More than 300 homologs were found in PanDaTox collection
for query gene TM1040_3398 on replicon NC_008043
Organism: Ruegeria sp. TM1040



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_008043  TM1040_3398  binding-protein-dependent transport systems inner membrane component  100 
 
 
298 aa  595  1e-169  Ruegeria sp. TM1040  Bacteria  normal  0.0164712  normal  0.951999 
 
 
-
 
NC_009620  Smed_4978  binding-protein-dependent transport systems inner membrane component  71.86 
 
 
298 aa  426  1e-118  Sinorhizobium medicae WSM419  Bacteria  normal  0.692905  normal  0.0538219 
 
 
-
 
NC_004310  BR0236  sugar ABC transporter, permease protein  74.64 
 
 
307 aa  415  9.999999999999999e-116  Brucella suis 1330  Bacteria  normal  n/a   
 
 
-
 
NC_009505  BOV_0229  sugar ABC transporter, permease protein  74.29 
 
 
307 aa  413  1e-114  Brucella ovis ATCC 25840  Bacteria  normal  n/a   
 
 
-
 
NC_009667  Oant_0310  binding-protein-dependent transport systems inner membrane component  73.26 
 
 
297 aa  400  9.999999999999999e-111  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  0.166982  n/a   
 
 
-
 
NC_008786  Veis_2279  binding-protein-dependent transport systems inner membrane component  69.47 
 
 
292 aa  363  1e-99  Verminephrobacter eiseniae EF01-2  Bacteria  normal  normal 
 
 
-
 
NC_011729  PCC7424_1896  binding-protein-dependent transport systems inner membrane component  36.43 
 
 
296 aa  177  3e-43  Cyanothece sp. PCC 7424  Bacteria  n/a    hitchhiker  1.0543799999999999e-20 
 
 
-
 
NC_010003  Pmob_0306  binding-protein-dependent transport systems inner membrane component  37.41 
 
 
294 aa  176  4e-43  Petrotoga mobilis SJ95  Bacteria  normal  n/a   
 
 
-
 
NC_009338  Mflv_3776  binding-protein-dependent transport systems inner membrane component  34.64 
 
 
286 aa  176  4e-43  Mycobacterium gilvum PYR-GCK  Bacteria  normal  0.771132  normal  0.363599 
 
 
-
 
NC_008726  Mvan_2623  binding-protein-dependent transport systems inner membrane component  33.33 
 
 
287 aa  169  4e-41  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  normal 
 
 
-
 
NC_009636  Smed_2455  binding-protein-dependent transport systems inner membrane component  32.98 
 
 
313 aa  164  2.0000000000000002e-39  Sinorhizobium medicae WSM419  Bacteria  normal  normal 
 
 
-
 
NC_010320  Teth514_0396  binding-protein-dependent transport systems inner membrane component  36.58 
 
 
307 aa  162  7e-39  Thermoanaerobacter sp. X514  Bacteria  normal  0.701562  n/a   
 
 
-
 
NC_008541  Arth_3686  binding-protein-dependent transport systems inner membrane component  34.19 
 
 
310 aa  160  2e-38  Arthrobacter sp. FB24  Bacteria  normal  n/a   
 
 
-
 
NC_012848  Rleg_5199  binding-protein-dependent transport systems inner membrane component  31.64 
 
 
312 aa  159  4e-38  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal  0.0867066 
 
 
-
 
NC_007643  Rru_A1261  binding-protein dependent transport system inner membrane protein  34.6 
 
 
298 aa  159  4e-38  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  0.196832  n/a   
 
 
-
 
NC_008146  Mmcs_2419  binding-protein-dependent transport systems inner membrane component  32.5 
 
 
286 aa  159  7e-38  Mycobacterium sp. MCS  Bacteria  normal  0.235933  n/a   
 
 
-
 
NC_008705  Mkms_2464  binding-protein-dependent transport systems inner membrane component  32.5 
 
 
286 aa  159  7e-38  Mycobacterium sp. KMS  Bacteria  normal  0.80505  normal 
 
 
-
 
NC_009077  Mjls_2458  binding-protein-dependent transport systems inner membrane component  32.5 
 
 
286 aa  159  7e-38  Mycobacterium sp. JLS  Bacteria  normal  0.524108  normal 
 
 
-
 
NC_011368  Rleg2_5469  binding-protein-dependent transport systems inner membrane component  31.02 
 
 
313 aa  157  2e-37  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal  0.394829 
 
 
-
 
NC_013595  Sros_5739  ABC transporter permease  31.65 
 
 
318 aa  157  3e-37  Streptosporangium roseum DSM 43021  Bacteria  normal  normal  0.184804 
 
 
-
 
NC_007802  Jann_1389  binding-protein-dependent transport systems inner membrane component  31.6 
 
 
300 aa  155  6e-37  Jannaschia sp. CCS1  Bacteria  normal  0.0114019  normal  0.0892858 
 
 
-
 
NC_011886  Achl_2900  binding-protein-dependent transport systems inner membrane component  35.9 
 
 
295 aa  154  1e-36  Arthrobacter chlorophenolicus A6  Bacteria  n/a    normal 
 
 
-
 
NC_009921  Franean1_7050  binding-protein-dependent transport systems inner membrane component  36.14 
 
 
330 aa  155  1e-36  Frankia sp. EAN1pec  Bacteria  normal  0.0817185  normal 
 
 
-
 
NC_013411  GYMC61_2958  binding-protein-dependent transport systems inner membrane component  33.76 
 
 
435 aa  154  2.9999999999999998e-36  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_011884  Cyan7425_3980  binding-protein-dependent transport systems inner membrane component  31.68 
 
 
299 aa  152  4e-36  Cyanothece sp. PCC 7425  Bacteria  normal  hitchhiker  0.00655631 
 
 
-
 
NC_009667  Oant_0362  binding-protein-dependent transport systems inner membrane component  30.57 
 
 
312 aa  152  5e-36  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  0.541424  n/a   
 
 
-
 
NC_007908  Rfer_0953  binding-protein-dependent transport systems inner membrane component  33.2 
 
 
292 aa  152  7e-36  Rhodoferax ferrireducens T118  Bacteria  normal  0.568052  n/a   
 
 
-
 
NC_009485  BBta_1755  ABC transporter permease  29.63 
 
 
312 aa  152  8.999999999999999e-36  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.576454  normal  0.392142 
 
 
-
 
NC_009636  Smed_0187  binding-protein-dependent transport systems inner membrane component  33.57 
 
 
307 aa  152  8.999999999999999e-36  Sinorhizobium medicae WSM419  Bacteria  normal  normal 
 
 
-
 
NC_007604  Synpcc7942_0949  permease protein of sugar ABC transporter  36.33 
 
 
292 aa  151  1e-35  Synechococcus elongatus PCC 7942  Bacteria  normal  0.688345  normal 
 
 
-
 
NC_008686  Pden_1048  binding-protein-dependent transport systems inner membrane component  32.75 
 
 
308 aa  150  3e-35  Paracoccus denitrificans PD1222  Bacteria  normal  normal 
 
 
-
 
NC_014213  Mesil_3227  extracellular solute-binding protein family 1  31.06 
 
 
307 aa  149  4e-35  Meiothermus silvanus DSM 9946  Bacteria  decreased coverage  0.00159401  normal  0.987884 
 
 
-
 
NC_014213  Mesil_3421  binding-protein-dependent transport systems inner membrane component  31.06 
 
 
307 aa  149  4e-35  Meiothermus silvanus DSM 9946  Bacteria  normal  0.556907  normal 
 
 
-
 
NC_014212  Mesil_3057  binding-protein-dependent transport systems inner membrane component  33.82 
 
 
290 aa  148  1.0000000000000001e-34  Meiothermus silvanus DSM 9946  Bacteria  normal  normal 
 
 
-
 
NC_009718  Fnod_0449  binding-protein-dependent transport systems inner membrane component  33.57 
 
 
295 aa  148  1.0000000000000001e-34  Fervidobacterium nodosum Rt17-B1  Bacteria  normal  0.982578  n/a   
 
 
-
 
NC_008541  Arth_0049  binding-protein-dependent transport systems inner membrane component  34.8 
 
 
295 aa  147  1.0000000000000001e-34  Arthrobacter sp. FB24  Bacteria  normal  n/a   
 
 
-
 
NC_010676  Bphyt_5637  binding-protein-dependent transport systems inner membrane component  33.21 
 
 
318 aa  147  1.0000000000000001e-34  Burkholderia phytofirmans PsJN  Bacteria  normal  normal 
 
 
-
 
NC_008010  Dgeo_2820  binding-protein-dependent transport systems inner membrane component  36.13 
 
 
305 aa  147  3e-34  Deinococcus geothermalis DSM 11300  Bacteria  normal  n/a   
 
 
-
 
NC_012791  Vapar_3349  binding-protein-dependent transport systems inner membrane component  32.06 
 
 
291 aa  146  3e-34  Variovorax paradoxus S110  Bacteria  normal  0.230089  n/a   
 
 
-
 
NC_008699  Noca_3682  binding-protein-dependent transport systems inner membrane component  36.15 
 
 
283 aa  146  4.0000000000000006e-34  Nocardioides sp. JS614  Bacteria  normal  n/a   
 
 
-
 
NC_011366  Rleg2_5745  binding-protein-dependent transport systems inner membrane component  32.83 
 
 
293 aa  146  4.0000000000000006e-34  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal  0.555685 
 
 
-
 
NC_013131  Caci_4319  binding-protein-dependent transport systems inner membrane component  31.65 
 
 
312 aa  146  5e-34  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.778687  hitchhiker  0.00185272 
 
 
-
 
NC_013526  Tter_2208  binding-protein-dependent transport systems inner membrane component  32.74 
 
 
306 aa  146  5e-34  Thermobaculum terrenum ATCC BAA-798  Bacteria  normal  0.739705  n/a   
 
 
-
 
NC_010625  Bphy_6370  binding-protein-dependent transport systems inner membrane component  33.33 
 
 
318 aa  146  5e-34  Burkholderia phymatum STM815  Bacteria  normal  normal 
 
 
-
 
NC_008699  Noca_0870  binding-protein-dependent transport systems inner membrane component  31.58 
 
 
309 aa  145  6e-34  Nocardioides sp. JS614  Bacteria  normal  0.800905  n/a   
 
 
-
 
NC_009664  Krad_2091  binding-protein-dependent transport systems inner membrane component  33.87 
 
 
292 aa  145  6e-34  Kineococcus radiotolerans SRS30216  Bacteria  normal  normal 
 
 
-
 
NC_010483  TRQ2_0971  binding-protein-dependent transport systems inner membrane component  33.1 
 
 
293 aa  145  7.0000000000000006e-34  Thermotoga sp. RQ2  Bacteria  normal  0.0994152  n/a   
 
 
-
 
NC_009486  Tpet_0955  binding-protein-dependent transport systems inner membrane component  33.1 
 
 
293 aa  145  7.0000000000000006e-34  Thermotoga petrophila RKU-1  Bacteria  normal  n/a   
 
 
-
 
NC_011830  Dhaf_2631  binding-protein-dependent transport systems inner membrane component  33.7 
 
 
305 aa  145  1e-33  Desulfitobacterium hafniense DCB-2  Bacteria  normal  n/a   
 
 
-
 
NC_009952  Dshi_0548  ABC-type sugar / sn-glycerol-3-phosphate transport system permease protein ugpA  35 
 
 
288 aa  144  2e-33  Dinoroseobacter shibae DFL 12  Bacteria  normal  normal 
 
 
-
 
NC_014212  Mesil_1016  binding-protein-dependent transport systems inner membrane component  33.82 
 
 
301 aa  144  2e-33  Meiothermus silvanus DSM 9946  Bacteria  normal  normal 
 
 
-
 
NC_009664  Krad_1114  binding-protein-dependent transport systems inner membrane component  33.1 
 
 
319 aa  143  3e-33  Kineococcus radiotolerans SRS30216  Bacteria  normal  0.32149  normal  0.356013 
 
 
-
 
NC_009832  Spro_2525  binding-protein-dependent transport systems inner membrane component  34.05 
 
 
330 aa  143  4e-33  Serratia proteamaculans 568  Bacteria  normal  normal 
 
 
-
 
NC_012848  Rleg_4708  binding-protein-dependent transport systems inner membrane component  32.08 
 
 
293 aa  142  5e-33  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal 
 
 
-
 
NC_009718  Fnod_0627  binding-protein-dependent transport systems inner membrane component  30.3 
 
 
294 aa  142  7e-33  Fervidobacterium nodosum Rt17-B1  Bacteria  hitchhiker  0.0000000558297  n/a   
 
 
-
 
NC_011886  Achl_3074  binding-protein-dependent transport systems inner membrane component  31.82 
 
 
314 aa  141  9.999999999999999e-33  Arthrobacter chlorophenolicus A6  Bacteria  n/a    normal 
 
 
-
 
NC_010003  Pmob_1491  binding-protein-dependent transport systems inner membrane component  28.87 
 
 
289 aa  142  9.999999999999999e-33  Petrotoga mobilis SJ95  Bacteria  normal  n/a   
 
 
-
 
NC_012850  Rleg_2427  binding-protein-dependent transport systems inner membrane component  32.17 
 
 
322 aa  141  9.999999999999999e-33  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.535373  normal  0.626108 
 
 
-
 
NC_007802  Jann_3554  binding-protein-dependent transport systems inner membrane component  34.52 
 
 
311 aa  140  1.9999999999999998e-32  Jannaschia sp. CCS1  Bacteria  normal  normal 
 
 
-
 
NC_013169  Ksed_20480  carbohydrate ABC transporter membrane protein  34.72 
 
 
318 aa  140  3e-32  Kytococcus sedentarius DSM 20547  Bacteria  normal  0.0521728  normal  0.389193 
 
 
-
 
NC_012848  Rleg_4941  binding-protein-dependent transport systems inner membrane component  31.56 
 
 
309 aa  139  3.9999999999999997e-32  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal 
 
 
-
 
NC_010003  Pmob_0028  binding-protein-dependent transport systems inner membrane component  33.45 
 
 
300 aa  140  3.9999999999999997e-32  Petrotoga mobilis SJ95  Bacteria  unclonable  0.0000000378352  n/a   
 
 
-
 
NC_009616  Tmel_1819  binding-protein-dependent transport systems inner membrane component  31.03 
 
 
293 aa  139  4.999999999999999e-32  Thermosipho melanesiensis BI429  Bacteria  normal  0.215175  n/a   
 
 
-
 
NC_009654  Mmwyl1_2009  binding-protein-dependent transport systems inner membrane component  31.45 
 
 
291 aa  139  4.999999999999999e-32  Marinomonas sp. MWYL1  Bacteria  normal  normal 
 
 
-
 
NC_009485  BBta_7824  putative ABC transporter permease protein  34.26 
 
 
295 aa  139  6e-32  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal 
 
 
-
 
NC_007494  RSP_3673  ABC sugar transporter, inner membrane subunit  33.69 
 
 
308 aa  139  7e-32  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  0.246744  n/a   
 
 
-
 
NC_009050  Rsph17029_3408  binding-protein-dependent transport systems inner membrane component  33.69 
 
 
308 aa  139  7e-32  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  0.166359  normal  0.855546 
 
 
-
 
NC_011899  Hore_22990  binding-protein-dependent transport systems inner membrane component  28.06 
 
 
286 aa  139  7.999999999999999e-32  Halothermothrix orenii H 168  Bacteria  hitchhiker  0.00000108841  n/a   
 
 
-
 
NC_009636  Smed_2698  binding-protein-dependent transport systems inner membrane component  32.62 
 
 
295 aa  138  8.999999999999999e-32  Sinorhizobium medicae WSM419  Bacteria  normal  0.0832027  normal 
 
 
-
 
NC_007952  Bxe_B0419  ABC sugar transporter, inner membrane subunit  29.31 
 
 
296 aa  138  1e-31  Burkholderia xenovorans LB400  Bacteria  normal  normal 
 
 
-
 
NC_013131  Caci_2623  binding-protein-dependent transport systems inner membrane component  30.07 
 
 
330 aa  138  1e-31  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.0584633  normal 
 
 
-
 
NC_013525  Tter_0830  binding-protein-dependent transport systems inner membrane component  30.71 
 
 
309 aa  138  1e-31  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_010465  YPK_2279  binding-protein-dependent transport systems inner membrane component  31.4 
 
 
286 aa  137  1e-31  Yersinia pseudotuberculosis YPIII  Bacteria  normal  n/a   
 
 
-
 
NC_010676  Bphyt_7207  binding-protein-dependent transport systems inner membrane component  28.97 
 
 
296 aa  138  1e-31  Burkholderia phytofirmans PsJN  Bacteria  normal  normal 
 
 
-
 
NC_009708  YpsIP31758_2171  carbohydrate ABC transporter permease  31.4 
 
 
280 aa  137  2e-31  Yersinia pseudotuberculosis IP 31758  Bacteria  normal  0.0580768  n/a   
 
 
-
 
NC_012669  Bcav_0321  binding-protein-dependent transport systems inner membrane component  30.28 
 
 
316 aa  137  2e-31  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal 
 
 
-
 
NC_010159  YpAngola_A2083  carbohydrate ABC transporter permease  31.4 
 
 
286 aa  136  3.0000000000000003e-31  Yersinia pestis Angola  Bacteria  normal  normal  0.0183943 
 
 
-
 
NC_009664  Krad_4401  binding-protein-dependent transport systems inner membrane component  32.79 
 
 
316 aa  136  4e-31  Kineococcus radiotolerans SRS30216  Bacteria  normal  normal 
 
 
-
 
NC_010623  Bphy_4058  binding-protein-dependent transport systems inner membrane component  28.52 
 
 
309 aa  136  4e-31  Burkholderia phymatum STM815  Bacteria  normal  normal  0.801646 
 
 
-
 
NC_013526  Tter_2000  binding-protein-dependent transport systems inner membrane component  29.58 
 
 
319 aa  136  4e-31  Thermobaculum terrenum ATCC BAA-798  Bacteria  normal  n/a   
 
 
-
 
NC_009654  Mmwyl1_0024  binding-protein-dependent transport systems inner membrane component  31.39 
 
 
320 aa  136  4e-31  Marinomonas sp. MWYL1  Bacteria  normal  0.227719  normal  0.433481 
 
 
-
 
NC_013595  Sros_3494  binding-protein-dependent transport systems inner membrane component  33.19 
 
 
311 aa  136  5e-31  Streptosporangium roseum DSM 43021  Bacteria  normal  0.716912  normal  0.704951 
 
 
-
 
NC_011004  Rpal_0131  binding-protein-dependent transport systems inner membrane component  33.33 
 
 
319 aa  135  6.0000000000000005e-31  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.128042  n/a   
 
 
-
 
NC_013093  Amir_2919  binding-protein-dependent transport systems inner membrane component  33.7 
 
 
310 aa  135  8e-31  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_010320  Teth514_1092  binding-protein-dependent transport systems inner membrane component  32.17 
 
 
291 aa  135  9e-31  Thermoanaerobacter sp. X514  Bacteria  normal  n/a   
 
 
-
 
NC_013595  Sros_3074  sugar ABC transporter permease protein  31.38 
 
 
307 aa  134  9.999999999999999e-31  Streptosporangium roseum DSM 43021  Bacteria  normal  normal  0.146884 
 
 
-
 
NC_012848  Rleg_4750  binding-protein-dependent transport systems inner membrane component  31.29 
 
 
299 aa  135  9.999999999999999e-31  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.62916  normal  0.701692 
 
 
-
 
NC_009667  Oant_0353  binding-protein-dependent transport systems inner membrane component  31.46 
 
 
317 aa  135  9.999999999999999e-31  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  0.0740262  n/a   
 
 
-
 
NC_009939  Dgeo_2918  ABC-type sugar transport system, permease component  31.18 
 
 
305 aa  134  9.999999999999999e-31  Deinococcus geothermalis DSM 11300  Bacteria  n/a    n/a   
 
 
-
 
NC_012669  Bcav_3774  binding-protein-dependent transport systems inner membrane component  30.98 
 
 
319 aa  135  9.999999999999999e-31  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.198584  normal 
 
 
-
 
NC_014165  Tbis_3250  binding-protein-dependent transporter inner membrane component  32.85 
 
 
310 aa  135  9.999999999999999e-31  Thermobispora bispora DSM 43833  Bacteria  normal  normal 
 
 
-
 
NC_009338  Mflv_3852  binding-protein-dependent transport systems inner membrane component  34.78 
 
 
310 aa  135  9.999999999999999e-31  Mycobacterium gilvum PYR-GCK  Bacteria  normal  normal  0.0634568 
 
 
-
 
NC_007778  RPB_0176  binding-protein dependent transport system inner membrane protein  34.31 
 
 
314 aa  134  1.9999999999999998e-30  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal 
 
 
-
 
NC_010483  TRQ2_0670  binding-protein-dependent transport systems inner membrane component  30.74 
 
 
294 aa  134  1.9999999999999998e-30  Thermotoga sp. RQ2  Bacteria  normal  n/a   
 
 
-
 
NC_013757  Gobs_3933  binding-protein-dependent transport systems inner membrane component  32.66 
 
 
320 aa  133  3e-30  Geodermatophilus obscurus DSM 43160  Bacteria  normal  0.292649  n/a   
 
 
-
 
NC_007958  RPD_3149  binding-protein-dependent transport systems inner membrane component  33.58 
 
 
315 aa  134  3e-30  Rhodopseudomonas palustris BisB5  Bacteria  normal  0.0566553  normal  0.330059 
 
 
-
 
NC_012669  Bcav_2833  binding-protein-dependent transport systems inner membrane component  31.14 
 
 
319 aa  133  3e-30  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.0200859  normal 
 
 
-
 
NC_008726  Mvan_2543  binding-protein-dependent transport systems inner membrane component  34.42 
 
 
310 aa  134  3e-30  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  0.944367  normal 
 
 
-
 
NC_009486  Tpet_0645  binding-protein-dependent transport systems inner membrane component  30.07 
 
 
309 aa  133  3.9999999999999996e-30  Thermotoga petrophila RKU-1  Bacteria  hitchhiker  0.000282921  n/a   
 
 
-
 
NC_011899  Hore_20510  binding-protein-dependent transport systems inner membrane component  30.31 
 
 
290 aa  133  5e-30  Halothermothrix orenii H 168  Bacteria  normal  0.0790749  n/a   
 
 
-
 
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