42 homologs were found in PanDaTox collection
for query gene TM1040_0436 on replicon NC_008044
Organism: Ruegeria sp. TM1040



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Replicon accession
Locus tag
Product
% identity
Alignment on query gene
Alignment on homolog gene
Length
Bit score

E-value
Organism name
Kingdom
Plasmid clonability
Plasmid unclonability p-value
Fosmid clonability
Fosmid unclonability p-value
Coverage Plot
PanDaTox homologs
Experimental validation
NC_008044  TM1040_0436  PaaX-like  100 
 
 		 301 aa  606  9.999999999999999e-173  Ruegeria sp. TM1040  Bacteria  normal  1  normal  0.581976 
 
 
-
 
NC_009956  Dshi_3828  PaaX family transcriptional regulator  36.52 
 
 		 264 aa  143  4e-33  Dinoroseobacter shibae DFL 12  Bacteria  normal  0.648927  normal  1 
 
 
-
 
NC_007802  Jann_0659  PaaX-like  34.6 
 
 		 265 aa  121  9.999999999999999e-27  Jannaschia sp. CCS1  Bacteria  normal  0.702789  normal  1 
 
 
-
 
NC_002947  PP_3286  PaaX family transcriptional regulator  28.57 
 
 		 307 aa  84.3  0.000000000000002  Pseudomonas putida KT2440  Bacteria  normal  0.17765  normal  1 
 
 
-
 
NC_009720  Xaut_0895  PaaX family transcriptional regulator  30.25 
 
 		 305 aa  84  0.000000000000003  Xanthobacter autotrophicus Py2  Bacteria  normal  0.947925  normal  1 
 
 
-
 
NC_007958  RPD_1521  phenylacetic acid degradation operon negative regulatory protein PaaX  28.69 
 
 		 312 aa  83.2  0.000000000000005  Rhodopseudomonas palustris BisB5  Bacteria  normal  1  normal  1 
 
 
-
 
NC_010501  PputW619_2623  PaaX family transcriptional regulator  27.38 
 
 		 334 aa  82.4  0.000000000000009  Pseudomonas putida W619  Bacteria  normal  0.312733  normal  0.0873289 
 
 
-
 
NC_009512  Pput_2473  PaaX family transcriptional regulator  29.07 
 
 		 334 aa  81.6  0.00000000000001  Pseudomonas putida F1  Bacteria  normal  0.303711  normal  1 
 
 
-
 
NC_010322  PputGB1_2610  PaaX family transcriptional regulator  27.2 
 
 		 334 aa  80.9  0.00000000000002  Pseudomonas putida GB-1  Bacteria  normal  0.218497  normal  0.0704814 
 
 
-
 
NC_009654  Mmwyl1_3103  PaaX family transcriptional regulator  24.9 
 
 		 307 aa  80.1  0.00000000000004  Marinomonas sp. MWYL1  Bacteria  decreased coverage  0.000000661945  decreased coverage  0.0000397547 
 
 
-
 
NC_009485  BBta_2864  phenylacetic acid degradation operon negative regulatory protein paaX  28.33 
 
 		 293 aa  73.9  0.000000000003  Bradyrhizobium sp. BTAi1  Bacteria  decreased coverage  0.00499823  normal  0.0484276 
 
 
-
 
NC_007348  Reut_B3734  phenylacetic acid degradation operon negative regulatory protein PaaX  28.52 
 
 		 307 aa  73.2  0.000000000006  Ralstonia eutropha JMP134  Bacteria  normal  1  n/a   
 
 
-
 
NC_009832  Spro_3083  PaaX family transcriptional regulator  26 
 
 		 312 aa  68.6  0.0000000001  Serratia proteamaculans 568  Bacteria  normal  1  normal  0.415086 
 
 
-
 
NC_009484  Acry_0094  PaaX family transcriptional regulator  28.51 
 
 		 289 aa  67.8  0.0000000002  Acidiphilium cryptum JF-5  Bacteria  normal  0.339453  n/a   
 
 
-
 
NC_011894  Mnod_7200  transcriptional regulator, PaaX family  30.96 
 
 		 292 aa  66.2  0.0000000007  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.803046  n/a   
 
 
-
 
NC_007298  Daro_0386  phenylacetic acid degradation operon negative regulatory protein PaaX  26.59 
 
 		 352 aa  65.5  0.000000001  Dechloromonas aromatica RCB  Bacteria  hitchhiker  0.0000000187716  normal  0.0170462 
 
 
-
 
NC_009801  EcE24377A_1585  phenylacetic acid degradation operon negative regulatory protein PaaX  24.54 
 
 		 316 aa  65.5  0.000000001  Escherichia coli E24377A  Bacteria  normal  1  n/a   
 
 
-
 
NC_009800  EcHS_A1486  phenylacetic acid degradation operon negative regulatory protein PaaX  24.56 
 
 		 316 aa  64.7  0.000000002  Escherichia coli HS  Bacteria  normal  1  n/a   
 
 
-
 
NC_010468  EcolC_2256  PaaX family transcriptional regulator  24.56 
 
 		 316 aa  64.7  0.000000002  Escherichia coli ATCC 8739  Bacteria  normal  0.203735  normal  1 
 
 
-
 
CP001637  EcDH1_2246  transcriptional regulator, PaaX family  24.56 
 
 		 316 aa  65.1  0.000000002  Escherichia coli DH1  Bacteria  normal  0.218129  n/a   
 
 
-
 
NC_013411  GYMC61_2859  transcriptional regulator, PaaX family  23.11 
 
 		 285 aa  63.2  0.000000005  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_011662  Tmz1t_1514  transcriptional regulator, PaaX family  23.89 
 
 		 316 aa  62.8  0.000000006  Thauera sp. MZ1T  Bacteria  normal  0.139923  n/a   
 
 
-
 
NC_007925  RPC_0692  phenylacetic acid degradation operon negative regulatory protein PaaX  24.57 
 
 		 287 aa  62.4  0.000000009  Rhodopseudomonas palustris BisB18  Bacteria  normal  0.717402  normal  1 
 
 
-
 
NC_009620  Smed_4146  PaaX family transcriptional regulator  27.78 
 
 		 305 aa  60.5  0.00000003  Sinorhizobium medicae WSM419  Bacteria  normal  1  normal  0.85173 
 
 
-
 
NC_011662  Tmz1t_0196  transcriptional regulator, PaaX family  26.02 
 
 		 319 aa  59.3  0.00000008  Thauera sp. MZ1T  Bacteria  normal  1  n/a   
 
 
-
 
NC_013411  GYMC61_2835  transcriptional regulator, PaaX family  24.26 
 
 		 285 aa  59.3  0.00000008  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_013235  Namu_0588  transcriptional regulator, PaaX family  26.38 
 
 		 276 aa  57  0.0000004  Nakamurella multipartita DSM 44233  Bacteria  normal  1  normal  1 
 
 
-
 
NC_010506  Swoo_0216  PaaX family transcriptional regulator  24.03 
 
 		 311 aa  56.6  0.0000005  Shewanella woodyi ATCC 51908  Bacteria  normal  1  normal  0.0165647 
 
 
-
 
NC_009380  Strop_0708  PaaX family transcriptional regulator  25.32 
 
 		 272 aa  55.8  0.0000007  Salinispora tropica CNB-440  Bacteria  normal  0.719013  normal  0.640912 
 
 
-
 
NC_013947  Snas_6455  transcriptional regulator, PaaX family  25.74 
 
 		 260 aa  55.8  0.0000008  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  1  normal  1 
 
 
-
 
NC_011894  Mnod_3357  transcriptional regulator, PaaX family  26.36 
 
 		 301 aa  55.8  0.0000009  Methylobacterium nodulans ORS 2060  Bacteria  normal  1  n/a   
 
 
-
 
NC_009953  Sare_0655  PaaX family transcriptional regulator  26.18 
 
 		 272 aa  55.8  0.0000009  Salinispora arenicola CNS-205  Bacteria  normal  0.0748596  hitchhiker  0.00291671 
 
 
-
 
NC_008709  Ping_0661  PaaX domain-containing protein, C- domain  27.59 
 
 		 285 aa  53.5  0.000004  Psychromonas ingrahamii 37  Bacteria  normal  1  normal  1 
 
 
-
 
NC_013131  Caci_5523  transcriptional regulator, PaaX family  24.52 
 
 		 267 aa  52.8  0.000007  Catenulispora acidiphila DSM 44928  Bacteria  normal  1  normal  0.543092 
 
 
-
 
NC_013595  Sros_8420  putative transcriptional regulator, PaaX family  25.73 
 
 		 260 aa  51.6  0.00002  Streptosporangium roseum DSM 43021  Bacteria  normal  0.289328  normal  1 
 
 
-
 
NC_013131  Caci_2009  transcriptional regulator, PaaX family  25.83 
 
 		 281 aa  50.8  0.00003  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.429433  normal  1 
 
 
-
 
NC_008699  Noca_1206  PaaX domain-containing protein, C- domain  24.48 
 
 		 258 aa  48.1  0.0002  Nocardioides sp. JS614  Bacteria  normal  1  n/a   
 
 
-
 
NC_014151  Cfla_0294  transcriptional regulator, PaaX family  25.1 
 
 		 318 aa  46.6  0.0006  Cellulomonas flavigena DSM 20109  Bacteria  normal  0.0429653  hitchhiker  0.0000864342 
 
 
-
 
NC_014165  Tbis_1609  PaaX family transcriptional regulator  30.39 
 
 		 258 aa  45.1  0.001  Thermobispora bispora DSM 43833  Bacteria  normal  1  normal  1 
 
 
-
 
NC_013159  Svir_19070  phenylacetic acid-responsive transcriptional repressor  27.88 
 
 		 292 aa  43.9  0.003  Saccharomonospora viridis DSM 43017  Bacteria  normal  0.0202563  normal  1 
 
 
-
 
NC_013093  Amir_0787  transcriptional regulator, PaaX family  28.57 
 
 		 268 aa  43.9  0.003  Actinosynnema mirum DSM 43827  Bacteria  normal  1  n/a   
 
 
-
 
NC_013946  Mrub_2629  PaaX family transcriptional regulator  23.11 
 
 		 259 aa  42.7  0.008  Meiothermus ruber DSM 1279  Bacteria  normal  0.495501  normal  1 
 
 
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