More than 300 homologs were found in PanDaTox collection
for query gene TM1040_1074 on replicon NC_008044
Organism: Ruegeria sp. TM1040



Page 1 of 3    << first  < prev  1  2  3    next >  last >>   


Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_008044  TM1040_1074  cold-shock DNA-binding protein family protein  100 
 
 
68 aa  138  3e-32  Ruegeria sp. TM1040  Bacteria  normal  0.0836241  normal  0.241517 
 
 
-
 
NC_009952  Dshi_0009  cold-shock DNA-binding domain protein  77.94 
 
 
68 aa  109  1.0000000000000001e-23  Dinoroseobacter shibae DFL 12  Bacteria  normal  normal 
 
 
-
 
NC_009952  Dshi_2219  putative cold-shock DNA-binding domain protein  76.47 
 
 
68 aa  109  1.0000000000000001e-23  Dinoroseobacter shibae DFL 12  Bacteria  normal  normal 
 
 
-
 
NC_007493  RSP_0591  cold-shock DNA-binding protein family protein  72.06 
 
 
68 aa  107  7.000000000000001e-23  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  n/a   
 
 
-
 
NC_009049  Rsph17029_2245  cold-shock DNA-binding domain-containing protein  72.06 
 
 
68 aa  107  7.000000000000001e-23  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  normal  0.38362 
 
 
-
 
NC_009428  Rsph17025_0495  cold-shock DNA-binding domain-containing protein  72.06 
 
 
68 aa  107  7.000000000000001e-23  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  normal  0.309606 
 
 
-
 
NC_008687  Pden_3143  cold-shock DNA-binding domain-containing protein  75 
 
 
68 aa  106  9.000000000000001e-23  Paracoccus denitrificans PD1222  Bacteria  normal  normal 
 
 
-
 
NC_007802  Jann_3625  cold-shock DNA-binding protein family protein  76.92 
 
 
68 aa  105  2e-22  Jannaschia sp. CCS1  Bacteria  normal  0.164813  normal  0.0835288 
 
 
-
 
NC_008687  Pden_3653  cold-shock DNA-binding domain-containing protein  72.06 
 
 
80 aa  104  5e-22  Paracoccus denitrificans PD1222  Bacteria  normal  0.820165  normal  0.8886 
 
 
-
 
NC_009049  Rsph17029_0735  cold-shock DNA-binding domain-containing protein  72.06 
 
 
68 aa  103  7e-22  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  0.976411  normal  0.373537 
 
 
-
 
NC_007493  RSP_2024  cold-shock DNA-binding protein family protein  72.06 
 
 
68 aa  103  7e-22  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  n/a   
 
 
-
 
NC_008686  Pden_0954  cold-shock DNA-binding domain-containing protein  71.64 
 
 
68 aa  103  1e-21  Paracoccus denitrificans PD1222  Bacteria  normal  0.631034  normal  0.812615 
 
 
-
 
NC_009431  Rsph17025_4329  hypothetical protein  70.59 
 
 
68 aa  100  7e-21  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  normal  0.208733 
 
 
-
 
NC_007493  RSP_1952  cold-shock DNA-binding protein family protein  66.18 
 
 
77 aa  98.2  3e-20  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  n/a   
 
 
-
 
NC_007494  RSP_3621  cold-shock DNA-binding protein  66.18 
 
 
77 aa  98.2  3e-20  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  n/a   
 
 
-
 
NC_008044  TM1040_1752  cold-shock DNA-binding protein family protein  66.18 
 
 
68 aa  98.6  3e-20  Ruegeria sp. TM1040  Bacteria  normal  normal 
 
 
-
 
NC_009431  Rsph17025_4258  hypothetical protein  66.18 
 
 
68 aa  98.2  4e-20  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  0.321323  normal  0.982609 
 
 
-
 
NC_009049  Rsph17029_0603  cold-shock DNA-binding domain-containing protein  66.18 
 
 
68 aa  98.2  4e-20  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  normal 
 
 
-
 
NC_007493  RSP_0386  cold-shock DNA-binding protein family protein  68.66 
 
 
68 aa  97.8  5e-20  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  0.654168  n/a   
 
 
-
 
NC_009049  Rsph17029_2040  cold-shock DNA-binding domain-containing protein  68.66 
 
 
68 aa  97.8  5e-20  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  normal 
 
 
-
 
NC_009428  Rsph17025_0850  cold-shock DNA-binding domain-containing protein  68.66 
 
 
68 aa  97.8  5e-20  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  normal 
 
 
-
 
NC_008686  Pden_2065  cold-shock DNA-binding domain-containing protein  66.18 
 
 
68 aa  97.1  7e-20  Paracoccus denitrificans PD1222  Bacteria  normal  hitchhiker  0.00142025 
 
 
-
 
NC_009431  Rsph17025_4290  hypothetical protein  64.71 
 
 
68 aa  96.7  8e-20  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  normal 
 
 
-
 
NC_008687  Pden_3140  cold-shock DNA-binding domain-containing protein  64.71 
 
 
68 aa  96.7  9e-20  Paracoccus denitrificans PD1222  Bacteria  normal  0.577228  normal 
 
 
-
 
NC_009952  Dshi_0769  cold-shock DNA-binding domain protein  65.67 
 
 
69 aa  95.9  2e-19  Dinoroseobacter shibae DFL 12  Bacteria  normal  normal  0.218929 
 
 
-
 
NC_007494  RSP_3620  cold-shock DNA-binding protein  63.24 
 
 
68 aa  95.5  2e-19  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  n/a   
 
 
-
 
NC_008044  TM1040_1727  cold-shock DNA-binding protein family protein  69.23 
 
 
68 aa  95.1  3e-19  Ruegeria sp. TM1040  Bacteria  normal  normal 
 
 
-
 
NC_010581  Bind_3035  cold-shock DNA-binding domain-containing protein  65.22 
 
 
69 aa  90.1  1e-17  Beijerinckia indica subsp. indica ATCC 9039  Bacteria  normal  0.084577  normal 
 
 
-
 
NC_011004  Rpal_3878  cold-shock DNA-binding domain protein  63.77 
 
 
69 aa  88.6  2e-17  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_007802  Jann_1094  cold-shock DNA-binding protein family protein  61.54 
 
 
68 aa  88.6  3e-17  Jannaschia sp. CCS1  Bacteria  normal  normal  0.0243204 
 
 
-
 
NC_011365  Gdia_2681  cold-shock DNA-binding domain protein  60 
 
 
68 aa  86.7  9e-17  Gluconacetobacter diazotrophicus PAl 5  Bacteria  normal  0.741556  normal 
 
 
-
 
NC_010172  Mext_1185  cold-shock protein DNA-binding  62.32 
 
 
69 aa  85.5  2e-16  Methylobacterium extorquens PA1  Bacteria  normal  normal  0.0202677 
 
 
-
 
NC_011757  Mchl_1345  cold-shock DNA-binding domain protein  62.32 
 
 
69 aa  85.5  2e-16  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal  0.708004 
 
 
-
 
NC_009484  Acry_2842  cold-shock DNA-binding domain-containing protein  58.82 
 
 
68 aa  85.5  2e-16  Acidiphilium cryptum JF-5  Bacteria  normal  n/a   
 
 
-
 
NC_010725  Mpop_4677  cold-shock DNA-binding domain protein  59.42 
 
 
69 aa  85.1  3e-16  Methylobacterium populi BJ001  Bacteria  normal  0.403947  normal 
 
 
-
 
NC_009636  Smed_2005  cold-shock DNA-binding domain-containing protein  63.64 
 
 
69 aa  84  6e-16  Sinorhizobium medicae WSM419  Bacteria  normal  0.745199  normal 
 
 
-
 
NC_009719  Plav_0932  cold-shock DNA-binding domain-containing protein  58.21 
 
 
68 aa  83.6  7e-16  Parvibaculum lavamentivorans DS-1  Bacteria  normal  normal 
 
 
-
 
NC_007964  Nham_3436  cold-shock DNA-binding domain-containing protein  58.82 
 
 
69 aa  83.6  8e-16  Nitrobacter hamburgensis X14  Bacteria  normal  n/a   
 
 
-
 
NC_007778  RPB_2176  cold-shock DNA-binding domain-containing protein  60.29 
 
 
69 aa  83.6  9e-16  Rhodopseudomonas palustris HaA2  Bacteria  normal  0.141033  normal  0.0176419 
 
 
-
 
NC_007958  RPD_3257  cold-shock protein, DNA-binding  60.29 
 
 
69 aa  83.6  9e-16  Rhodopseudomonas palustris BisB5  Bacteria  normal  normal  0.0261895 
 
 
-
 
NC_010172  Mext_4164  cold-shock protein DNA-binding  57.97 
 
 
69 aa  82  0.000000000000002  Methylobacterium extorquens PA1  Bacteria  normal  0.593748  normal 
 
 
-
 
NC_004310  BR1492  cold-shock family protein  60.87 
 
 
69 aa  82.4  0.000000000000002  Brucella suis 1330  Bacteria  normal  0.136425  n/a   
 
 
-
 
NC_011757  Mchl_4533  cold-shock DNA-binding domain protein  57.97 
 
 
69 aa  82  0.000000000000002  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal 
 
 
-
 
NC_010172  Mext_1892  cold-shock protein DNA-binding  59.42 
 
 
69 aa  82.4  0.000000000000002  Methylobacterium extorquens PA1  Bacteria  normal  normal 
 
 
-
 
NC_007643  Rru_A1521  cold-shock DNA-binding protein family protein  56.92 
 
 
68 aa  81.6  0.000000000000003  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  0.490356  n/a   
 
 
-
 
NC_010505  Mrad2831_5022  cold-shock DNA-binding domain-containing protein  57.97 
 
 
69 aa  82  0.000000000000003  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.499823  normal 
 
 
-
 
NC_007964  Nham_2750  cold-shock DNA-binding domain-containing protein  59.42 
 
 
69 aa  82  0.000000000000003  Nitrobacter hamburgensis X14  Bacteria  normal  0.33157  n/a   
 
 
-
 
NC_009621  Smed_5421  cold-shock DNA-binding domain-containing protein  60.61 
 
 
68 aa  81.3  0.000000000000004  Sinorhizobium medicae WSM419  Bacteria  normal  0.14942  normal  0.64967 
 
 
-
 
NC_013093  Amir_0440  cold-shock DNA-binding domain protein  61.76 
 
 
68 aa  81.6  0.000000000000004  Actinosynnema mirum DSM 43827  Bacteria  normal  0.270892  n/a   
 
 
-
 
NC_008347  Mmar10_1185  cold-shock DNA-binding protein family protein  59.09 
 
 
69 aa  81.3  0.000000000000004  Maricaulis maris MCS10  Bacteria  normal  normal 
 
 
-
 
NC_009505  BOV_1446  cold-shock family protein  63.49 
 
 
105 aa  81.3  0.000000000000005  Brucella ovis ATCC 25840  Bacteria  normal  0.215876  n/a   
 
 
-
 
NC_007406  Nwi_2375  cold-shock protein, DNA-binding  57.97 
 
 
69 aa  80.9  0.000000000000006  Nitrobacter winogradskyi Nb-255  Bacteria  normal  0.583398  normal 
 
 
-
 
NC_010511  M446_5491  cold-shock DNA-binding domain-containing protein  57.97 
 
 
69 aa  80.5  0.000000000000006  Methylobacterium sp. 4-46  Bacteria  normal  0.599855  normal  0.0633447 
 
 
-
 
NC_009667  Oant_1676  cold-shock DNA-binding domain-containing protein  59.42 
 
 
69 aa  80.5  0.000000000000008  Ochrobactrum anthropi ATCC 49188  Bacteria  decreased coverage  0.00586625  n/a   
 
 
-
 
NC_007406  Nwi_3054  cold-shock protein, DNA-binding  61.19 
 
 
66 aa  79.7  0.00000000000001  Nitrobacter winogradskyi Nb-255  Bacteria  normal  normal  0.0480379 
 
 
-
 
NC_007643  Rru_A1914  cold-shock DNA-binding protein family protein  51.47 
 
 
68 aa  79.3  0.00000000000001  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  n/a   
 
 
-
 
NC_007964  Nham_0810  cold-shock DNA-binding domain-containing protein  59.09 
 
 
69 aa  79.7  0.00000000000001  Nitrobacter hamburgensis X14  Bacteria  normal  0.509144  n/a   
 
 
-
 
NC_010510  Mrad2831_6274  cold-shock DNA-binding domain-containing protein  57.58 
 
 
69 aa  80.1  0.00000000000001  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.517051  normal 
 
 
-
 
NC_010338  Caul_3723  cold-shock DNA-binding domain-containing protein  59.09 
 
 
179 aa  79  0.00000000000002  Caulobacter sp. K31  Bacteria  normal  normal 
 
 
-
 
NC_010172  Mext_1893  cold-shock protein DNA-binding  56.52 
 
 
69 aa  79  0.00000000000002  Methylobacterium extorquens PA1  Bacteria  normal  0.208302  normal 
 
 
-
 
NC_009719  Plav_3161  cold-shock DNA-binding domain-containing protein  56.06 
 
 
69 aa  79.3  0.00000000000002  Parvibaculum lavamentivorans DS-1  Bacteria  normal  0.161902  normal  0.108125 
 
 
-
 
NC_009485  BBta_7552  cold-shock DNA-binding protein family protein  56.52 
 
 
69 aa  79.3  0.00000000000002  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.229595  normal 
 
 
-
 
NC_011894  Mnod_1810  cold-shock DNA-binding domain protein  56.52 
 
 
69 aa  79  0.00000000000002  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.275955  n/a   
 
 
-
 
NC_007778  RPB_1791  cold-shock DNA-binding domain-containing protein  57.97 
 
 
70 aa  78.6  0.00000000000003  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal  0.29852 
 
 
-
 
NC_009485  BBta_7022  cold-shock DNA-binding protein family protein  57.97 
 
 
70 aa  78.6  0.00000000000003  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.0599246  normal  0.604228 
 
 
-
 
NC_007958  RPD_3513  cold-shock DNA-binding domain protein  57.97 
 
 
70 aa  78.6  0.00000000000003  Rhodopseudomonas palustris BisB5  Bacteria  normal  normal 
 
 
-
 
NC_007964  Nham_0367  cold-shock DNA-binding domain-containing protein  58.46 
 
 
73 aa  78.2  0.00000000000003  Nitrobacter hamburgensis X14  Bacteria  normal  n/a   
 
 
-
 
NC_007964  Nham_3396  cold-shock DNA-binding domain-containing protein  59.7 
 
 
66 aa  78.6  0.00000000000003  Nitrobacter hamburgensis X14  Bacteria  normal  0.219248  n/a   
 
 
-
 
NC_011004  Rpal_4194  cold-shock DNA-binding domain protein  57.97 
 
 
70 aa  78.6  0.00000000000003  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.69443  n/a   
 
 
-
 
NC_010338  Caul_4283  cold-shock DNA-binding domain-containing protein  59.09 
 
 
68 aa  77.8  0.00000000000004  Caulobacter sp. K31  Bacteria  normal  normal  0.331477 
 
 
-
 
NC_009720  Xaut_3214  cold-shock DNA-binding domain-containing protein  59.09 
 
 
68 aa  77.8  0.00000000000005  Xanthobacter autotrophicus Py2  Bacteria  normal  0.265865  normal 
 
 
-
 
NC_008347  Mmar10_2873  cold-shock DNA-binding protein family protein  55.07 
 
 
70 aa  77.8  0.00000000000005  Maricaulis maris MCS10  Bacteria  normal  normal 
 
 
-
 
NC_007964  Nham_2533  cold-shock DNA-binding domain-containing protein  57.58 
 
 
69 aa  77.4  0.00000000000006  Nitrobacter hamburgensis X14  Bacteria  normal  n/a   
 
 
-
 
NC_010511  M446_2980  cold-shock DNA-binding domain-containing protein  55.07 
 
 
73 aa  77  0.00000000000008  Methylobacterium sp. 4-46  Bacteria  decreased coverage  0.0073832  normal  0.0936276 
 
 
-
 
NC_010510  Mrad2831_6033  cold-shock DNA-binding domain-containing protein  55.07 
 
 
69 aa  77  0.00000000000008  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.263263  normal  0.0669471 
 
 
-
 
NC_007406  Nwi_0311  cold-shock protein, DNA-binding  59.09 
 
 
68 aa  76.3  0.0000000000001  Nitrobacter winogradskyi Nb-255  Bacteria  normal  0.656988  normal 
 
 
-
 
NC_009485  BBta_6679  cold-shock DNA-binding protein family protein  55.22 
 
 
66 aa  76.3  0.0000000000001  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.703207  normal 
 
 
-
 
NC_009485  BBta_3854  cold-shock DNA-binding protein family protein  56.92 
 
 
69 aa  76.6  0.0000000000001  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.260503  normal 
 
 
-
 
NC_007925  RPC_3705  cold-shock DNA-binding domain-containing protein  56.52 
 
 
70 aa  76.6  0.0000000000001  Rhodopseudomonas palustris BisB18  Bacteria  normal  0.59949  normal 
 
 
-
 
NC_007964  Nham_2846  cold-shock DNA-binding domain-containing protein  56.92 
 
 
73 aa  76.6  0.0000000000001  Nitrobacter hamburgensis X14  Bacteria  normal  0.495681  n/a   
 
 
-
 
NC_013131  Caci_2129  cold-shock DNA-binding domain protein  55.88 
 
 
69 aa  75.5  0.0000000000002  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_009953  Sare_0310  cold-shock DNA-binding domain-containing protein  60.66 
 
 
67 aa  75.9  0.0000000000002  Salinispora arenicola CNS-205  Bacteria  normal  hitchhiker  0.000124748 
 
 
-
 
NC_009380  Strop_0268  cold-shock DNA-binding domain-containing protein  60.66 
 
 
67 aa  75.9  0.0000000000002  Salinispora tropica CNB-440  Bacteria  normal  hitchhiker  0.00110044 
 
 
-
 
NC_009636  Smed_1949  cold-shock DNA-binding domain-containing protein  56.06 
 
 
69 aa  75.5  0.0000000000002  Sinorhizobium medicae WSM419  Bacteria  normal  0.589262  normal  0.169365 
 
 
-
 
NC_007333  Tfu_0384  cold-shock DNA-binding protein family protein  56.72 
 
 
67 aa  75.5  0.0000000000002  Thermobifida fusca YX  Bacteria  normal  n/a   
 
 
-
 
NC_011757  Mchl_0846  cold-shock DNA-binding domain protein  56.06 
 
 
69 aa  75.9  0.0000000000002  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal  0.012505 
 
 
-
 
NC_010172  Mext_0886  cold-shock protein DNA-binding  56.06 
 
 
69 aa  75.9  0.0000000000002  Methylobacterium extorquens PA1  Bacteria  normal  normal  0.0757124 
 
 
-
 
NC_011666  Msil_1056  cold-shock DNA-binding domain protein  57.35 
 
 
70 aa  75.9  0.0000000000002  Methylocella silvestris BL2  Bacteria  n/a    normal  0.102694 
 
 
-
 
NC_007778  RPB_2487  cold-shock DNA-binding domain-containing protein  55.22 
 
 
67 aa  75.9  0.0000000000002  Rhodopseudomonas palustris HaA2  Bacteria  normal  0.0454544  normal 
 
 
-
 
NC_007964  Nham_0398  cold-shock DNA-binding domain-containing protein  57.58 
 
 
68 aa  75.9  0.0000000000002  Nitrobacter hamburgensis X14  Bacteria  normal  n/a   
 
 
-
 
NC_011894  Mnod_0841  cold-shock DNA-binding domain protein  55.07 
 
 
69 aa  75.9  0.0000000000002  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_010725  Mpop_0812  cold-shock DNA-binding domain protein  54.55 
 
 
69 aa  75.9  0.0000000000002  Methylobacterium populi BJ001  Bacteria  normal  0.674883  normal  0.12074 
 
 
-
 
NC_014210  Ndas_4077  cold-shock DNA-binding domain protein  58.06 
 
 
67 aa  75.1  0.0000000000003  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  normal  0.742445 
 
 
-
 
NC_012850  Rleg_0246  cold-shock DNA-binding domain protein  52.17 
 
 
69 aa  75.1  0.0000000000003  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.251668  normal 
 
 
-
 
NC_011004  Rpal_3463  cold-shock DNA-binding domain protein  52.94 
 
 
67 aa  74.7  0.0000000000003  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.107115  n/a   
 
 
-
 
NC_007925  RPC_4272  cold-shock DNA-binding domain-containing protein  56.72 
 
 
66 aa  75.1  0.0000000000003  Rhodopseudomonas palustris BisB18  Bacteria  normal  0.217345  normal  0.672054 
 
 
-
 
NC_008783  BARBAKC583_0977  cold-shock DNA-binding family protein  55.22 
 
 
69 aa  75.5  0.0000000000003  Bartonella bacilliformis KC583  Bacteria  normal  0.717834  n/a   
 
 
-
 
NC_011369  Rleg2_0217  cold-shock DNA-binding domain protein  52.17 
 
 
69 aa  75.1  0.0000000000003  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal 
 
 
-
 
NC_008541  Arth_0777  cold-shock DNA-binding protein family protein  57.38 
 
 
67 aa  75.1  0.0000000000003  Arthrobacter sp. FB24  Bacteria  normal  n/a   
 
 
-
 
NC_007958  RPD_2957  cold-shock DNA-binding domain protein  52.94 
 
 
67 aa  74.7  0.0000000000004  Rhodopseudomonas palustris BisB5  Bacteria  normal  0.200644  normal 
 
 
-
 
Page 1 of 3    << first  < prev  1  2  3    next >  last >>