More than 300 homologs were found in PanDaTox collection
for query gene TM1040_1694 on replicon NC_008044
Organism: Ruegeria sp. TM1040



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_008044  TM1040_1694  AsnC family transcriptional regulator  100 
 
 
158 aa  322  2e-87  Ruegeria sp. TM1040  Bacteria  normal  0.43137  normal  0.666184 
 
 
-
 
NC_009049  Rsph17029_0837  AsnC family transcriptional regulator  64.63 
 
 
158 aa  199  9e-51  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  0.0388954  normal 
 
 
-
 
NC_007493  RSP_2165  AsnC family transcriptional regulator  64.63 
 
 
151 aa  199  9.999999999999999e-51  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  0.653585  n/a   
 
 
-
 
NC_009428  Rsph17025_2327  AsnC family transcriptional regulator  63.95 
 
 
151 aa  199  1.9999999999999998e-50  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  0.0714715  normal 
 
 
-
 
NC_009668  Oant_3847  AsnC family transcriptional regulator  60.69 
 
 
164 aa  187  5.999999999999999e-47  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  n/a   
 
 
-
 
NC_004311  BRA0723  proline dehydrogenase transcriptional activator  60 
 
 
164 aa  185  2e-46  Brucella suis 1330  Bacteria  normal  n/a   
 
 
-
 
NC_008740  Maqu_2050  AsnC family transcriptional regulator  56.25 
 
 
150 aa  184  4e-46  Marinobacter aquaeolei VT8  Bacteria  normal  n/a   
 
 
-
 
NC_009720  Xaut_3448  AsnC family transcriptional regulator  57.14 
 
 
156 aa  183  9e-46  Xanthobacter autotrophicus Py2  Bacteria  normal  0.0711543  normal 
 
 
-
 
NC_011368  Rleg2_5293  transcriptional regulator, AsnC family  55.78 
 
 
164 aa  182  2.0000000000000003e-45  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.848277  normal  0.172988 
 
 
-
 
NC_007802  Jann_3495  AsnC family transcriptional regulator  59.31 
 
 
176 aa  181  4.0000000000000006e-45  Jannaschia sp. CCS1  Bacteria  normal  normal  0.0302787 
 
 
-
 
NC_011989  Avi_4324  transcriptional regulator AsnC family  57.93 
 
 
156 aa  181  4.0000000000000006e-45  Agrobacterium vitis S4  Bacteria  normal  0.0666799  n/a   
 
 
-
 
NC_012848  Rleg_4856  transcriptional regulator, AsnC family  55.1 
 
 
164 aa  181  5.0000000000000004e-45  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  decreased coverage  0.00513546  normal  0.170919 
 
 
-
 
NC_008048  Sala_2774  AsnC family transcriptional regulator  56.85 
 
 
156 aa  177  8e-44  Sphingopyxis alaskensis RB2256  Bacteria  normal  normal  0.587297 
 
 
-
 
NC_007794  Saro_0705  AsnC family transcriptional regulator  55.1 
 
 
156 aa  176  1e-43  Novosphingobium aromaticivorans DSM 12444  Bacteria  normal  n/a   
 
 
-
 
NC_008254  Meso_1324  AsnC family transcriptional regulator  56.94 
 
 
150 aa  176  1e-43  Chelativorans sp. BNC1  Bacteria  normal  0.719808  n/a   
 
 
-
 
NC_008686  Pden_0942  AsnC family transcriptional regulator  56.64 
 
 
154 aa  169  1e-41  Paracoccus denitrificans PD1222  Bacteria  normal  normal 
 
 
-
 
NC_007643  Rru_A0655  AsnC family transcriptional regulator  55.41 
 
 
196 aa  165  2e-40  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  n/a   
 
 
-
 
NC_011662  Tmz1t_0571  transcriptional regulator, AsnC family  47.97 
 
 
154 aa  147  4e-35  Thauera sp. MZ1T  Bacteria  normal  n/a   
 
 
-
 
NC_008228  Patl_2461  leucine-responsive transcriptional regulator  47.22 
 
 
161 aa  133  9e-31  Pseudoalteromonas atlantica T6c  Bacteria  unclonable  0.000000018296  n/a   
 
 
-
 
NC_008309  HS_1187  leucine-responsive transcriptional regulator  42.67 
 
 
158 aa  129  1.0000000000000001e-29  Haemophilus somnus 129PT  Bacteria  normal  n/a   
 
 
-
 
NC_011080  SNSL254_A0993  leucine-responsive transcriptional regulator  44.22 
 
 
164 aa  129  2.0000000000000002e-29  Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  decreased coverage  0.000182939  normal 
 
 
-
 
NC_011094  SeSA_A1073  leucine-responsive transcriptional regulator  44.22 
 
 
164 aa  129  2.0000000000000002e-29  Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633  Bacteria  decreased coverage  0.000166195  normal 
 
 
-
 
NC_011149  SeAg_B0964  leucine-responsive transcriptional regulator  44.22 
 
 
164 aa  129  2.0000000000000002e-29  Salmonella enterica subsp. enterica serovar Agona str. SL483  Bacteria  hitchhiker  0.000000000969196  n/a   
 
 
-
 
NC_011083  SeHA_C1058  leucine-responsive transcriptional regulator  44.22 
 
 
164 aa  129  2.0000000000000002e-29  Salmonella enterica subsp. enterica serovar Heidelberg str. SL476  Bacteria  decreased coverage  0.000658641  normal 
 
 
-
 
NC_011205  SeD_A1024  leucine-responsive transcriptional regulator  44.22 
 
 
164 aa  129  2.0000000000000002e-29  Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853  Bacteria  unclonable  0.00000719526  normal 
 
 
-
 
CP001509  ECD_00893  DNA-binding transcriptional dual regulator, leucine-binding  43.54 
 
 
164 aa  127  6e-29  Escherichia coli BL21(DE3)  Bacteria  normal  n/a   
 
 
-
 
CP001637  EcDH1_2754  transcriptional regulator, AsnC family  43.54 
 
 
164 aa  127  6e-29  Escherichia coli DH1  Bacteria  hitchhiker  0.0000000328569  n/a   
 
 
-
 
NC_010498  EcSMS35_2231  leucine-responsive transcriptional regulator  43.54 
 
 
164 aa  127  6e-29  Escherichia coli SMS-3-5  Bacteria  hitchhiker  0.0000028804  normal 
 
 
-
 
NC_009436  Ent638_1413  leucine-responsive transcriptional regulator  43.54 
 
 
164 aa  127  6e-29  Enterobacter sp. 638  Bacteria  decreased coverage  0.0000135875  normal 
 
 
-
 
NC_009801  EcE24377A_0964  leucine-responsive transcriptional regulator  43.54 
 
 
164 aa  127  6e-29  Escherichia coli E24377A  Bacteria  decreased coverage  0.0000000000271902  n/a   
 
 
-
 
NC_012892  B21_00900  hypothetical protein  43.54 
 
 
164 aa  127  6e-29  Escherichia coli BL21  Bacteria  normal  n/a   
 
 
-
 
NC_013422  Hneap_2390  transcriptional regulator, AsnC family  41.22 
 
 
166 aa  127  6e-29  Halothiobacillus neapolitanus c2  Bacteria  normal  n/a   
 
 
-
 
NC_011353  ECH74115_1051  leucine-responsive transcriptional regulator  43.54 
 
 
164 aa  127  6e-29  Escherichia coli O157:H7 str. EC4115  Bacteria  hitchhiker  0.0000229844  normal 
 
 
-
 
NC_010658  SbBS512_E2439  leucine-responsive transcriptional regulator  43.54 
 
 
164 aa  127  6e-29  Shigella boydii CDC 3083-94  Bacteria  decreased coverage  0.0000000000889772  n/a   
 
 
-
 
NC_009901  Spea_2234  leucine-responsive transcriptional regulator  42.95 
 
 
167 aa  127  6e-29  Shewanella pealeana ATCC 700345  Bacteria  hitchhiker  0.0000872232  n/a   
 
 
-
 
NC_010468  EcolC_2707  leucine-responsive transcriptional regulator  43.54 
 
 
164 aa  127  6e-29  Escherichia coli ATCC 8739  Bacteria  hitchhiker  0.0000640359  normal 
 
 
-
 
NC_009800  EcHS_A0994  leucine-responsive transcriptional regulator  43.54 
 
 
164 aa  127  6e-29  Escherichia coli HS  Bacteria  decreased coverage  0.0000000000000266294  n/a   
 
 
-
 
NC_012880  Dd703_2261  leucine-responsive transcriptional regulator  43.54 
 
 
164 aa  127  7.000000000000001e-29  Dickeya dadantii Ech703  Bacteria  normal  0.0124412  n/a   
 
 
-
 
NC_012912  Dd1591_2361  leucine-responsive transcriptional regulator  43.54 
 
 
164 aa  127  7.000000000000001e-29  Dickeya zeae Ech1591  Bacteria  normal  0.84534  n/a   
 
 
-
 
NC_012917  PC1_1718  leucine-responsive transcriptional regulator  43.54 
 
 
164 aa  127  7.000000000000001e-29  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  0.159084  n/a   
 
 
-
 
NC_010506  Swoo_2484  leucine-responsive transcriptional regulator  42.95 
 
 
167 aa  127  8.000000000000001e-29  Shewanella woodyi ATCC 51908  Bacteria  unclonable  0.0000000151917  unclonable  0.000000015798 
 
 
-
 
NC_008700  Sama_1771  leucine-responsive transcriptional regulator  44.06 
 
 
167 aa  126  1.0000000000000001e-28  Shewanella amazonensis SB2B  Bacteria  unclonable  0.0000000022114  normal  0.0203642 
 
 
-
 
NC_009831  Ssed_2126  leucine-responsive transcriptional regulator  42.95 
 
 
167 aa  126  1.0000000000000001e-28  Shewanella sediminis HAW-EB3  Bacteria  unclonable  0.0000000250913  normal  0.0385806 
 
 
-
 
NC_009092  Shew_2025  leucine-responsive transcriptional regulator  42.95 
 
 
167 aa  126  1.0000000000000001e-28  Shewanella loihica PV-4  Bacteria  unclonable  0.00000000839293  unclonable  0.00000134482 
 
 
-
 
NC_009052  Sbal_2155  leucine-responsive transcriptional regulator  42.95 
 
 
168 aa  125  2.0000000000000002e-28  Shewanella baltica OS155  Bacteria  decreased coverage  0.00000000584376  n/a   
 
 
-
 
NC_004347  SO_2305  leucine-responsive transcriptional regulator  42.95 
 
 
168 aa  125  2.0000000000000002e-28  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_009832  Spro_1682  leucine-responsive transcriptional regulator  42.86 
 
 
164 aa  125  2.0000000000000002e-28  Serratia proteamaculans 568  Bacteria  normal  0.94162  normal  0.324618 
 
 
-
 
NC_011663  Sbal223_2190  leucine-responsive transcriptional regulator  42.95 
 
 
168 aa  125  2.0000000000000002e-28  Shewanella baltica OS223  Bacteria  hitchhiker  0.0000625254  normal  0.0646213 
 
 
-
 
NC_009438  Sputcn32_2012  leucine-responsive transcriptional regulator  42.95 
 
 
168 aa  125  2.0000000000000002e-28  Shewanella putrefaciens CN-32  Bacteria  hitchhiker  0.00000455922  n/a   
 
 
-
 
NC_007954  Sden_1742  leucine-responsive transcriptional regulator  42.28 
 
 
166 aa  125  2.0000000000000002e-28  Shewanella denitrificans OS217  Bacteria  decreased coverage  0.00000000110042  n/a   
 
 
-
 
NC_009665  Shew185_2216  leucine-responsive transcriptional regulator  42.95 
 
 
168 aa  125  2.0000000000000002e-28  Shewanella baltica OS185  Bacteria  unclonable  0.0000000000025021  n/a   
 
 
-
 
NC_009997  Sbal195_2324  leucine-responsive transcriptional regulator  42.95 
 
 
168 aa  125  2.0000000000000002e-28  Shewanella baltica OS195  Bacteria  hitchhiker  0.000000733571  normal 
 
 
-
 
NC_008321  Shewmr4_1962  leucine-responsive transcriptional regulator  42.95 
 
 
168 aa  125  2.0000000000000002e-28  Shewanella sp. MR-4  Bacteria  hitchhiker  0.000351105  normal  0.663498 
 
 
-
 
NC_008322  Shewmr7_2014  leucine-responsive transcriptional regulator  42.95 
 
 
168 aa  125  2.0000000000000002e-28  Shewanella sp. MR-7  Bacteria  decreased coverage  0.0000513166  normal  0.0218506 
 
 
-
 
NC_008345  Sfri_1794  leucine-responsive transcriptional regulator  43.36 
 
 
165 aa  125  2.0000000000000002e-28  Shewanella frigidimarina NCIMB 400  Bacteria  hitchhiker  0.000016537  n/a   
 
 
-
 
NC_013421  Pecwa_1986  leucine-responsive transcriptional regulator  42.86 
 
 
164 aa  125  2.0000000000000002e-28  Pectobacterium wasabiae WPP163  Bacteria  normal  0.64528  n/a   
 
 
-
 
NC_008577  Shewana3_2049  leucine-responsive transcriptional regulator  42.95 
 
 
168 aa  125  2.0000000000000002e-28  Shewanella sp. ANA-3  Bacteria  hitchhiker  0.0000202075  hitchhiker  0.00142974 
 
 
-
 
NC_010159  YpAngola_A1612  leucine-responsive transcriptional regulator  42.86 
 
 
164 aa  124  5e-28  Yersinia pestis Angola  Bacteria  hitchhiker  0.000000163573  normal 
 
 
-
 
NC_009708  YpsIP31758_2597  leucine-responsive transcriptional regulator  42.86 
 
 
164 aa  124  5e-28  Yersinia pseudotuberculosis IP 31758  Bacteria  hitchhiker  0.0000000282665  n/a   
 
 
-
 
NC_010465  YPK_2686  leucine-responsive transcriptional regulator  42.86 
 
 
164 aa  124  5e-28  Yersinia pseudotuberculosis YPIII  Bacteria  normal  0.247423  n/a   
 
 
-
 
NC_010581  Bind_1569  AsnC family transcriptional regulator  47.22 
 
 
172 aa  122  1e-27  Beijerinckia indica subsp. indica ATCC 9039  Bacteria  normal  0.194361  normal  0.155211 
 
 
-
 
NC_009457  VC0395_A1494  leucine-responsive transcriptional regulator  41.26 
 
 
164 aa  121  4e-27  Vibrio cholerae O395  Bacteria  hitchhiker  0.00000000974852  n/a   
 
 
-
 
NC_009654  Mmwyl1_4392  AsnC family transcriptional regulator  43.06 
 
 
158 aa  120  6e-27  Marinomonas sp. MWYL1  Bacteria  normal  normal 
 
 
-
 
NC_007963  Csal_1531  AsnC family transcriptional regulator  41.26 
 
 
165 aa  120  6e-27  Chromohalobacter salexigens DSM 3043  Bacteria  normal  n/a   
 
 
-
 
NC_011138  MADE_02115  leucine-responsive transcriptional regulator  43.48 
 
 
144 aa  120  6e-27  Alteromonas macleodii 'Deep ecotype'  Bacteria  hitchhiker  0.0000100067  n/a   
 
 
-
 
NC_011312  VSAL_I1840  leucine-responsive transcriptional regulator  40.54 
 
 
163 aa  120  7e-27  Aliivibrio salmonicida LFI1238  Bacteria  normal  0.757131  n/a   
 
 
-
 
NC_009783  VIBHAR_01796  leucine-responsive transcriptional regulator  41.26 
 
 
164 aa  120  8e-27  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_010511  M446_2201  AsnC family transcriptional regulator  47.37 
 
 
156 aa  119  9.999999999999999e-27  Methylobacterium sp. 4-46  Bacteria  normal  0.0411716  normal  0.420331 
 
 
-
 
NC_013456  VEA_003880  leucine-responsive regulatory protein  40.56 
 
 
164 aa  119  1.9999999999999998e-26  Vibrio sp. Ex25  Bacteria  hitchhiker  0.00000693258  n/a   
 
 
-
 
NC_009439  Pmen_0244  AsnC family transcriptional regulator  37.84 
 
 
162 aa  118  3e-26  Pseudomonas mendocina ymp  Bacteria  normal  normal 
 
 
-
 
NC_003910  CPS_2760  leucine-responsive transcriptional regulator  41.26 
 
 
158 aa  118  3.9999999999999996e-26  Colwellia psychrerythraea 34H  Bacteria  normal  n/a   
 
 
-
 
NC_009656  PSPA7_6082  leucine-responsive regulatory protein  37.84 
 
 
162 aa  117  4.9999999999999996e-26  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_008825  Mpe_A3749  AsnC family transcriptional regulator  42.95 
 
 
181 aa  117  4.9999999999999996e-26  Methylibium petroleiphilum PM1  Bacteria  normal  normal  0.648242 
 
 
-
 
NC_008463  PA14_70080  leucine-responsive regulatory protein  37.84 
 
 
162 aa  117  4.9999999999999996e-26  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal 
 
 
-
 
NC_008782  Ajs_2419  AsnC family transcriptional regulator  43.05 
 
 
159 aa  117  9e-26  Acidovorax sp. JS42  Bacteria  normal  0.370827  normal  0.408785 
 
 
-
 
NC_011992  Dtpsy_1428  transcriptional regulator, AsnC family  43.05 
 
 
159 aa  117  9e-26  Acidovorax ebreus TPSY  Bacteria  normal  0.92008  n/a   
 
 
-
 
NC_002947  PP_5271  leucine-responsive regulatory protein  38.41 
 
 
162 aa  116  9.999999999999999e-26  Pseudomonas putida KT2440  Bacteria  normal  normal 
 
 
-
 
NC_003910  CPS_4408  proline-responsive regulatory protein  41.22 
 
 
158 aa  116  9.999999999999999e-26  Colwellia psychrerythraea 34H  Bacteria  normal  0.982858  n/a   
 
 
-
 
NC_010322  PputGB1_5323  AsnC family transcriptional regulator  38.41 
 
 
162 aa  116  9.999999999999999e-26  Pseudomonas putida GB-1  Bacteria  normal  normal  0.0644813 
 
 
-
 
NC_011662  Tmz1t_3993  transcriptional regulator, AsnC family  39.07 
 
 
155 aa  116  9.999999999999999e-26  Thauera sp. MZ1T  Bacteria  normal  n/a   
 
 
-
 
NC_010501  PputW619_0199  AsnC family transcriptional regulator  38.41 
 
 
162 aa  116  9.999999999999999e-26  Pseudomonas putida W619  Bacteria  normal  hitchhiker  0.00074926 
 
 
-
 
NC_009512  Pput_5181  AsnC family transcriptional regulator  38.41 
 
 
162 aa  116  9.999999999999999e-26  Pseudomonas putida F1  Bacteria  normal  0.73265  normal  0.0995684 
 
 
-
 
NC_004578  PSPTO_0100  leucine-responsive regulatory protein  38.41 
 
 
162 aa  115  1.9999999999999998e-25  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_012560  Avin_48000  leucin responsive regulatory protein  38.51 
 
 
162 aa  115  1.9999999999999998e-25  Azotobacter vinelandii DJ  Bacteria  normal  0.964771  n/a   
 
 
-
 
NC_007347  Reut_A2546  AsnC family transcriptional regulator  37.09 
 
 
167 aa  115  1.9999999999999998e-25  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_012791  Vapar_3966  transcriptional regulator, AsnC family  38.1 
 
 
155 aa  115  1.9999999999999998e-25  Variovorax paradoxus S110  Bacteria  normal  0.716061  n/a   
 
 
-
 
NC_008709  Ping_3606  transcriptional regulator of AsnC/Lrp family protein  39.19 
 
 
155 aa  115  1.9999999999999998e-25  Psychromonas ingrahamii 37  Bacteria  normal  normal 
 
 
-
 
NC_007005  Psyr_0234  regulatory proteins, AsnC/Lrp  38.41 
 
 
162 aa  115  3e-25  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal 
 
 
-
 
NC_007492  Pfl01_5527  AsnC family transcriptional regulator  38.41 
 
 
162 aa  115  3e-25  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal  0.414864 
 
 
-
 
NC_007973  Rmet_0741  AsnC family transcriptional regulator  37.09 
 
 
169 aa  115  3e-25  Cupriavidus metallidurans CH34  Bacteria  normal  0.703113  normal 
 
 
-
 
NC_010681  Bphyt_2981  transcriptional regulator, AsnC family  36.81 
 
 
162 aa  114  3.9999999999999997e-25  Burkholderia phytofirmans PsJN  Bacteria  normal  0.160309  hitchhiker  0.00904587 
 
 
-
 
NC_009636  Smed_2574  AsnC family transcriptional regulator  39.86 
 
 
154 aa  114  3.9999999999999997e-25  Sinorhizobium medicae WSM419  Bacteria  normal  0.0518335  normal  0.327443 
 
 
-
 
NC_007434  BURPS1710b_2973  leucine-responsive regulatory protein  35.17 
 
 
162 aa  114  5e-25  Burkholderia pseudomallei 1710b  Bacteria  normal  n/a   
 
 
-
 
NC_009076  BURPS1106A_2924  leucine-responsive regulatory protein  35.17 
 
 
162 aa  114  5e-25  Burkholderia pseudomallei 1106a  Bacteria  normal  0.518607  n/a   
 
 
-
 
NC_007651  BTH_I1657  leucine-responsive regulatory protein  35.17 
 
 
162 aa  114  5e-25  Burkholderia thailandensis E264  Bacteria  normal  n/a   
 
 
-
 
NC_009074  BURPS668_2863  leucine-responsive regulatory protein  35.17 
 
 
162 aa  114  5e-25  Burkholderia pseudomallei 668  Bacteria  normal  0.437935  n/a   
 
 
-
 
NC_007951  Bxe_A1002  AsnC family transcriptional regulator  36.81 
 
 
162 aa  114  5e-25  Burkholderia xenovorans LB400  Bacteria  normal  normal  0.782239 
 
 
-
 
NC_011071  Smal_0443  transcriptional regulator, AsnC family  36.71 
 
 
159 aa  114  6e-25  Stenotrophomonas maltophilia R551-3  Bacteria  normal  normal 
 
 
-
 
NC_010682  Rpic_0797  transcriptional regulator, AsnC family  37.5 
 
 
165 aa  114  6.9999999999999995e-25  Ralstonia pickettii 12J  Bacteria  normal  0.163413  normal  0.817989 
 
 
-
 
NC_010084  Bmul_2239  AsnC family transcriptional regulator  35.42 
 
 
162 aa  114  6.9999999999999995e-25  Burkholderia multivorans ATCC 17616  Bacteria  normal  normal 
 
 
-
 
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