More than 300 homologs were found in PanDaTox collection
for query gene TM1040_2420 on replicon NC_008044
Organism: Ruegeria sp. TM1040



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_008044  TM1040_2420  binding-protein-dependent transport systems inner membrane component  100 
 
 
265 aa  530  1e-150  Ruegeria sp. TM1040  Bacteria  normal  0.0828687  normal  0.714962 
 
 
-
 
NC_009952  Dshi_3131  sugar ABC transporter  87.92 
 
 
265 aa  481  1e-135  Dinoroseobacter shibae DFL 12  Bacteria  normal  0.471841  normal 
 
 
-
 
NC_009636  Smed_2907  binding-protein-dependent transport systems inner membrane component  79.25 
 
 
274 aa  431  1e-120  Sinorhizobium medicae WSM419  Bacteria  normal  0.395793  normal 
 
 
-
 
NC_007492  Pfl01_3632  binding-protein dependent transport system inner membrane protein  75.56 
 
 
266 aa  428  1e-119  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal  0.469815 
 
 
-
 
NC_008687  Pden_4389  binding-protein-dependent transport systems inner membrane component  75.47 
 
 
267 aa  426  1e-118  Paracoccus denitrificans PD1222  Bacteria  normal  0.998448  normal  0.127678 
 
 
-
 
NC_004578  PSPTO_3737  ABC transporter, permease protein  74.81 
 
 
266 aa  421  1e-117  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.103253  n/a   
 
 
-
 
NC_007493  RSP_2665  ABC sugar (glycerol) transporter, inner membrane subunit  75.86 
 
 
267 aa  422  1e-117  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  n/a   
 
 
-
 
NC_009049  Rsph17029_1323  binding-protein-dependent transport systems inner membrane component  75.48 
 
 
267 aa  422  1e-117  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  normal 
 
 
-
 
NC_009439  Pmen_2045  binding-protein-dependent transport systems inner membrane component  73.58 
 
 
266 aa  421  1e-117  Pseudomonas mendocina ymp  Bacteria  normal  0.0321729  normal  0.632864 
 
 
-
 
NC_003295  RSc3049  transmembrane ABC transporter protein  75.57 
 
 
276 aa  420  1e-116  Ralstonia solanacearum GMI1000  Bacteria  normal  normal  0.0698875 
 
 
-
 
NC_011992  Dtpsy_0379  binding-protein-dependent transport systems inner membrane component  75.76 
 
 
270 aa  418  1e-116  Acidovorax ebreus TPSY  Bacteria  hitchhiker  0.000739004  n/a   
 
 
-
 
NC_012856  Rpic12D_2984  binding-protein-dependent transport systems inner membrane component  74.43 
 
 
276 aa  417  1e-116  Ralstonia pickettii 12D  Bacteria  normal  normal 
 
 
-
 
NC_007005  Psyr_1740  binding-protein dependent transport system inner membrane protein  74.44 
 
 
266 aa  419  1e-116  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  0.139142  normal  0.986821 
 
 
-
 
NC_007948  Bpro_0481  binding-protein-dependent transport systems inner membrane component  76.52 
 
 
270 aa  419  1e-116  Polaromonas sp. JS666  Bacteria  hitchhiker  0.00885853  normal 
 
 
-
 
NC_009668  Oant_3980  binding-protein-dependent transport systems inner membrane component  76.15 
 
 
296 aa  420  1e-116  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  0.780875  n/a   
 
 
-
 
NC_010002  Daci_1028  binding-protein-dependent transport systems inner membrane component  75.38 
 
 
271 aa  417  1e-116  Delftia acidovorans SPH-1  Bacteria  normal  normal 
 
 
-
 
NC_008782  Ajs_0387  binding-protein-dependent transport systems inner membrane component  75.76 
 
 
270 aa  419  1e-116  Acidovorax sp. JS42  Bacteria  normal  0.579392  normal 
 
 
-
 
NC_010682  Rpic_3331  binding-protein-dependent transport systems inner membrane component  74.43 
 
 
277 aa  417  1e-116  Ralstonia pickettii 12J  Bacteria  normal  normal  0.619722 
 
 
-
 
NC_007908  Rfer_3673  binding-protein-dependent transport systems inner membrane component  75.38 
 
 
270 aa  414  9.999999999999999e-116  Rhodoferax ferrireducens T118  Bacteria  normal  0.0159617  n/a   
 
 
-
 
NC_008752  Aave_0607  binding-protein-dependent transport systems inner membrane component  74.62 
 
 
270 aa  414  9.999999999999999e-116  Acidovorax citrulli AAC00-1  Bacteria  normal  normal 
 
 
-
 
NC_009428  Rsph17025_1204  binding-protein-dependent transport systems inner membrane component  74.33 
 
 
267 aa  416  9.999999999999999e-116  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  0.286919  normal  0.719506 
 
 
-
 
NC_007802  Jann_4101  binding-protein-dependent transport systems inner membrane component  74.34 
 
 
274 aa  413  1e-114  Jannaschia sp. CCS1  Bacteria  normal  0.612527  normal  0.65761 
 
 
-
 
NC_011004  Rpal_4891  binding-protein-dependent transport systems inner membrane component  75.95 
 
 
268 aa  411  1e-114  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_007778  RPB_4213  binding-protein-dependent transport systems inner membrane component  75.19 
 
 
268 aa  409  1e-113  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal  0.586864 
 
 
-
 
NC_007958  RPD_4065  binding-protein-dependent transport systems inner membrane component  75.19 
 
 
268 aa  409  1e-113  Rhodopseudomonas palustris BisB5  Bacteria  normal  normal  0.641778 
 
 
-
 
NC_008786  Veis_2319  binding-protein-dependent transport systems inner membrane component  73.96 
 
 
270 aa  410  1e-113  Verminephrobacter eiseniae EF01-2  Bacteria  normal  0.170215  normal  0.495822 
 
 
-
 
NC_010676  Bphyt_6726  binding-protein-dependent transport systems inner membrane component  73.66 
 
 
269 aa  410  1e-113  Burkholderia phytofirmans PsJN  Bacteria  normal  normal 
 
 
-
 
NC_002947  PP_2263  binding-protein-dependent transport systems inner membrane component  73 
 
 
266 aa  404  1.0000000000000001e-112  Pseudomonas putida KT2440  Bacteria  normal  decreased coverage  0.000192828 
 
 
-
 
NC_007347  Reut_A2206  binding-protein dependent transport system inner membrane protein  75.49 
 
 
273 aa  407  1.0000000000000001e-112  Ralstonia eutropha JMP134  Bacteria  normal  0.91702  n/a   
 
 
-
 
NC_010511  M446_1971  binding-protein-dependent transport systems inner membrane component  72.83 
 
 
265 aa  405  1.0000000000000001e-112  Methylobacterium sp. 4-46  Bacteria  normal  normal 
 
 
-
 
NC_010501  PputW619_1736  binding-protein-dependent transport systems inner membrane component  75.9 
 
 
266 aa  405  1.0000000000000001e-112  Pseudomonas putida W619  Bacteria  normal  0.78404  normal  0.23922 
 
 
-
 
NC_007973  Rmet_2231  binding-protein-dependent transport systems inner membrane component  74.05 
 
 
276 aa  406  1.0000000000000001e-112  Cupriavidus metallidurans CH34  Bacteria  normal  0.0964612  normal  0.170787 
 
 
-
 
NC_008709  Ping_3171  ABC sugar (glycerol) transporter binding protein inner membrane protein  70.83 
 
 
266 aa  404  1.0000000000000001e-112  Psychromonas ingrahamii 37  Bacteria  normal  0.550599  normal 
 
 
-
 
NC_009512  Pput_3475  binding-protein-dependent transport systems inner membrane component  73 
 
 
266 aa  404  1.0000000000000001e-112  Pseudomonas putida F1  Bacteria  normal  0.926994  hitchhiker  0.00696056 
 
 
-
 
NC_010623  Bphy_5370  binding-protein-dependent transport systems inner membrane component  72.9 
 
 
270 aa  406  1.0000000000000001e-112  Burkholderia phymatum STM815  Bacteria  normal  normal  0.593461 
 
 
-
 
NC_009654  Mmwyl1_0377  binding-protein-dependent transport systems inner membrane component  75.81 
 
 
297 aa  406  1.0000000000000001e-112  Marinomonas sp. MWYL1  Bacteria  normal  0.135278  normal  0.390253 
 
 
-
 
NC_012791  Vapar_3393  binding-protein-dependent transport systems inner membrane component  76.14 
 
 
270 aa  402  1e-111  Variovorax paradoxus S110  Bacteria  normal  0.0838291  n/a   
 
 
-
 
NC_010322  PputGB1_1896  binding-protein-dependent transport systems inner membrane component  75.5 
 
 
266 aa  402  1e-111  Pseudomonas putida GB-1  Bacteria  normal  normal  0.141997 
 
 
-
 
NC_008254  Meso_1595  binding-protein-dependent transport systems inner membrane component  80.38 
 
 
272 aa  398  9.999999999999999e-111  Chelativorans sp. BNC1  Bacteria  normal  n/a   
 
 
-
 
NC_009485  BBta_2225  putative sugar ABC transport system, permease component  72.9 
 
 
268 aa  398  9.999999999999999e-111  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.279383  normal  0.0771654 
 
 
-
 
NC_013440  Hoch_5934  binding-protein-dependent transport systems inner membrane component  73.38 
 
 
272 aa  394  1e-109  Haliangium ochraceum DSM 14365  Bacteria  normal  0.0836514  normal 
 
 
-
 
NC_012852  Rleg_5979  binding-protein-dependent transport systems inner membrane component  75.38 
 
 
303 aa  393  1e-108  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal 
 
 
-
 
NC_007925  RPC_1365  binding-protein-dependent transport systems inner membrane component  75.81 
 
 
275 aa  392  1e-108  Rhodopseudomonas palustris BisB18  Bacteria  normal  0.374311  normal 
 
 
-
 
NC_011371  Rleg2_6466  binding-protein-dependent transport systems inner membrane component  75 
 
 
303 aa  390  1e-107  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal 
 
 
-
 
NC_011989  Avi_0098  ABC transporter membrane spanning protein (sugar)  77.59 
 
 
241 aa  390  1e-107  Agrobacterium vitis S4  Bacteria  normal  0.152339  n/a   
 
 
-
 
NC_013173  Dbac_1443  binding-protein-dependent transport systems inner membrane component  70.57 
 
 
265 aa  382  1e-105  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  0.0301431  n/a   
 
 
-
 
NC_007963  Csal_2091  binding-protein-dependent transport systems inner membrane component  70.08 
 
 
258 aa  381  1e-105  Chromohalobacter salexigens DSM 3043  Bacteria  normal  0.322391  n/a   
 
 
-
 
NC_013223  Dret_2097  binding-protein-dependent transport systems inner membrane component  59.25 
 
 
265 aa  336  2.9999999999999997e-91  Desulfohalobium retbaense DSM 5692  Bacteria  normal  normal  0.0908154 
 
 
-
 
NC_007802  Jann_4107  binding-protein-dependent transport systems inner membrane component  43.18 
 
 
261 aa  200  1.9999999999999998e-50  Jannaschia sp. CCS1  Bacteria  normal  normal 
 
 
-
 
NC_009429  Rsph17025_3582  hypothetical protein  36.12 
 
 
278 aa  170  2e-41  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  0.928396  normal  0.804079 
 
 
-
 
NC_013526  Tter_2053  binding-protein-dependent transport systems inner membrane component  35.71 
 
 
285 aa  154  1e-36  Thermobaculum terrenum ATCC BAA-798  Bacteria  normal  n/a   
 
 
-
 
NC_012850  Rleg_0285  binding-protein-dependent transport systems inner membrane component  35.16 
 
 
279 aa  152  4e-36  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.424252  normal 
 
 
-
 
NC_011369  Rleg2_0256  binding-protein-dependent transport systems inner membrane component  35.16 
 
 
278 aa  152  8e-36  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal 
 
 
-
 
NC_009636  Smed_2697  binding-protein-dependent transport systems inner membrane component  38 
 
 
293 aa  147  2.0000000000000003e-34  Sinorhizobium medicae WSM419  Bacteria  normal  normal 
 
 
-
 
NC_009952  Dshi_0549  ABC-type sugar / sn-glycerol-3-phosphate transport system permease protein ugpE  34.36 
 
 
272 aa  144  2e-33  Dinoroseobacter shibae DFL 12  Bacteria  normal  normal 
 
 
-
 
NC_010003  Pmob_0307  binding-protein-dependent transport systems inner membrane component  28.96 
 
 
274 aa  142  4e-33  Petrotoga mobilis SJ95  Bacteria  normal  n/a   
 
 
-
 
NC_013526  Tter_2490  binding-protein-dependent transport systems inner membrane component  32.84 
 
 
279 aa  143  4e-33  Thermobaculum terrenum ATCC BAA-798  Bacteria  normal  0.961495  n/a   
 
 
-
 
NC_014212  Mesil_3058  binding-protein-dependent transport systems inner membrane component  33.98 
 
 
286 aa  142  7e-33  Meiothermus silvanus DSM 9946  Bacteria  normal  normal 
 
 
-
 
NC_009636  Smed_0188  binding-protein-dependent transport systems inner membrane component  32.56 
 
 
277 aa  141  9e-33  Sinorhizobium medicae WSM419  Bacteria  normal  normal 
 
 
-
 
NC_008043  TM1040_3397  binding-protein-dependent transport systems inner membrane component  31.4 
 
 
287 aa  140  9.999999999999999e-33  Ruegeria sp. TM1040  Bacteria  normal  0.141396  normal  0.659935 
 
 
-
 
NC_007963  Csal_2612  binding-protein-dependent transport systems inner membrane component  31.62 
 
 
276 aa  140  1.9999999999999998e-32  Chromohalobacter salexigens DSM 3043  Bacteria  normal  n/a   
 
 
-
 
NC_009952  Dshi_3142  sugar ABC transporter  32.95 
 
 
275 aa  140  1.9999999999999998e-32  Dinoroseobacter shibae DFL 12  Bacteria  normal  0.367291  normal 
 
 
-
 
NC_013595  Sros_3493  binding-protein-dependent transport systems inner membrane component  29.62 
 
 
316 aa  138  7e-32  Streptosporangium roseum DSM 43021  Bacteria  normal  normal  0.552575 
 
 
-
 
NC_008786  Veis_2013  binding-protein-dependent transport systems inner membrane component  29.92 
 
 
285 aa  135  8e-31  Verminephrobacter eiseniae EF01-2  Bacteria  normal  0.81  normal  0.395958 
 
 
-
 
NC_012848  Rleg_4709  binding-protein-dependent transport systems inner membrane component  32.17 
 
 
278 aa  134  9.999999999999999e-31  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal 
 
 
-
 
NC_009621  Smed_5860  binding-protein-dependent transport systems inner membrane component  34.31 
 
 
319 aa  134  9.999999999999999e-31  Sinorhizobium medicae WSM419  Bacteria  normal  0.235146  normal 
 
 
-
 
NC_007802  Jann_4088  binding-protein-dependent transport systems inner membrane component  32.33 
 
 
275 aa  133  1.9999999999999998e-30  Jannaschia sp. CCS1  Bacteria  normal  normal  0.350213 
 
 
-
 
NC_009636  Smed_2454  binding-protein-dependent transport systems inner membrane component  31.56 
 
 
286 aa  134  1.9999999999999998e-30  Sinorhizobium medicae WSM419  Bacteria  normal  normal 
 
 
-
 
NC_007908  Rfer_0952  binding-protein-dependent transport systems inner membrane component  30.04 
 
 
271 aa  133  3e-30  Rhodoferax ferrireducens T118  Bacteria  normal  n/a   
 
 
-
 
NC_007948  Bpro_0701  binding-protein-dependent transport systems inner membrane component  32.58 
 
 
315 aa  133  3e-30  Polaromonas sp. JS666  Bacteria  normal  0.338666  normal 
 
 
-
 
NC_009620  Smed_4977  binding-protein-dependent transport systems inner membrane component  29.46 
 
 
288 aa  133  3.9999999999999996e-30  Sinorhizobium medicae WSM419  Bacteria  normal  normal  0.0547171 
 
 
-
 
NC_007484  Noc_0280  ABC transporter, inner membrane subunit  31.54 
 
 
280 aa  132  5e-30  Nitrosococcus oceani ATCC 19707  Bacteria  normal  0.787211  n/a   
 
 
-
 
NC_011886  Achl_2899  binding-protein-dependent transport systems inner membrane component  30.12 
 
 
316 aa  132  6e-30  Arthrobacter chlorophenolicus A6  Bacteria  n/a    normal 
 
 
-
 
NC_009921  Franean1_7051  binding-protein-dependent transport systems inner membrane component  31.73 
 
 
279 aa  132  6e-30  Frankia sp. EAN1pec  Bacteria  normal  0.305839  normal 
 
 
-
 
NC_012792  Vapar_5701  binding-protein-dependent transport systems inner membrane component  33.33 
 
 
278 aa  132  7.999999999999999e-30  Variovorax paradoxus S110  Bacteria  normal  n/a   
 
 
-
 
NC_008541  Arth_0050  binding-protein-dependent transport systems inner membrane component  31.11 
 
 
305 aa  132  7.999999999999999e-30  Arthrobacter sp. FB24  Bacteria  normal  n/a   
 
 
-
 
NC_012853  Rleg_5696  binding-protein-dependent transport systems inner membrane component  33.46 
 
 
283 aa  132  7.999999999999999e-30  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.697019  normal  0.0828938 
 
 
-
 
NC_004310  BR0237  sugar ABC transporter, permease protein  28.06 
 
 
291 aa  131  9e-30  Brucella suis 1330  Bacteria  normal  0.963709  n/a   
 
 
-
 
NC_009505  BOV_0230  sugar ABC transporter, permease protein  28.06 
 
 
291 aa  131  9e-30  Brucella ovis ATCC 25840  Bacteria  normal  n/a   
 
 
-
 
NC_012848  Rleg_4987  binding-protein-dependent transport systems inner membrane component  28.96 
 
 
319 aa  131  1.0000000000000001e-29  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal 
 
 
-
 
NC_008541  Arth_3685  binding-protein-dependent transport systems inner membrane component  30.98 
 
 
299 aa  130  2.0000000000000002e-29  Arthrobacter sp. FB24  Bacteria  normal  n/a   
 
 
-
 
NC_011899  Hore_03310  binding-protein-dependent transport systems inner membrane component  28.73 
 
 
288 aa  130  2.0000000000000002e-29  Halothermothrix orenii H 168  Bacteria  normal  n/a   
 
 
-
 
NC_011899  Hore_04600  binding-protein-dependent transport systems inner membrane component  28.09 
 
 
277 aa  130  2.0000000000000002e-29  Halothermothrix orenii H 168  Bacteria  normal  n/a   
 
 
-
 
NC_013526  Tter_2701  binding-protein-dependent transport systems inner membrane component  33.07 
 
 
275 aa  130  3e-29  Thermobaculum terrenum ATCC BAA-798  Bacteria  normal  0.0563997  n/a   
 
 
-
 
NC_009667  Oant_0311  binding-protein-dependent transport systems inner membrane component  29.73 
 
 
292 aa  130  3e-29  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  0.466995  n/a   
 
 
-
 
NC_009338  Mflv_3853  binding-protein-dependent transport systems inner membrane component  31.32 
 
 
275 aa  129  5.0000000000000004e-29  Mycobacterium gilvum PYR-GCK  Bacteria  normal  normal  0.0623628 
 
 
-
 
NC_009050  Rsph17029_3407  binding-protein-dependent transport systems inner membrane component  30.15 
 
 
277 aa  129  6e-29  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  0.353789  normal  0.790416 
 
 
-
 
NC_011899  Hore_00800  binding-protein-dependent transport systems inner membrane component  29.57 
 
 
280 aa  128  8.000000000000001e-29  Halothermothrix orenii H 168  Bacteria  normal  0.303025  n/a   
 
 
-
 
NC_011661  Dtur_1741  binding-protein-dependent transport systems inner membrane component  30.8 
 
 
281 aa  128  8.000000000000001e-29  Dictyoglomus turgidum DSM 6724  Bacteria  normal  n/a   
 
 
-
 
NC_008726  Mvan_2542  binding-protein-dependent transport systems inner membrane component  31.32 
 
 
275 aa  128  8.000000000000001e-29  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  0.607728  normal 
 
 
-
 
NC_007494  RSP_3672  ABC sugar transporter, inner membrane subunit  29.77 
 
 
277 aa  128  9.000000000000001e-29  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  0.191343  n/a   
 
 
-
 
NC_011661  Dtur_0489  binding-protein-dependent transport systems inner membrane component  30.51 
 
 
274 aa  127  1.0000000000000001e-28  Dictyoglomus turgidum DSM 6724  Bacteria  normal  n/a   
 
 
-
 
NC_010625  Bphy_6369  binding-protein-dependent transport systems inner membrane component  28.91 
 
 
317 aa  128  1.0000000000000001e-28  Burkholderia phymatum STM815  Bacteria  normal  0.568723  normal 
 
 
-
 
NC_013595  Sros_3341  putative sugar ABC transporter, permease protein  28.63 
 
 
292 aa  127  2.0000000000000002e-28  Streptosporangium roseum DSM 43021  Bacteria  normal  0.22127  normal  0.118781 
 
 
-
 
NC_008010  Dgeo_2818  binding-protein-dependent transport systems inner membrane component  30.31 
 
 
255 aa  127  2.0000000000000002e-28  Deinococcus geothermalis DSM 11300  Bacteria  normal  n/a   
 
 
-
 
NC_013745  Htur_4652  binding-protein-dependent transport systems inner membrane component  30.12 
 
 
292 aa  126  3e-28  Haloterrigena turkmenica DSM 5511  Archaea  normal  0.0409709  n/a   
 
 
-
 
NC_010003  Pmob_0029  binding-protein-dependent transport systems inner membrane component  30.68 
 
 
283 aa  124  1e-27  Petrotoga mobilis SJ95  Bacteria  unclonable  0.0000000511748  n/a   
 
 
-
 
NC_013159  Svir_06510  carbohydrate ABC transporter membrane protein  31.44 
 
 
282 aa  124  1e-27  Saccharomonospora viridis DSM 43017  Bacteria  normal  normal 
 
 
-
 
NC_008254  Meso_3779  binding-protein-dependent transport systems inner membrane component  30.04 
 
 
274 aa  124  2e-27  Chelativorans sp. BNC1  Bacteria  normal  0.639619  n/a   
 
 
-
 
NC_010676  Bphyt_5636  binding-protein-dependent transport systems inner membrane component  28.97 
 
 
317 aa  123  3e-27  Burkholderia phytofirmans PsJN  Bacteria  normal  0.330167  normal 
 
 
-
 
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