More than 300 homologs were found in PanDaTox collection
for query gene TM1040_3059 on replicon NC_008043
Organism: Ruegeria sp. TM1040



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_009428  Rsph17025_2462  acyl-CoA dehydrogenase domain-containing protein  71.05 
 
 
562 aa  808    Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  normal  0.372229 
 
 
-
 
NC_007493  RSP_0742  acyl-CoA dehydrogenase  70.7 
 
 
562 aa  783    Rhodobacter sphaeroides 2.4.1  Bacteria  normal  n/a   
 
 
-
 
NC_007802  Jann_3894  acyl-CoA dehydrogenase-like  65.5 
 
 
584 aa  765    Jannaschia sp. CCS1  Bacteria  normal  normal  0.0512986 
 
 
-
 
NC_009049  Rsph17029_2398  acyl-CoA dehydrogenase domain-containing protein  70.7 
 
 
562 aa  782    Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  0.394065  normal  0.935869 
 
 
-
 
NC_008686  Pden_0434  acyl-CoA dehydrogenase domain-containing protein  65.54 
 
 
563 aa  740    Paracoccus denitrificans PD1222  Bacteria  normal  normal 
 
 
-
 
NC_009952  Dshi_3085  putative acyl-CoA dehydrogenase family protein  69.93 
 
 
571 aa  806    Dinoroseobacter shibae DFL 12  Bacteria  normal  0.195202  normal 
 
 
-
 
NC_008043  TM1040_3059  acyl-CoA dehydrogenase-like  100 
 
 
570 aa  1167    Ruegeria sp. TM1040  Bacteria  normal  normal 
 
 
-
 
NC_009719  Plav_0775  acyl-CoA dehydrogenase domain-containing protein  50.51 
 
 
586 aa  551  1e-155  Parvibaculum lavamentivorans DS-1  Bacteria  normal  0.66382  normal 
 
 
-
 
NC_011369  Rleg2_0555  acyl-CoA dehydrogenase domain protein  49.05 
 
 
592 aa  516  1.0000000000000001e-145  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal  0.539594 
 
 
-
 
NC_009667  Oant_0528  acyl-CoA dehydrogenase domain-containing protein  49.74 
 
 
592 aa  514  1e-144  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  0.71797  n/a   
 
 
-
 
NC_008347  Mmar10_0835  acyl-CoA dehydrogenase domain-containing protein  51.01 
 
 
585 aa  513  1e-144  Maricaulis maris MCS10  Bacteria  normal  hitchhiker  0.00122363 
 
 
-
 
NC_004310  BR0412  acyl-CoA dehydrogenase family protein  49.74 
 
 
592 aa  510  1e-143  Brucella suis 1330  Bacteria  normal  n/a   
 
 
-
 
NC_009505  BOV_0420  acyl-CoA dehydrogenase family protein  49.74 
 
 
592 aa  510  1e-143  Brucella ovis ATCC 25840  Bacteria  normal  n/a   
 
 
-
 
NC_010338  Caul_4489  acyl-CoA dehydrogenase domain-containing protein  49.91 
 
 
581 aa  502  1e-141  Caulobacter sp. K31  Bacteria  normal  normal  0.376796 
 
 
-
 
NC_012850  Rleg_0600  acyl-CoA dehydrogenase domain protein  48.02 
 
 
592 aa  500  1e-140  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.198315  normal  0.545075 
 
 
-
 
NC_007406  Nwi_0637  acyl-CoA dehydrogenase  47.03 
 
 
592 aa  495  9.999999999999999e-139  Nitrobacter winogradskyi Nb-255  Bacteria  normal  0.337916  normal 
 
 
-
 
NC_009485  BBta_2498  putative acyl-CoA dehydrogenase  47.36 
 
 
592 aa  494  9.999999999999999e-139  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.242453  normal 
 
 
-
 
NC_008254  Meso_0723  acyl-CoA dehydrogenase-like  47.89 
 
 
591 aa  491  1e-137  Chelativorans sp. BNC1  Bacteria  normal  n/a   
 
 
-
 
NC_009636  Smed_0487  acyl-CoA dehydrogenase domain-containing protein  47.55 
 
 
593 aa  488  1e-136  Sinorhizobium medicae WSM419  Bacteria  normal  normal 
 
 
-
 
NC_007964  Nham_0782  acyl-CoA dehydrogenase-like  46.77 
 
 
594 aa  486  1e-136  Nitrobacter hamburgensis X14  Bacteria  normal  n/a   
 
 
-
 
NC_010511  M446_2370  acyl-CoA dehydrogenase domain-containing protein  50.47 
 
 
592 aa  488  1e-136  Methylobacterium sp. 4-46  Bacteria  normal  0.734767  normal 
 
 
-
 
NC_007298  Daro_1555  Acyl-CoA dehydrogenase, C-terminal:Acyl-CoA dehydrogenase, central region  47.92 
 
 
597 aa  485  1e-135  Dechloromonas aromatica RCB  Bacteria  hitchhiker  0.000406482  normal  0.0195693 
 
 
-
 
NC_011989  Avi_0986  acyl-CoA dehydrogenase  47.35 
 
 
591 aa  483  1e-135  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_007925  RPC_1156  acyl-CoA dehydrogenase-like  48.35 
 
 
615 aa  484  1e-135  Rhodopseudomonas palustris BisB18  Bacteria  normal  0.291998  normal 
 
 
-
 
NC_009511  Swit_1469  acyl-CoA dehydrogenase domain-containing protein  46.66 
 
 
571 aa  480  1e-134  Sphingomonas wittichii RW1  Bacteria  normal  0.16092  normal 
 
 
-
 
NC_011757  Mchl_4472  acyl-CoA dehydrogenase domain protein  47.54 
 
 
587 aa  479  1e-134  Methylobacterium chloromethanicum CM4  Bacteria  normal  0.71418  normal 
 
 
-
 
NC_010172  Mext_4104  acyl-CoA dehydrogenase domain-containing protein  47.18 
 
 
587 aa  479  1e-134  Methylobacterium extorquens PA1  Bacteria  normal  0.307974  normal  0.918519 
 
 
-
 
NC_010725  Mpop_4586  acyl-CoA dehydrogenase domain protein  48.15 
 
 
587 aa  474  1e-132  Methylobacterium populi BJ001  Bacteria  normal  0.0241066  normal 
 
 
-
 
NC_007643  Rru_A0435  Acyl-CoA dehydrogenase  48.45 
 
 
589 aa  472  1e-132  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  n/a   
 
 
-
 
NC_011004  Rpal_1028  acyl-CoA dehydrogenase domain protein  47.09 
 
 
593 aa  474  1e-132  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_011894  Mnod_2841  acyl-CoA dehydrogenase domain protein  48.77 
 
 
592 aa  473  1e-132  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.404549  n/a   
 
 
-
 
NC_010505  Mrad2831_3829  acyl-CoA dehydrogenase domain-containing protein  48.68 
 
 
579 aa  469  1.0000000000000001e-131  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal  0.867715 
 
 
-
 
NC_009654  Mmwyl1_2260  acyl-CoA dehydrogenase domain-containing protein  46.02 
 
 
589 aa  469  1.0000000000000001e-131  Marinomonas sp. MWYL1  Bacteria  normal  normal  0.602591 
 
 
-
 
NC_010581  Bind_3270  acyl-CoA dehydrogenase domain-containing protein  45.64 
 
 
589 aa  465  9.999999999999999e-131  Beijerinckia indica subsp. indica ATCC 9039  Bacteria  normal  0.928041  normal 
 
 
-
 
NC_007298  Daro_0227  Acyl-CoA dehydrogenase, C-terminal:Acyl-CoA dehydrogenase, central region  45.66 
 
 
592 aa  463  1e-129  Dechloromonas aromatica RCB  Bacteria  normal  0.100884  normal 
 
 
-
 
NC_009720  Xaut_3266  acyl-CoA dehydrogenase domain-containing protein  46.67 
 
 
596 aa  464  1e-129  Xanthobacter autotrophicus Py2  Bacteria  normal  normal 
 
 
-
 
NC_010501  PputW619_3353  acyl-CoA dehydrogenase domain-containing protein  46.5 
 
 
594 aa  462  1e-129  Pseudomonas putida W619  Bacteria  normal  normal 
 
 
-
 
NC_008789  Hhal_1493  acyl-CoA dehydrogenase domain-containing protein  44.48 
 
 
593 aa  459  9.999999999999999e-129  Halorhodospira halophila SL1  Bacteria  normal  n/a   
 
 
-
 
NC_012560  Avin_16400  Acyl-CoA dehydrogenase  45.59 
 
 
614 aa  459  9.999999999999999e-129  Azotobacter vinelandii DJ  Bacteria  normal  n/a   
 
 
-
 
NC_007973  Rmet_0739  acyl-CoA dehydrogenase-like protein  44.97 
 
 
594 aa  459  9.999999999999999e-129  Cupriavidus metallidurans CH34  Bacteria  decreased coverage  0.00752028  normal 
 
 
-
 
NC_007958  RPD_4298  acyl-CoA dehydrogenase-like  45.97 
 
 
593 aa  458  1e-127  Rhodopseudomonas palustris BisB5  Bacteria  normal  normal  0.10513 
 
 
-
 
NC_010623  Bphy_3938  acyl-CoA dehydrogenase domain-containing protein  45.17 
 
 
600 aa  454  1.0000000000000001e-126  Burkholderia phymatum STM815  Bacteria  normal  normal 
 
 
-
 
NC_007347  Reut_A2548  Acyl-CoA dehydrogenase, C-terminal:Acyl-CoA dehydrogenase, central region  44.63 
 
 
594 aa  452  1.0000000000000001e-126  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_007778  RPB_4454  Acyl-CoA dehydrogenase-like  46.34 
 
 
593 aa  453  1.0000000000000001e-126  Rhodopseudomonas palustris HaA2  Bacteria  normal  0.456849  normal 
 
 
-
 
NC_007912  Sde_3132  acyl-CoA dehydrogenase family protein  42.78 
 
 
589 aa  452  1.0000000000000001e-126  Saccharophagus degradans 2-40  Bacteria  normal  normal 
 
 
-
 
NC_008048  Sala_1770  acyl-CoA dehydrogenase-like protein  45.36 
 
 
580 aa  454  1.0000000000000001e-126  Sphingopyxis alaskensis RB2256  Bacteria  normal  normal  0.270198 
 
 
-
 
NC_008228  Patl_0656  acyl-CoA dehydrogenase-like  43.46 
 
 
586 aa  452  1.0000000000000001e-126  Pseudoalteromonas atlantica T6c  Bacteria  normal  n/a   
 
 
-
 
NC_002947  PP_0370  acyl-CoA dehydrogenase domain-containing protein  43.12 
 
 
592 aa  449  1e-125  Pseudomonas putida KT2440  Bacteria  normal  normal 
 
 
-
 
NC_010322  PputGB1_0400  acyl-CoA dehydrogenase domain-containing protein  42.95 
 
 
592 aa  451  1e-125  Pseudomonas putida GB-1  Bacteria  normal  normal  0.672876 
 
 
-
 
NC_007298  Daro_1215  Acyl-CoA dehydrogenase, C-terminal:Acyl-CoA dehydrogenase, central region  43.93 
 
 
593 aa  451  1e-125  Dechloromonas aromatica RCB  Bacteria  normal  normal  0.967786 
 
 
-
 
NC_007347  Reut_A2140  Acyl-CoA dehydrogenase, C-terminal:Acyl-CoA dehydrogenase, central region  43.81 
 
 
600 aa  449  1e-125  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_009719  Plav_0462  acyl-CoA dehydrogenase domain-containing protein  42.47 
 
 
597 aa  452  1e-125  Parvibaculum lavamentivorans DS-1  Bacteria  normal  0.29438  normal 
 
 
-
 
NC_011662  Tmz1t_2265  acyl-CoA dehydrogenase domain protein  43.84 
 
 
598 aa  450  1e-125  Thauera sp. MZ1T  Bacteria  normal  0.086163  n/a   
 
 
-
 
NC_007951  Bxe_A1000  putative acyl-CoA dehydrogenase  42.31 
 
 
596 aa  451  1e-125  Burkholderia xenovorans LB400  Bacteria  normal  normal  0.881072 
 
 
-
 
NC_009484  Acry_0007  acyl-CoA dehydrogenase domain-containing protein  43.17 
 
 
596 aa  450  1e-125  Acidiphilium cryptum JF-5  Bacteria  normal  0.419421  n/a   
 
 
-
 
NC_009049  Rsph17029_0874  acyl-CoA dehydrogenase domain-containing protein  42.11 
 
 
591 aa  446  1.0000000000000001e-124  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  0.942858  normal  0.751206 
 
 
-
 
NC_009074  BURPS668_2865  acyl-CoA dehydrogenase domain-containing protein  43.83 
 
 
596 aa  446  1.0000000000000001e-124  Burkholderia pseudomallei 668  Bacteria  normal  n/a   
 
 
-
 
NC_009675  Anae109_3168  acyl-CoA dehydrogenase domain-containing protein  45.45 
 
 
598 aa  447  1.0000000000000001e-124  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  0.712846  normal 
 
 
-
 
NC_007434  BURPS1710b_2975  Acyl-CoA dehydrogenase  43.83 
 
 
596 aa  446  1.0000000000000001e-124  Burkholderia pseudomallei 1710b  Bacteria  normal  n/a   
 
 
-
 
NC_012560  Avin_17380  Acyl-CoA dehydrogenase  44.58 
 
 
594 aa  448  1.0000000000000001e-124  Azotobacter vinelandii DJ  Bacteria  decreased coverage  0.00730937  n/a   
 
 
-
 
NC_007493  RSP_2199  putative acyl-CoA dehydrogenase  42.11 
 
 
591 aa  447  1.0000000000000001e-124  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  0.202829  n/a   
 
 
-
 
NC_009656  PSPA7_0609  putative acyl-CoA dehydrogenase  43.12 
 
 
592 aa  445  1.0000000000000001e-124  Pseudomonas aeruginosa PA7  Bacteria  normal  0.666513  n/a   
 
 
-
 
NC_012560  Avin_25210  acyl-CoA dehydrogenase  44.88 
 
 
591 aa  446  1.0000000000000001e-124  Azotobacter vinelandii DJ  Bacteria  normal  0.885326  n/a   
 
 
-
 
NC_007952  Bxe_B0379  putative acyl-CoA dehydrogenase  42.28 
 
 
595 aa  448  1.0000000000000001e-124  Burkholderia xenovorans LB400  Bacteria  normal  normal 
 
 
-
 
NC_009512  Pput_0396  acyl-CoA dehydrogenase domain-containing protein  42.95 
 
 
592 aa  448  1.0000000000000001e-124  Pseudomonas putida F1  Bacteria  normal  0.352257  normal 
 
 
-
 
NC_009076  BURPS1106A_2926  acyl-CoA dehydrogenase domain-containing protein  43.83 
 
 
596 aa  446  1.0000000000000001e-124  Burkholderia pseudomallei 1106a  Bacteria  normal  n/a   
 
 
-
 
NC_010524  Lcho_2538  acyl-CoA dehydrogenase domain-containing protein  42.95 
 
 
596 aa  444  1e-123  Leptothrix cholodnii SP-6  Bacteria  n/a    decreased coverage  0.000216055 
 
 
-
 
NC_009428  Rsph17025_2293  acyl-CoA dehydrogenase domain-containing protein  42.13 
 
 
591 aa  445  1e-123  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  normal 
 
 
-
 
NC_007509  Bcep18194_C6872  Acyl-CoA dehydrogenase  44.22 
 
 
596 aa  442  1e-123  Burkholderia sp. 383  Bacteria  normal  0.388534  normal 
 
 
-
 
NC_007651  BTH_I1655  acyl-CoA dehydrogenase domain-containing protein  43.24 
 
 
596 aa  444  1e-123  Burkholderia thailandensis E264  Bacteria  normal  n/a   
 
 
-
 
NC_008463  PA14_06640  putative acyl-CoA dehydrogenase  43.29 
 
 
592 aa  444  1e-123  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal 
 
 
-
 
NC_010681  Bphyt_2983  acyl-CoA dehydrogenase domain protein  41.97 
 
 
596 aa  443  1e-123  Burkholderia phytofirmans PsJN  Bacteria  normal  0.143309  hitchhiker  0.00237955 
 
 
-
 
NC_010682  Rpic_2638  acyl-CoA dehydrogenase domain protein  46.88 
 
 
593 aa  444  1e-123  Ralstonia pickettii 12J  Bacteria  normal  normal 
 
 
-
 
NC_007336  Reut_C6368  Acyl-CoA dehydrogenase, C-terminal:Acyl-CoA dehydrogenase, central region  43.92 
 
 
594 aa  440  9.999999999999999e-123  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_007510  Bcep18194_A4177  Acyl-CoA dehydrogenase  44.22 
 
 
596 aa  441  9.999999999999999e-123  Burkholderia sp. 383  Bacteria  normal  0.0909918  normal  0.449875 
 
 
-
 
NC_007794  Saro_0127  acyl-CoA dehydrogenase-like  43.59 
 
 
572 aa  441  9.999999999999999e-123  Novosphingobium aromaticivorans DSM 12444  Bacteria  normal  0.662664  n/a   
 
 
-
 
NC_010505  Mrad2831_5758  acyl-CoA dehydrogenase domain-containing protein  43.87 
 
 
595 aa  441  9.999999999999999e-123  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal 
 
 
-
 
NC_008687  Pden_2868  acyl-CoA dehydrogenase domain-containing protein  42.03 
 
 
592 aa  441  9.999999999999999e-123  Paracoccus denitrificans PD1222  Bacteria  normal  normal  0.259312 
 
 
-
 
NC_010531  Pnec_1288  acyl-CoA dehydrogenase domain protein  43.79 
 
 
595 aa  437  1e-121  Polynucleobacter necessarius subsp. necessarius STIR1  Bacteria  normal  normal  0.197154 
 
 
-
 
NC_009076  BURPS1106A_0695  acyl-CoA dehydrogenase domain-containing protein  41.51 
 
 
595 aa  436  1e-121  Burkholderia pseudomallei 1106a  Bacteria  normal  0.832914  n/a   
 
 
-
 
NC_008392  Bamb_5773  acyl-CoA dehydrogenase domain-containing protein  44.82 
 
 
596 aa  436  1e-121  Burkholderia ambifaria AMMD  Bacteria  normal  normal  0.64556 
 
 
-
 
NC_010524  Lcho_3596  acyl-CoA dehydrogenase domain-containing protein  46.6 
 
 
593 aa  438  1e-121  Leptothrix cholodnii SP-6  Bacteria  n/a    normal  0.595481 
 
 
-
 
NC_010557  BamMC406_5533  acyl-CoA dehydrogenase domain-containing protein  45.76 
 
 
596 aa  437  1e-121  Burkholderia ambifaria MC40-6  Bacteria  normal  normal 
 
 
-
 
NC_007434  BURPS1710b_0857  acyl-CoA dehydrogenase domain-containing protein  41.51 
 
 
595 aa  436  1e-121  Burkholderia pseudomallei 1710b  Bacteria  normal  n/a   
 
 
-
 
NC_011662  Tmz1t_2488  acyl-CoA dehydrogenase domain protein  42.59 
 
 
595 aa  437  1e-121  Thauera sp. MZ1T  Bacteria  normal  0.187957  n/a   
 
 
-
 
NC_007963  Csal_2644  acyl-CoA dehydrogenase-like protein  49.89 
 
 
593 aa  438  1e-121  Chromohalobacter salexigens DSM 3043  Bacteria  normal  n/a   
 
 
-
 
NC_007973  Rmet_0385  acyl-CoA dehydrogenase-like protein  41.72 
 
 
595 aa  436  1e-121  Cupriavidus metallidurans CH34  Bacteria  normal  normal  0.13259 
 
 
-
 
NC_009074  BURPS668_0680  acyl-CoA dehydrogenase domain-containing protein  41.51 
 
 
595 aa  436  1e-121  Burkholderia pseudomallei 668  Bacteria  normal  n/a   
 
 
-
 
NC_008782  Ajs_2808  acyl-CoA dehydrogenase domain-containing protein  44.07 
 
 
596 aa  435  1e-120  Acidovorax sp. JS42  Bacteria  normal  0.612856  normal  0.525867 
 
 
-
 
NC_011138  MADE_01742  probable acyl-CoA dehydrogenase  41.99 
 
 
586 aa  433  1e-120  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  0.773956  n/a   
 
 
-
 
NC_007651  BTH_I0564  acyl-CoA dehydrogenase domain-containing protein  41.17 
 
 
595 aa  434  1e-120  Burkholderia thailandensis E264  Bacteria  normal  n/a   
 
 
-
 
NC_009720  Xaut_0623  acyl-CoA dehydrogenase domain-containing protein  45.03 
 
 
585 aa  433  1e-120  Xanthobacter autotrophicus Py2  Bacteria  normal  normal 
 
 
-
 
NC_010322  PputGB1_2808  acyl-CoA dehydrogenase domain-containing protein  43.46 
 
 
592 aa  435  1e-120  Pseudomonas putida GB-1  Bacteria  normal  0.566358  normal 
 
 
-
 
NC_008542  Bcen2424_2721  acyl-CoA dehydrogenase domain-containing protein  41.75 
 
 
595 aa  432  1e-120  Burkholderia cenocepacia HI2424  Bacteria  normal  0.440911  n/a   
 
 
-
 
NC_008060  Bcen_1555  acyl-CoA dehydrogenase-like  44 
 
 
596 aa  435  1e-120  Burkholderia cenocepacia AU 1054  Bacteria  normal  0.341728  n/a   
 
 
-
 
NC_008060  Bcen_2109  acyl-CoA dehydrogenase-like  41.75 
 
 
595 aa  432  1e-120  Burkholderia cenocepacia AU 1054  Bacteria  normal  n/a   
 
 
-
 
NC_008836  BMA10229_A2330  acyl-CoA dehydrogenase domain-containing protein  41.34 
 
 
595 aa  434  1e-120  Burkholderia mallei NCTC 10229  Bacteria  normal  n/a   
 
 
-
 
NC_008785  BMASAVP1_A2748  acyl-CoA dehydrogenase domain-containing protein  41.34 
 
 
595 aa  434  1e-120  Burkholderia mallei SAVP1  Bacteria  normal  n/a   
 
 
-
 
NC_009080  BMA10247_2410  acyl-CoA dehydrogenase domain-containing protein  41.34 
 
 
595 aa  434  1e-120  Burkholderia mallei NCTC 10247  Bacteria  normal  n/a   
 
 
-
 
NC_010501  PputW619_4832  acyl-CoA dehydrogenase domain-containing protein  40.92 
 
 
592 aa  432  1e-120  Pseudomonas putida W619  Bacteria  normal  normal  0.946881 
 
 
-
 
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