More than 300 homologs were found in PanDaTox collection
for query gene TM1040_2796 on replicon NC_008044
Organism: Ruegeria sp. TM1040



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_008044  TM1040_2796  butyryl-CoA dehydrogenase  100 
 
 
399 aa  827    Ruegeria sp. TM1040  Bacteria  normal  normal  0.262809 
 
 
-
 
NC_009636  Smed_2175  acyl-CoA dehydrogenase domain-containing protein  64.51 
 
 
386 aa  520  1e-146  Sinorhizobium medicae WSM419  Bacteria  normal  normal 
 
 
-
 
NC_012854  Rleg_6429  Butyryl-CoA dehydrogenase  63.21 
 
 
386 aa  507  9.999999999999999e-143  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal  0.121067 
 
 
-
 
NC_011368  Rleg2_4494  acyl-CoA dehydrogenase domain protein  62.76 
 
 
386 aa  506  9.999999999999999e-143  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.211283  normal 
 
 
-
 
NC_007802  Jann_3822  acyl-CoA dehydrogenase-like  61.56 
 
 
386 aa  492  9.999999999999999e-139  Jannaschia sp. CCS1  Bacteria  normal  normal 
 
 
-
 
NC_009656  PSPA7_5712  putative acyl-CoA dehydrogenase  58.38 
 
 
386 aa  459  9.999999999999999e-129  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_010322  PputGB1_2181  acyl-CoA dehydrogenase domain-containing protein  57.81 
 
 
386 aa  459  9.999999999999999e-129  Pseudomonas putida GB-1  Bacteria  normal  0.326272  normal 
 
 
-
 
NC_008463  PA14_65820  putative acyl-CoA dehydrogenase  58.38 
 
 
386 aa  459  9.999999999999999e-129  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal 
 
 
-
 
NC_002947  PP_3725  acyl-CoA dehydrogenase domain-containing protein  57.55 
 
 
386 aa  457  1e-127  Pseudomonas putida KT2440  Bacteria  normal  normal 
 
 
-
 
NC_009512  Pput_2038  acyl-CoA dehydrogenase domain-containing protein  57.55 
 
 
386 aa  457  1e-127  Pseudomonas putida F1  Bacteria  normal  normal 
 
 
-
 
NC_010524  Lcho_1213  acyl-CoA dehydrogenase domain-containing protein  41.88 
 
 
386 aa  286  2.9999999999999996e-76  Leptothrix cholodnii SP-6  Bacteria  n/a    normal 
 
 
-
 
NC_013743  Htur_2326  acyl-CoA dehydrogenase domain protein  38.85 
 
 
398 aa  286  5.999999999999999e-76  Haloterrigena turkmenica DSM 5511  Archaea  n/a    n/a   
 
 
-
 
NC_008781  Pnap_2701  acyl-CoA dehydrogenase domain-containing protein  41.36 
 
 
386 aa  283  4.0000000000000003e-75  Polaromonas naphthalenivorans CJ2  Bacteria  normal  0.47386  normal 
 
 
-
 
NC_013922  Nmag_3415  acyl-CoA dehydrogenase domain protein  38.55 
 
 
414 aa  279  7e-74  Natrialba magadii ATCC 43099  Archaea  normal  n/a   
 
 
-
 
NC_013093  Amir_1569  acyl-CoA dehydrogenase domain protein  41.18 
 
 
389 aa  279  8e-74  Actinosynnema mirum DSM 43827  Bacteria  normal  0.881248  n/a   
 
 
-
 
NC_009767  Rcas_1109  acyl-CoA dehydrogenase domain-containing protein  38.72 
 
 
388 aa  277  3e-73  Roseiflexus castenholzii DSM 13941  Bacteria  normal  0.168915  normal 
 
 
-
 
NC_009523  RoseRS_3775  acyl-CoA dehydrogenase domain-containing protein  38.72 
 
 
388 aa  276  4e-73  Roseiflexus sp. RS-1  Bacteria  normal  0.0119178  unclonable  0.00000752707 
 
 
-
 
NC_013411  GYMC61_2494  Butyryl-CoA dehydrogenase  41.12 
 
 
392 aa  273  5.000000000000001e-72  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_011772  BCG9842_B5488  acyl-CoA dehydrogenase  39.28 
 
 
379 aa  271  1e-71  Bacillus cereus G9842  Bacteria  normal  0.270181  hitchhiker  1.62736e-22 
 
 
-
 
NC_013411  GYMC61_2439  acyl-CoA dehydrogenase domain protein  40.78 
 
 
380 aa  271  1e-71  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_011725  BCB4264_A5464  acyl-CoA dehydrogenase  39.28 
 
 
379 aa  271  2e-71  Bacillus cereus B4264  Bacteria  unclonable  0.0000608426  n/a   
 
 
-
 
NC_012793  GWCH70_1843  acyl-CoA dehydrogenase domain protein  40.31 
 
 
380 aa  269  8e-71  Geobacillus sp. WCH70  Bacteria  normal  n/a   
 
 
-
 
NC_007333  Tfu_1999  acyl-CoA dehydrogenase  39.49 
 
 
391 aa  267  2e-70  Thermobifida fusca YX  Bacteria  normal  0.0248728  n/a   
 
 
-
 
NC_009674  Bcer98_3863  acyl-CoA dehydrogenase domain-containing protein  41.24 
 
 
376 aa  267  2e-70  Bacillus cytotoxicus NVH 391-98  Bacteria  normal  n/a   
 
 
-
 
NC_011658  BCAH187_A5519  acyl-CoA dehydrogenase  39.02 
 
 
379 aa  267  2e-70  Bacillus cereus AH187  Bacteria  normal  0.814074  n/a   
 
 
-
 
NC_013159  Svir_33210  acyl-CoA dehydrogenase  39.39 
 
 
389 aa  267  2e-70  Saccharomonospora viridis DSM 43017  Bacteria  normal  0.243663  normal  0.754036 
 
 
-
 
NC_003909  BCE_5472  acyl-CoA dehydrogenase  39.02 
 
 
379 aa  267  2.9999999999999995e-70  Bacillus cereus ATCC 10987  Bacteria  normal  n/a   
 
 
-
 
NC_013440  Hoch_3778  acyl-CoA dehydrogenase domain protein  39.13 
 
 
382 aa  267  2.9999999999999995e-70  Haliangium ochraceum DSM 14365  Bacteria  normal  0.341587  normal  0.271407 
 
 
-
 
NC_011662  Tmz1t_0733  acyl-CoA dehydrogenase domain protein  39.9 
 
 
377 aa  266  2.9999999999999995e-70  Thauera sp. MZ1T  Bacteria  normal  n/a   
 
 
-
 
NC_006274  BCZK5041  acyl-CoA dehydrogenase  38.76 
 
 
379 aa  266  5e-70  Bacillus cereus E33L  Bacteria  normal  n/a   
 
 
-
 
NC_010718  Nther_1881  butyryl-CoA dehydrogenase  38.24 
 
 
379 aa  266  5.999999999999999e-70  Natranaerobius thermophilus JW/NM-WN-LF  Bacteria  normal  0.593492  normal  0.222475 
 
 
-
 
NC_011831  Cagg_2382  acyl-CoA dehydrogenase domain protein  38.86 
 
 
389 aa  265  8.999999999999999e-70  Chloroflexus aggregans DSM 9485  Bacteria  normal  normal 
 
 
-
 
NC_012793  GWCH70_3341  acyl-CoA dehydrogenase domain protein  40 
 
 
379 aa  265  1e-69  Geobacillus sp. WCH70  Bacteria  normal  n/a   
 
 
-
 
NC_005945  BAS5190  acyl-CoA dehydrogenase  38.5 
 
 
379 aa  264  2e-69  Bacillus anthracis str. Sterne  Bacteria  normal  n/a   
 
 
-
 
NC_007530  GBAA_5586  acyl-CoA dehydrogenase  38.5 
 
 
379 aa  264  2e-69  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  n/a   
 
 
-
 
NC_011773  BCAH820_5434  acyl-CoA dehydrogenase  38.5 
 
 
379 aa  264  2e-69  Bacillus cereus AH820  Bacteria  n/a    hitchhiker  0.0000000000000286159 
 
 
-
 
NC_010184  BcerKBAB4_5139  acyl-CoA dehydrogenase domain-containing protein  38.76 
 
 
379 aa  263  3e-69  Bacillus weihenstephanensis KBAB4  Bacteria  normal  n/a   
 
 
-
 
NC_013205  Aaci_2056  acyl-CoA dehydrogenase domain protein  40 
 
 
377 aa  263  3e-69  Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria  normal  0.232194  n/a   
 
 
-
 
NC_005957  BT9727_5025  butyryl-CoA dehydrogenase (short-chain acyl-CoA dehydrogenase)  38.5 
 
 
379 aa  263  4e-69  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  normal  n/a   
 
 
-
 
NC_009441  Fjoh_1932  acyl-CoA dehydrogenase domain-containing protein  37.73 
 
 
380 aa  263  4e-69  Flavobacterium johnsoniae UW101  Bacteria  normal  n/a   
 
 
-
 
NC_008025  Dgeo_0736  acyl-CoA dehydrogenase-like protein  36.95 
 
 
379 aa  263  4e-69  Deinococcus geothermalis DSM 11300  Bacteria  normal  normal  0.763418 
 
 
-
 
NC_009674  Bcer98_3862  acyl-CoA dehydrogenase domain-containing protein  38.76 
 
 
379 aa  262  6e-69  Bacillus cytotoxicus NVH 391-98  Bacteria  normal  n/a   
 
 
-
 
NC_013411  GYMC61_3450  acyl-CoA dehydrogenase domain protein  40 
 
 
380 aa  262  6e-69  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_008699  Noca_0046  acyl-CoA dehydrogenase domain-containing protein  38.89 
 
 
387 aa  263  6e-69  Nocardioides sp. JS614  Bacteria  normal  n/a   
 
 
-
 
NC_011831  Cagg_0397  acyl-CoA dehydrogenase domain protein  40.05 
 
 
379 aa  262  8e-69  Chloroflexus aggregans DSM 9485  Bacteria  normal  normal  0.362138 
 
 
-
 
NC_008554  Sfum_3931  acyl-CoA dehydrogenase domain-containing protein  37.63 
 
 
400 aa  260  2e-68  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  normal  0.543045 
 
 
-
 
NC_011830  Dhaf_2863  acyl-CoA dehydrogenase domain protein  38.7 
 
 
380 aa  260  3e-68  Desulfitobacterium hafniense DCB-2  Bacteria  normal  n/a   
 
 
-
 
NC_013131  Caci_7442  acyl-CoA dehydrogenase domain protein  41.53 
 
 
417 aa  259  8e-68  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_012793  GWCH70_3342  acyl-CoA dehydrogenase domain protein  38.05 
 
 
379 aa  258  2e-67  Geobacillus sp. WCH70  Bacteria  normal  n/a   
 
 
-
 
NC_014165  Tbis_1804  butyryl-CoA dehydrogenase  39.9 
 
 
386 aa  257  2e-67  Thermobispora bispora DSM 43833  Bacteria  normal  normal 
 
 
-
 
NC_013739  Cwoe_0410  acyl-CoA dehydrogenase domain protein  40.41 
 
 
389 aa  258  2e-67  Conexibacter woesei DSM 14684  Bacteria  normal  normal  0.436291 
 
 
-
 
NC_014210  Ndas_1118  acyl-CoA dehydrogenase domain protein  37.47 
 
 
391 aa  256  5e-67  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  normal  0.549204 
 
 
-
 
NC_008025  Dgeo_1179  acyl-CoA dehydrogenase-like protein  38.97 
 
 
392 aa  255  7e-67  Deinococcus geothermalis DSM 11300  Bacteria  normal  normal 
 
 
-
 
NC_008243  Meso_4475  acyl-CoA dehydrogenase-like  38.9 
 
 
381 aa  256  7e-67  Chelativorans sp. BNC1  Bacteria  normal  n/a   
 
 
-
 
NC_013131  Caci_7441  acyl-CoA dehydrogenase domain protein  38.96 
 
 
388 aa  255  9e-67  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_013922  Nmag_3108  acyl-CoA dehydrogenase domain protein  37.4 
 
 
383 aa  254  1.0000000000000001e-66  Natrialba magadii ATCC 43099  Archaea  normal  n/a   
 
 
-
 
NC_008009  Acid345_2369  acyl-CoA dehydrogenase-like  37.89 
 
 
380 aa  253  3e-66  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  normal 
 
 
-
 
NC_013743  Htur_0919  acyl-CoA dehydrogenase domain protein  37.14 
 
 
383 aa  253  4.0000000000000004e-66  Haloterrigena turkmenica DSM 5511  Archaea  n/a    n/a   
 
 
-
 
NC_009523  RoseRS_4146  acyl-CoA dehydrogenase domain-containing protein  38.18 
 
 
394 aa  253  5.000000000000001e-66  Roseiflexus sp. RS-1  Bacteria  normal  0.954368  normal 
 
 
-
 
NC_011658  BCAH187_A5520  acyl-CoA dehydrogenase  37.79 
 
 
381 aa  251  1e-65  Bacillus cereus AH187  Bacteria  normal  n/a   
 
 
-
 
NC_007298  Daro_0096  Acyl-CoA dehydrogenase, C-terminal:Acyl-CoA dehydrogenase, central region:Acyl-CoA dehydrogenase, N-terminal  39.43 
 
 
378 aa  252  1e-65  Dechloromonas aromatica RCB  Bacteria  normal  0.0160842  normal 
 
 
-
 
NC_009718  Fnod_0585  acyl-CoA dehydrogenase domain-containing protein  36.29 
 
 
379 aa  251  1e-65  Fervidobacterium nodosum Rt17-B1  Bacteria  normal  n/a   
 
 
-
 
NC_013730  Slin_3527  acyl-CoA dehydrogenase domain protein  39.01 
 
 
386 aa  251  1e-65  Spirosoma linguale DSM 74  Bacteria  normal  0.496474  normal 
 
 
-
 
NC_010184  BcerKBAB4_2355  acyl-CoA dehydrogenase domain-containing protein  37.73 
 
 
381 aa  251  2e-65  Bacillus weihenstephanensis KBAB4  Bacteria  normal  0.774843  n/a   
 
 
-
 
NC_003909  BCE_5473  acyl-CoA dehydrogenase  37.73 
 
 
376 aa  249  4e-65  Bacillus cereus ATCC 10987  Bacteria  normal  n/a   
 
 
-
 
NC_008786  Veis_2517  acyl-CoA dehydrogenase domain-containing protein  39.3 
 
 
395 aa  249  4e-65  Verminephrobacter eiseniae EF01-2  Bacteria  normal  normal 
 
 
-
 
NC_011725  BCB4264_A5465  acyl-CoA dehydrogenase  37.53 
 
 
381 aa  249  6e-65  Bacillus cereus B4264  Bacteria  hitchhiker  0.000680329  n/a   
 
 
-
 
NC_009767  Rcas_0583  acyl-CoA dehydrogenase domain-containing protein  37.92 
 
 
379 aa  249  6e-65  Roseiflexus castenholzii DSM 13941  Bacteria  normal  normal  0.394739 
 
 
-
 
NC_009674  Bcer98_1802  acyl-CoA dehydrogenase domain-containing protein  37.21 
 
 
381 aa  249  9e-65  Bacillus cytotoxicus NVH 391-98  Bacteria  normal  n/a   
 
 
-
 
NC_005957  BT9727_5026  short-chain acyl-CoA dehydrogenase; butyryl-CoA dehydrogenase  37.47 
 
 
376 aa  248  1e-64  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  normal  n/a   
 
 
-
 
NC_011773  BCAH820_5435  acyl-CoA dehydrogenase  37.47 
 
 
376 aa  248  1e-64  Bacillus cereus AH820  Bacteria  n/a    hitchhiker  0.000000000529924 
 
 
-
 
NC_005945  BAS5191  acyl-CoA dehydrogenase  36.95 
 
 
376 aa  247  2e-64  Bacillus anthracis str. Sterne  Bacteria  normal  n/a   
 
 
-
 
NC_006274  BCZK5042  short-chain acyl-CoA dehydrogenase; butyryl-CoA dehydrogenase  37.47 
 
 
376 aa  248  2e-64  Bacillus cereus E33L  Bacteria  normal  n/a   
 
 
-
 
NC_011772  BCG9842_B2812  acyl-CoA dehydrogenase  37.21 
 
 
381 aa  247  2e-64  Bacillus cereus G9842  Bacteria  normal  hitchhiker  0.000163693 
 
 
-
 
NC_013132  Cpin_1288  acyl-CoA dehydrogenase domain protein  37.89 
 
 
379 aa  248  2e-64  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal  0.751821 
 
 
-
 
NC_013061  Phep_0136  acyl-CoA dehydrogenase domain protein  37.92 
 
 
379 aa  247  2e-64  Pedobacter heparinus DSM 2366  Bacteria  normal  normal 
 
 
-
 
NC_007530  GBAA_5587  acyl-CoA dehydrogenase  36.95 
 
 
376 aa  247  2e-64  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  n/a   
 
 
-
 
NC_009972  Haur_4391  acyl-CoA dehydrogenase domain-containing protein  36.79 
 
 
386 aa  248  2e-64  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  n/a   
 
 
-
 
NC_011725  BCB4264_A2511  acyl-CoA dehydrogenase  37.21 
 
 
381 aa  247  2e-64  Bacillus cereus B4264  Bacteria  normal  n/a   
 
 
-
 
NC_011772  BCG9842_B5487  acyl-CoA dehydrogenase  37.28 
 
 
381 aa  247  3e-64  Bacillus cereus G9842  Bacteria  normal  0.0302943  hitchhiker  1.44799e-22 
 
 
-
 
NC_003909  BCE_2548  acyl-CoA dehydrogenase  37.21 
 
 
381 aa  247  3e-64  Bacillus cereus ATCC 10987  Bacteria  normal  0.438014  n/a   
 
 
-
 
NC_006274  BCZK2285  acyl-CoA dehydrogenase  37.21 
 
 
381 aa  247  3e-64  Bacillus cereus E33L  Bacteria  normal  0.769883  n/a   
 
 
-
 
NC_011658  BCAH187_A2603  acyl-CoA dehydrogenase  37.21 
 
 
381 aa  247  3e-64  Bacillus cereus AH187  Bacteria  normal  0.608519  n/a   
 
 
-
 
NC_013171  Apre_1356  acyl-CoA dehydrogenase domain protein  37.21 
 
 
379 aa  246  4e-64  Anaerococcus prevotii DSM 20548  Bacteria  unclonable  0.00000000100384  n/a   
 
 
-
 
NC_005945  BAS2369  acyl-CoA dehydrogenase  37.21 
 
 
381 aa  246  4.9999999999999997e-64  Bacillus anthracis str. Sterne  Bacteria  normal  0.73982  n/a   
 
 
-
 
NC_013162  Coch_0730  acyl-CoA dehydrogenase domain protein  35.84 
 
 
381 aa  246  6.999999999999999e-64  Capnocytophaga ochracea DSM 7271  Bacteria  normal  n/a   
 
 
-
 
NC_013739  Cwoe_1590  acyl-CoA dehydrogenase domain protein  37.92 
 
 
396 aa  245  8e-64  Conexibacter woesei DSM 14684  Bacteria  normal  normal  0.663907 
 
 
-
 
NC_007530  GBAA_2547  acyl-CoA dehydrogenase  36.95 
 
 
381 aa  245  9.999999999999999e-64  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  n/a   
 
 
-
 
NC_009616  Tmel_0656  acyl-CoA dehydrogenase domain-containing protein  34.7 
 
 
380 aa  245  9.999999999999999e-64  Thermosipho melanesiensis BI429  Bacteria  normal  n/a   
 
 
-
 
NC_013739  Cwoe_0232  acyl-CoA dehydrogenase domain protein  37.21 
 
 
382 aa  244  1.9999999999999999e-63  Conexibacter woesei DSM 14684  Bacteria  normal  normal  0.359869 
 
 
-
 
NC_008261  CPF_2584  butyryl-CoA dehydrogenase  35.22 
 
 
379 aa  244  1.9999999999999999e-63  Clostridium perfringens ATCC 13124  Bacteria  normal  n/a   
 
 
-
 
NC_008262  CPR_2286  butyryl-CoA dehydrogenase  35.22 
 
 
379 aa  244  1.9999999999999999e-63  Clostridium perfringens SM101  Bacteria  normal  n/a   
 
 
-
 
NC_011145  AnaeK_2192  acyl-CoA dehydrogenase domain protein  39.43 
 
 
380 aa  244  3e-63  Anaeromyxobacter sp. K  Bacteria  normal  0.516178  n/a   
 
 
-
 
NC_005957  BT9727_2327  acyl-CoA dehydrogenase  36.95 
 
 
381 aa  243  3.9999999999999997e-63  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  normal  n/a   
 
 
-
 
NC_007517  Gmet_1710  Acyl-CoA dehydrogenase-like  39.13 
 
 
386 aa  243  3.9999999999999997e-63  Geobacter metallireducens GS-15  Bacteria  normal  normal  0.671564 
 
 
-
 
NC_011773  BCAH820_2560  acyl-CoA dehydrogenase  36.95 
 
 
381 aa  243  3.9999999999999997e-63  Bacillus cereus AH820  Bacteria  n/a    hitchhiker  4.1486499999999994e-20 
 
 
-
 
NC_009253  Dred_1782  butyryl-CoA dehydrogenase  37.47 
 
 
379 aa  243  3.9999999999999997e-63  Desulfotomaculum reducens MI-1  Bacteria  normal  0.257154  n/a   
 
 
-
 
NC_010184  BcerKBAB4_5140  acyl-CoA dehydrogenase domain-containing protein  37.21 
 
 
376 aa  243  5e-63  Bacillus weihenstephanensis KBAB4  Bacteria  normal  n/a   
 
 
-
 
NC_013216  Dtox_1697  acyl-CoA dehydrogenase domain protein  39.22 
 
 
386 aa  243  5e-63  Desulfotomaculum acetoxidans DSM 771  Bacteria  normal  0.0868604  normal 
 
 
-
 
NC_011891  A2cp1_2281  acyl-CoA dehydrogenase domain protein  38.9 
 
 
380 aa  242  1e-62  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  n/a   
 
 
-
 
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