
 
291 aa  404  1.0000000000000001e-112  Thioalkalivibrio sp. K90mix  Bacteria  normal  normal 
 
 
-
 
NC_010623  Bphy_4692  succinyl-CoA synthetase, alpha subunit  70.5 
 
 
278 aa  404  1e-111  Burkholderia phymatum STM815  Bacteria  normal  0.243539  normal  0.0624727 
 
 
-
 
NC_012912  Dd1591_2911  succinyl-CoA synthetase subunit alpha  67.35 
 
 
290 aa  400  9.999999999999999e-111  Dickeya zeae Ech1591  Bacteria  normal  0.861372  n/a   
 
 
-
 
NC_009708  YpsIP31758_2878  succinyl-CoA synthetase subunit alpha  68.15 
 
 
290 aa  399  9.999999999999999e-111  Yersinia pseudotuberculosis IP 31758  Bacteria  normal  n/a   
 
 
-
 
NC_010159  YpAngola_A1387  succinyl-CoA synthetase subunit alpha  68.15 
 
 
290 aa  399  9.999999999999999e-111  Yersinia pestis Angola  Bacteria  normal  0.341558  normal 
 
 
-
 
NC_012850  Rleg_3971  succinyl-CoA synthetase subunit alpha  67.69 
 
 
300 aa  400  9.999999999999999e-111  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.373268  normal 
 
 
-
 
NC_007974  Rmet_4358  succinyl-CoA synthetase, subunit alpha  71.92 
 
 
290 aa  399  9.999999999999999e-111  Cupriavidus metallidurans CH34  Bacteria  normal  normal  0.122556 
 
 
-
 
NC_010465  YPK_2965  succinyl-CoA synthetase subunit alpha  68.15 
 
 
290 aa  399  9.999999999999999e-111  Yersinia pseudotuberculosis YPIII  Bacteria  normal  n/a   
 
 
-
 
NC_008340  Mlg_2548  succinyl-CoA synthetase (ADP-forming) alpha subunit  66.9 
 
 
290 aa  398  9.999999999999999e-111  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  normal  0.12229 
 
 
-
 
NC_009727  CBUD_0598  succinyl-CoA synthetase alpha chain  66.1 
 
 
294 aa  397  9.999999999999999e-111  Coxiella burnetii Dugway 5J108-111  Bacteria  normal  n/a   
 
 
-
 
NC_011901  Tgr7_0810  succinyl-CoA synthetase, alpha subunit  66.1 
 
 
288 aa  398  9.999999999999999e-111  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  0.674167  n/a   
 
 
-
 
NC_012880  Dd703_1147  succinyl-CoA synthetase subunit alpha  67.12 
 
 
290 aa  396  1e-109  Dickeya dadantii Ech703  Bacteria  normal  n/a   
 
 
-
 
NC_009901  Spea_1791  succinyl-CoA synthetase, alpha subunit  68.51 
 
 
290 aa  396  1e-109  Shewanella pealeana ATCC 700345  Bacteria  normal  0.66969  n/a   
 
 
-
 
NC_010117  COXBURSA331_A1556  succinate-CoA ligase (ADP-forming), alpha subunit  65.75 
 
 
294 aa  395  1e-109  Coxiella burnetii RSA 331  Bacteria  normal  n/a   
 
 
-
 
NC_011666  Msil_2503  succinyl-CoA synthetase, alpha subunit  69.86 
 
 
294 aa  397  1e-109  Methylocella silvestris BL2  Bacteria  n/a    normal  0.90761 
 
 
-
 
NC_011369  Rleg2_3682  succinyl-CoA synthetase subunit alpha  66.67 
 
 
300 aa  394  1e-109  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal 
 
 
-
 
NC_013205  Aaci_1376  succinyl-CoA synthetase, alpha subunit  65.75 
 
 
299 aa  395  1e-109  Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria  normal  n/a   
 
 
-
 
NC_013421  Pecwa_3097  succinyl-CoA synthetase subunit alpha  67.82 
 
 
290 aa  395  1e-109  Pectobacterium wasabiae WPP163  Bacteria  normal  n/a   
 
 
-
 
NC_008576  Mmc1_1748  succinyl-CoA synthetase (ADP-forming) alpha subunit  70.89 
 
 
290 aa  395  1e-109  Magnetococcus sp. MC-1  Bacteria  normal  normal  0.13514 
 
 
-
 
NC_012917  PC1_1239  succinyl-CoA synthetase subunit alpha  67.01 
 
 
290 aa  396  1e-109  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  0.961959  n/a   
 
 
-
 
NC_009783  VIBHAR_01358  succinyl-CoA synthetase subunit alpha  66.9 
 
 
290 aa  394  1e-108  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
CP001509  ECD_00688  succinyl-CoA synthetase subunit alpha  67.12 
 
 
289 aa  394  1e-108  Escherichia coli BL21(DE3)  Bacteria  normal  n/a   
 
 
-
 
CP001637  EcDH1_2907  succinyl-CoA synthetase, alpha subunit  67.12 
 
 
289 aa  394  1e-108  Escherichia coli DH1  Bacteria  normal  0.398696  n/a   
 
 
-
 
NC_010498  EcSMS35_0741  succinyl-CoA synthetase subunit alpha  67.12 
 
 
289 aa  394  1e-108  Escherichia coli SMS-3-5  Bacteria  normal  normal 
 
 
-
 
NC_009801  EcE24377A_0755  succinyl-CoA synthetase subunit alpha  67.12 
 
 
289 aa  394  1e-108  Escherichia coli E24377A  Bacteria  normal  n/a   
 
 
-
 
NC_010468  EcolC_2927  succinyl-CoA synthetase subunit alpha  67.12 
 
 
289 aa  394  1e-108  Escherichia coli ATCC 8739  Bacteria  normal  normal 
 
 
-
 
NC_010658  SbBS512_E0648  succinyl-CoA synthetase subunit alpha  67.12 
 
 
289 aa  394  1e-108  Shigella boydii CDC 3083-94  Bacteria  normal  n/a   
 
 
-
 
NC_012793  GWCH70_1100  succinyl-CoA synthetase subunit alpha  65.97 
 
 
300 aa  394  1e-108  Geobacillus sp. WCH70  Bacteria  normal  0.0979666  n/a   
 
 
-
 
NC_009436  Ent638_1229  succinyl-CoA synthetase subunit alpha  66.44 
 
 
289 aa  391  1e-108  Enterobacter sp. 638  Bacteria  normal  normal  0.143875 
 
 
-
 
NC_007954  Sden_2180  succinyl-CoA synthetase, alpha subunit  68.17 
 
 
290 aa  393  1e-108  Shewanella denitrificans OS217  Bacteria  normal  n/a   
 
 
-
 
NC_012892  B21_00677  hypothetical protein  67.12 
 
 
289 aa  394  1e-108  Escherichia coli BL21  Bacteria  normal  n/a   
 
 
-
 
NC_009832  Spro_1270  succinyl-CoA synthetase, alpha subunit  67.69 
 
 
290 aa  394  1e-108  Serratia proteamaculans 568  Bacteria  normal  0.531627  hitchhiker  0.00241286 
 
 
-
 
NC_009800  EcHS_A0776  succinyl-CoA synthetase subunit alpha  67.12 
 
 
289 aa  394  1e-108  Escherichia coli HS  Bacteria  normal  n/a   
 
 
-
 
NC_008254  Meso_3397  succinyl-CoA synthetase subunit alpha  69.21 
 
 
303 aa  393  1e-108  Chelativorans sp. BNC1  Bacteria  normal  n/a   
 
 
-
 
NC_011353  ECH74115_0821  succinyl-CoA synthetase subunit alpha  67.12 
 
 
289 aa  394  1e-108  Escherichia coli O157:H7 str. EC4115  Bacteria  normal  normal 
 
 
-
 
NC_013456  VEA_004109  succinyl-CoA ligase [ADP-forming] alpha chain  66.55 
 
 
290 aa  393  1e-108  Vibrio sp. Ex25  Bacteria  normal  n/a   
 
 
-
 
NC_008700  Sama_1430  succinyl-CoA synthetase alpha chain  67.24 
 
 
290 aa  392  1e-108  Shewanella amazonensis SB2B  Bacteria  normal  0.204322  normal 
 
 
-
 
NC_011989  Avi_4124  succinyl-CoA synthetase subunit alpha  70.41 
 
 
300 aa  391  1e-108  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_010506  Swoo_1840  succinyl-CoA synthetase, alpha subunit  66.78 
 
 
290 aa  388  1e-107  Shewanella woodyi ATCC 51908  Bacteria  hitchhiker  0.00135274  normal  0.0561968 
 
 
-
 
NC_011205  SeD_A0833  succinyl-CoA synthetase subunit alpha  66.1 
 
 
289 aa  389  1e-107  Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853  Bacteria  normal  0.0260305  normal 
 
 
-
 
NC_009457  VC0395_A1670  succinyl-CoA synthetase subunit alpha  66.21 
 
 
290 aa  389  1e-107  Vibrio cholerae O395  Bacteria  normal  n/a   
 
 
-
 
NC_011663  Sbal223_1839  succinyl-CoA synthetase, alpha subunit  66.44 
 
 
290 aa  387  1e-107  Shewanella baltica OS223  Bacteria  hitchhiker  0.00249209  normal  0.0388751 
 
 
-
 
NC_013411  GYMC61_1993  succinyl-CoA synthetase subunit alpha  65.62 
 
 
300 aa  388  1e-107  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_011083  SeHA_C0862  succinyl-CoA synthetase subunit alpha  66.44 
 
 
289 aa  390  1e-107  Salmonella enterica subsp. enterica serovar Heidelberg str. SL476  Bacteria  normal  normal  0.0472557 
 
 
-
 
NC_011094  SeSA_A0895  succinyl-CoA synthetase subunit alpha  66.44 
 
 
289 aa  390  1e-107  Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633  Bacteria  normal  0.0404555  normal 
 
 
-
 
NC_009636  Smed_2942  succinyl-CoA synthetase subunit alpha  69.73 
 
 
300 aa  389  1e-107  Sinorhizobium medicae WSM419  Bacteria  normal  normal 
 
 
-
 
NC_009997  Sbal195_2625  succinyl-CoA synthetase, alpha subunit  66.44 
 
 
290 aa  387  1e-107  Shewanella baltica OS195  Bacteria  hitchhiker  0.0000598296  normal  0.140223 
 
 
-
 
NC_009092  Shew_1658  succinyl-CoA synthetase, alpha subunit  67.13 
 
 
290 aa  390  1e-107  Shewanella loihica PV-4  Bacteria  normal  0.0294249  normal  0.471073 
 
 
-
 
NC_012918  GM21_2788  succinyl-CoA synthetase, alpha subunit  65.52 
 
 
308 aa  388  1e-107  Geobacter sp. M21  Bacteria  n/a    normal 
 
 
-
 
NC_009665  Shew185_2505  succinyl-CoA synthetase, alpha subunit  66.44 
 
 
290 aa  387  1e-107  Shewanella baltica OS185  Bacteria  hitchhiker  0.00526313  n/a   
 
 
-
 
NC_009052  Sbal_2512  succinyl-CoA synthetase, alpha subunit  66.44 
 
 
290 aa  387  1e-107  Shewanella baltica OS155  Bacteria  normal  0.498228  n/a   
 
 
-
 
NC_011080  SNSL254_A0798  succinyl-CoA synthetase subunit alpha  66.44 
 
 
289 aa  390  1e-107  Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  normal  0.0283915  normal  0.188512 
 
 
-
 
NC_011149  SeAg_B0772  succinyl-CoA synthetase subunit alpha  66.44 
 
 
289 aa  390  1e-107  Salmonella enterica subsp. enterica serovar Agona str. SL483  Bacteria  normal  n/a   
 
 
-
 
NC_011138  MADE_01878  Succinyl-CoA synthetase, alpha subunit  66.55 
 
 
290 aa  389  1e-107  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  n/a   
 
 
-
 
NC_011146  Gbem_1465  succinyl-CoA synthetase, alpha subunit  65.52 
 
 
308 aa  389  1e-107  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_011312  VSAL_I0849  succinyl-CoA synthetase subunit alpha  65.52 
 
 
290 aa  385  1e-106  Aliivibrio salmonicida LFI1238  Bacteria  normal  n/a   
 
 
-
 
NC_003909  BCE_3877  succinyl-CoA synthetase subunit alpha  64.24 
 
 
300 aa  384  1e-106  Bacillus cereus ATCC 10987  Bacteria  hitchhiker  0.0000526587  n/a   
 
 
-
 
NC_004310  BR1925  succinyl-CoA synthetase subunit alpha  68.37 
 
 
300 aa  384  1e-106  Brucella suis 1330  Bacteria  normal  n/a   
 
 
-
 
NC_006274  BCZK3594  succinyl-CoA synthetase subunit alpha  64.24 
 
 
300 aa  384  1e-106  Bacillus cereus E33L  Bacteria  normal  0.372712  n/a   
 
 
-
 
NC_009487  SaurJH9_1305  succinyl-CoA synthetase subunit alpha  63.92 
 
 
302 aa  386  1e-106  Staphylococcus aureus subsp. aureus JH9  Bacteria  normal  0.0212377  n/a   
 
 
-
 
NC_006368  lpp0600  succinyl-CoA synthetase, alpha subunit  65.4 
 
 
291 aa  385  1e-106  Legionella pneumophila str. Paris  Bacteria  n/a    n/a   
 
 
-
 
NC_006369  lpl0581  succinyl-CoA synthetase, alpha subunit  65.4 
 
 
291 aa  385  1e-106  Legionella pneumophila str. Lens  Bacteria  n/a    n/a   
 
 
-
 
NC_007354  Ecaj_0147  succinyl-CoA synthetase (ADP-forming) alpha subunit  68.37 
 
 
295 aa  384  1e-106  Ehrlichia canis str. Jake  Bacteria  normal  0.0510279  n/a   
 
 
-
 
NC_007530  GBAA_3973  succinyl-CoA synthetase subunit alpha  64.24 
 
 
300 aa  384  1e-106  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  hitchhiker  0.00161204  n/a   
 
 
-
 
NC_009505  BOV_1853  succinyl-CoA synthetase subunit alpha  68.37 
 
 
300 aa  385  1e-106  Brucella ovis ATCC 25840  Bacteria  normal  n/a   
 
 
-
 
NC_008347  Mmar10_2818  succinyl-CoA synthetase subunit alpha  68.33 
 
 
302 aa  385  1e-106  Maricaulis maris MCS10  Bacteria  normal  normal 
 
 
-
 
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