More than 300 homologs were found in PanDaTox collection
for query gene TK90_1087 on replicon NC_013889
Organism: Thioalkalivibrio sp. K90mix



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_013889  TK90_1087  short-chain dehydrogenase/reductase SDR  100 
 
 
234 aa  475  1e-133  Thioalkalivibrio sp. K90mix  Bacteria  normal  normal 
 
 
-
 
NC_011989  Avi_0083  C factor  48.7 
 
 
232 aa  207  1e-52  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_008347  Mmar10_1001  short-chain dehydrogenase/reductase SDR  48.11 
 
 
229 aa  199  1.9999999999999998e-50  Maricaulis maris MCS10  Bacteria  normal  normal 
 
 
-
 
NC_010524  Lcho_4369  short-chain dehydrogenase/reductase SDR  50.21 
 
 
251 aa  197  7.999999999999999e-50  Leptothrix cholodnii SP-6  Bacteria  n/a    normal  0.949414 
 
 
-
 
NC_009484  Acry_2762  short-chain dehydrogenase/reductase SDR  53.37 
 
 
233 aa  195  5.000000000000001e-49  Acidiphilium cryptum JF-5  Bacteria  normal  n/a   
 
 
-
 
NC_011662  Tmz1t_3546  short-chain dehydrogenase/reductase SDR  54.23 
 
 
247 aa  188  8e-47  Thauera sp. MZ1T  Bacteria  normal  0.677675  n/a   
 
 
-
 
NC_009379  Pnuc_1606  short-chain dehydrogenase/reductase SDR  42.55 
 
 
231 aa  187  1e-46  Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1  Bacteria  normal  n/a   
 
 
-
 
NC_007494  RSP_3424  hypothetical protein  48.25 
 
 
264 aa  183  3e-45  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  n/a   
 
 
-
 
NC_009050  Rsph17029_3069  short-chain dehydrogenase/reductase SDR  47.58 
 
 
217 aa  181  1e-44  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  normal  0.325387 
 
 
-
 
NC_009050  Rsph17029_3708  short-chain dehydrogenase/reductase SDR  44.93 
 
 
217 aa  178  4.999999999999999e-44  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  0.325747  normal 
 
 
-
 
NC_010510  Mrad2831_5782  short-chain dehydrogenase/reductase SDR  47.44 
 
 
237 aa  178  8e-44  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.175261  normal  0.299031 
 
 
-
 
NC_011757  Mchl_1268  short-chain dehydrogenase/reductase SDR  44.02 
 
 
242 aa  173  1.9999999999999998e-42  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal 
 
 
-
 
NC_009439  Pmen_3104  short-chain dehydrogenase/reductase SDR  45.73 
 
 
236 aa  173  1.9999999999999998e-42  Pseudomonas mendocina ymp  Bacteria  normal  0.329508  normal 
 
 
-
 
NC_010172  Mext_1118  short-chain dehydrogenase/reductase SDR  42.31 
 
 
242 aa  172  5e-42  Methylobacterium extorquens PA1  Bacteria  normal  normal 
 
 
-
 
NC_007794  Saro_2960  short-chain dehydrogenase/reductase SDR  43.28 
 
 
243 aa  171  7.999999999999999e-42  Novosphingobium aromaticivorans DSM 12444  Bacteria  normal  0.320432  n/a   
 
 
-
 
NC_009952  Dshi_0598  short-chain dehydrogenase/reductase SDR  45.13 
 
 
221 aa  170  2e-41  Dinoroseobacter shibae DFL 12  Bacteria  normal  normal 
 
 
-
 
NC_009485  BBta_7188  putative glucose/ribitol dehydrogenase  48.25 
 
 
254 aa  165  5e-40  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.623309  normal 
 
 
-
 
NC_007604  Synpcc7942_2584  short chain dehydrogenase  39.52 
 
 
254 aa  164  9e-40  Synechococcus elongatus PCC 7942  Bacteria  normal  normal  0.567266 
 
 
-
 
NC_008048  Sala_1165  short-chain dehydrogenase/reductase SDR  48.81 
 
 
241 aa  157  2e-37  Sphingopyxis alaskensis RB2256  Bacteria  normal  0.210939  normal  0.103918 
 
 
-
 
NC_007413  Ava_3970  Short-chain dehydrogenase/reductase SDR  35.1 
 
 
256 aa  153  2e-36  Anabaena variabilis ATCC 29413  Bacteria  hitchhiker  0.000000119913  decreased coverage  0.00103281 
 
 
-
 
NC_011729  PCC7424_0828  short-chain dehydrogenase/reductase SDR  33.74 
 
 
256 aa  152  5e-36  Cyanothece sp. PCC 7424  Bacteria  n/a    decreased coverage  0.00155018 
 
 
-
 
NC_013422  Hneap_1304  short-chain dehydrogenase/reductase SDR  38.6 
 
 
233 aa  152  5e-36  Halothiobacillus neapolitanus c2  Bacteria  normal  0.324723  n/a   
 
 
-
 
NC_007204  Psyc_1118  C factor cell-cell signaling protein  37.44 
 
 
259 aa  151  8e-36  Psychrobacter arcticus 273-4  Bacteria  normal  normal  0.452189 
 
 
-
 
NC_007802  Jann_3642  CsgA, Rossman fold oxidoreductase  39.38 
 
 
219 aa  151  8.999999999999999e-36  Jannaschia sp. CCS1  Bacteria  normal  normal  0.14536 
 
 
-
 
NC_011663  Sbal223_0466  C factor cell-cell signaling protein  33.61 
 
 
235 aa  149  5e-35  Shewanella baltica OS223  Bacteria  normal  normal 
 
 
-
 
NC_007969  Pcryo_1301  C factor cell-cell signaling protein  36.92 
 
 
263 aa  147  1.0000000000000001e-34  Psychrobacter cryohalolentis K5  Bacteria  normal  normal 
 
 
-
 
NC_009665  Shew185_0440  C factor cell-cell signaling protein  33.19 
 
 
235 aa  146  2.0000000000000003e-34  Shewanella baltica OS185  Bacteria  normal  n/a   
 
 
-
 
NC_009997  Sbal195_0457  C factor cell-cell signaling protein  33.19 
 
 
235 aa  146  3e-34  Shewanella baltica OS195  Bacteria  normal  normal 
 
 
-
 
NC_009052  Sbal_3873  C factor cell-cell signaling protein  33.19 
 
 
235 aa  145  4.0000000000000006e-34  Shewanella baltica OS155  Bacteria  normal  n/a   
 
 
-
 
NC_009438  Sputcn32_0523  C factor cell-cell signaling protein  32.2 
 
 
235 aa  145  5e-34  Shewanella putrefaciens CN-32  Bacteria  normal  n/a   
 
 
-
 
NC_011675  PHATRDRAFT_12043  predicted protein  39.13 
 
 
260 aa  145  7.0000000000000006e-34  Phaeodactylum tricornutum CCAP 1055/1  Eukaryota  normal  n/a   
 
 
-
 
NC_008044  TM1040_0407  short-chain dehydrogenase/reductase SDR  37.4 
 
 
246 aa  144  9e-34  Ruegeria sp. TM1040  Bacteria  normal  0.904753  normal 
 
 
-
 
NC_013457  VEA_000794  cell-cell signaling protein C-factor  35.44 
 
 
235 aa  140  9.999999999999999e-33  Vibrio sp. Ex25  Bacteria  normal  n/a   
 
 
-
 
NC_009524  PsycPRwf_0074  C factor cell-cell signaling protein  33.06 
 
 
253 aa  140  1.9999999999999998e-32  Psychrobacter sp. PRwf-1  Bacteria  normal  normal 
 
 
-
 
NC_008789  Hhal_0920  short-chain dehydrogenase/reductase SDR  36.18 
 
 
258 aa  140  1.9999999999999998e-32  Halorhodospira halophila SL1  Bacteria  normal  n/a   
 
 
-
 
NC_008322  Shewmr7_0428  C factor cell-cell signaling protein  32.62 
 
 
236 aa  138  8.999999999999999e-32  Shewanella sp. MR-7  Bacteria  normal  normal 
 
 
-
 
NC_008577  Shewana3_3705  C factor cell-cell signaling protein  31.33 
 
 
236 aa  137  1e-31  Shewanella sp. ANA-3  Bacteria  normal  normal 
 
 
-
 
NC_007577  PMT9312_0409  putative short chain dehydrogenase  35.5 
 
 
234 aa  137  2e-31  Prochlorococcus marinus str. MIT 9312  Bacteria  normal  0.547798  n/a   
 
 
-
 
NC_008321  Shewmr4_3527  C factor cell-cell signaling protein  32.19 
 
 
236 aa  135  5e-31  Shewanella sp. MR-4  Bacteria  normal  normal 
 
 
-
 
NC_004347  SO_4170  C factor cell-cell signaling protein  32.19 
 
 
236 aa  134  9.999999999999999e-31  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_009091  P9301_04331  putative short chain dehydrogenase  34.63 
 
 
234 aa  134  9.999999999999999e-31  Prochlorococcus marinus str. MIT 9301  Bacteria  normal  n/a   
 
 
-
 
NC_011138  MADE_03636  oxidoreductase, short-chain dehydrogenase/reductase family protein  33.74 
 
 
241 aa  133  1.9999999999999998e-30  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  0.246288  n/a   
 
 
-
 
NC_010501  PputW619_2067  short-chain dehydrogenase/reductase SDR  35.74 
 
 
248 aa  133  1.9999999999999998e-30  Pseudomonas putida W619  Bacteria  normal  normal 
 
 
-
 
NC_009784  VIBHAR_06691  C factor cell-cell signaling protein  36.84 
 
 
235 aa  133  3e-30  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_008816  A9601_04641  putative short chain dehydrogenase  34.2 
 
 
234 aa  132  6e-30  Prochlorococcus marinus str. AS9601  Bacteria  normal  0.139782  n/a   
 
 
-
 
NC_008740  Maqu_0516  short-chain dehydrogenase/reductase SDR  35.12 
 
 
244 aa  131  1.0000000000000001e-29  Marinobacter aquaeolei VT8  Bacteria  normal  0.543229  n/a   
 
 
-
 
NC_008700  Sama_2496  C factor cell-cell signaling protein  37.75 
 
 
238 aa  130  2.0000000000000002e-29  Shewanella amazonensis SB2B  Bacteria  normal  normal 
 
 
-
 
NC_009457  VC0395_A1411  C factor cell-cell signaling protein  41.14 
 
 
235 aa  129  3e-29  Vibrio cholerae O395  Bacteria  normal  n/a   
 
 
-
 
NC_009355  OSTLU_40154  predicted protein  35.32 
 
 
282 aa  129  3e-29  Ostreococcus lucimarinus CCE9901  Eukaryota  normal  0.529098  n/a   
 
 
-
 
NC_007516  Syncc9605_1351  CsgA C-factor signaling protein  35.93 
 
 
242 aa  129  4.0000000000000003e-29  Synechococcus sp. CC9605  Bacteria  normal  normal  0.430394 
 
 
-
 
NC_008817  P9515_04751  putative short chain dehydrogenase  34.35 
 
 
234 aa  128  7.000000000000001e-29  Prochlorococcus marinus str. MIT 9515  Bacteria  normal  n/a   
 
 
-
 
NC_002947  PP_2727  C-factor, putative  35.04 
 
 
256 aa  124  1e-27  Pseudomonas putida KT2440  Bacteria  normal  normal 
 
 
-
 
NC_007335  PMN2A_0395  putative short chain dehydrogenase  32.03 
 
 
239 aa  123  2e-27  Prochlorococcus marinus str. NATL2A  Bacteria  normal  0.518242  n/a   
 
 
-
 
NC_003910  CPS_0516  short chain dehydrogenase/reductase family oxidoreductase  36.25 
 
 
244 aa  123  3e-27  Colwellia psychrerythraea 34H  Bacteria  normal  0.567639  n/a   
 
 
-
 
NC_007513  Syncc9902_1127  CsgA C-factor signaling protein  35.06 
 
 
242 aa  122  4e-27  Synechococcus sp. CC9902  Bacteria  normal  0.596754  n/a   
 
 
-
 
NC_008819  NATL1_10851  hypothetical protein  32.03 
 
 
239 aa  122  4e-27  Prochlorococcus marinus str. NATL1A  Bacteria  normal  0.77001  hitchhiker  0.00492189 
 
 
-
 
NC_009512  Pput_3027  short-chain dehydrogenase/reductase SDR  35.43 
 
 
256 aa  121  8e-27  Pseudomonas putida F1  Bacteria  normal  normal 
 
 
-
 
NC_011312  VSAL_I1495  hypothetical protein  29.49 
 
 
235 aa  120  1.9999999999999998e-26  Aliivibrio salmonicida LFI1238  Bacteria  normal  0.0535918  n/a   
 
 
-
 
NC_010506  Swoo_1370  short chain dehydrogenase/reductase family oxidoreductase  37.5 
 
 
244 aa  120  1.9999999999999998e-26  Shewanella woodyi ATCC 51908  Bacteria  normal  hitchhiker  0.00053565 
 
 
-
 
NC_008228  Patl_4061  short chain dehydrogenase/reductase family oxidoreductase  30.56 
 
 
253 aa  117  9.999999999999999e-26  Pseudoalteromonas atlantica T6c  Bacteria  normal  0.185996  n/a   
 
 
-
 
NC_009654  Mmwyl1_0930  oxidoreductase, short-chain dehydrogenase/reductase family protein  30.34 
 
 
241 aa  114  2.0000000000000002e-24  Marinomonas sp. MWYL1  Bacteria  normal  normal 
 
 
-
 
NC_007005  Psyr_0120  Short-chain dehydrogenase/reductase SDR  36.56 
 
 
256 aa  112  5e-24  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal  0.65432 
 
 
-
 
NC_004578  PSPTO_0667  oxidoreductase, short-chain dehydrogenase/reductase family  35.48 
 
 
256 aa  111  1.0000000000000001e-23  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_008709  Ping_2109  oxidoreductase, short-chain dehydrogenase/reductase family protein  29.1 
 
 
252 aa  109  3e-23  Psychromonas ingrahamii 37  Bacteria  normal  0.334946  normal  0.249661 
 
 
-
 
NC_008345  Sfri_3165  hypothetical protein  36.08 
 
 
294 aa  108  5e-23  Shewanella frigidimarina NCIMB 400  Bacteria  normal  n/a   
 
 
-
 
BN001305  ANIA_05700  conserved hypothetical protein  36.42 
 
 
199 aa  87.8  1e-16  Aspergillus nidulans FGSC A4  Eukaryota  normal  normal  0.328433 
 
 
-
 
NC_006685  CNC01180  Rossman fold oxidoreductase, putative  29.79 
 
 
290 aa  88.2  1e-16  Cryptococcus neoformans var. neoformans JEC21  Eukaryota  normal  n/a   
 
 
-
 
NC_007577  PMT9312_0705  short-chain dehydrogenase/reductase  30.61 
 
 
221 aa  86.3  4e-16  Prochlorococcus marinus str. MIT 9312  Bacteria  normal  0.096337  n/a   
 
 
-
 
NC_008816  A9601_07571  short-chain dehydrogenase/reductase  29.59 
 
 
221 aa  84  0.000000000000002  Prochlorococcus marinus str. AS9601  Bacteria  normal  n/a   
 
 
-
 
NC_009091  P9301_07551  short-chain dehydrogenase/reductase  29.59 
 
 
221 aa  83.6  0.000000000000002  Prochlorococcus marinus str. MIT 9301  Bacteria  normal  n/a   
 
 
-
 
NC_009092  Shew_2008  short-chain dehydrogenase/reductase SDR  26.14 
 
 
231 aa  84  0.000000000000002  Shewanella loihica PV-4  Bacteria  normal  normal  0.110275 
 
 
-
 
NC_008345  Sfri_2097  short-chain dehydrogenase/reductase SDR  30.69 
 
 
235 aa  83.6  0.000000000000002  Shewanella frigidimarina NCIMB 400  Bacteria  normal  n/a   
 
 
-
 
NC_009901  Spea_2100  short-chain dehydrogenase/reductase SDR  27.92 
 
 
231 aa  82.4  0.000000000000005  Shewanella pealeana ATCC 700345  Bacteria  normal  0.115059  n/a   
 
 
-
 
NC_007614  Nmul_A0735  Short-chain dehydrogenase/reductase SDR  26.64 
 
 
233 aa  82.4  0.000000000000006  Nitrosospira multiformis ATCC 25196  Bacteria  normal  0.965519  n/a   
 
 
-
 
NC_008820  P9303_07591  Short-chain dehydrogenase/reductase (SDR) superfamily protein  33.66 
 
 
221 aa  81.6  0.00000000000001  Prochlorococcus marinus str. MIT 9303  Bacteria  n/a    normal  0.122507 
 
 
-
 
NC_007513  Syncc9902_0975  short-chain dehydrogenase/reductase  30.9 
 
 
221 aa  79.7  0.00000000000003  Synechococcus sp. CC9902  Bacteria  normal  0.264766  n/a   
 
 
-
 
NC_009976  P9211_14521  Short-chain dehydrogenase of various substrate specificities  27.9 
 
 
221 aa  79.7  0.00000000000004  Prochlorococcus marinus str. MIT 9211  Bacteria  normal  hitchhiker  0.00861762 
 
 
-
 
NC_009727  CBUD_1086  short chain dehydrogenase  29.53 
 
 
232 aa  79.7  0.00000000000004  Coxiella burnetii Dugway 5J108-111  Bacteria  normal  n/a   
 
 
-
 
NC_010117  COXBURSA331_A0979  short chain dehydrogenase/reductase family oxidoreductase  29.53 
 
 
232 aa  79  0.00000000000006  Coxiella burnetii RSA 331  Bacteria  normal  n/a   
 
 
-
 
NC_008819  NATL1_01071  Short-chain dehydrogenases of various substrate specificities  27.04 
 
 
221 aa  77.8  0.0000000000001  Prochlorococcus marinus str. NATL1A  Bacteria  normal  0.315767  normal  0.657338 
 
 
-
 
NC_007335  PMN2A_1408  short-chain dehydrogenase/reductase family protein  27.04 
 
 
224 aa  77.4  0.0000000000002  Prochlorococcus marinus str. NATL2A  Bacteria  normal  0.417919  n/a   
 
 
-
 
NC_008740  Maqu_3635  short-chain dehydrogenase/reductase SDR  28.51 
 
 
223 aa  76.6  0.0000000000003  Marinobacter aquaeolei VT8  Bacteria  normal  n/a   
 
 
-
 
NC_011901  Tgr7_0658  short-chain dehydrogenase/reductase SDR  30.46 
 
 
233 aa  76.6  0.0000000000003  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  n/a   
 
 
-
 
NC_013456  VEA_002919  short chain dehydrogenase  30.11 
 
 
229 aa  76.3  0.0000000000004  Vibrio sp. Ex25  Bacteria  normal  n/a   
 
 
-
 
NC_007643  Rru_A1945  Short-chain dehydrogenase/reductase SDR  29.06 
 
 
227 aa  76.3  0.0000000000004  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  n/a   
 
 
-
 
NC_007908  Rfer_2437  short-chain dehydrogenase/reductase SDR  35.11 
 
 
231 aa  76.3  0.0000000000004  Rhodoferax ferrireducens T118  Bacteria  hitchhiker  0.0036356  n/a   
 
 
-
 
NC_008817  P9515_08791  short-chain dehydrogenase/reductase  29.02 
 
 
221 aa  76.3  0.0000000000004  Prochlorococcus marinus str. MIT 9515  Bacteria  normal  n/a   
 
 
-
 
NC_007947  Mfla_1267  short-chain dehydrogenase/reductase SDR  26.03 
 
 
232 aa  75.5  0.0000000000006  Methylobacillus flagellatus KT  Bacteria  normal  normal  0.139748 
 
 
-
 
NC_008700  Sama_1598  putative oxidoreductase protein  33.08 
 
 
229 aa  73.2  0.000000000003  Shewanella amazonensis SB2B  Bacteria  normal  0.299801  normal 
 
 
-
 
NC_010506  Swoo_2386  short-chain dehydrogenase/reductase SDR  29.52 
 
 
231 aa  73.2  0.000000000003  Shewanella woodyi ATCC 51908  Bacteria  normal  normal  0.927324 
 
 
-
 
NC_011138  MADE_01860  Short chain dehydrogenase family protein  28.81 
 
 
219 aa  72.4  0.000000000005  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  0.203928  n/a   
 
 
-
 
NC_007516  Syncc9605_1087  short-chain dehydrogenase/reductase  32.62 
 
 
221 aa  71.6  0.000000000009  Synechococcus sp. CC9605  Bacteria  normal  0.236682  normal 
 
 
-
 
NC_007912  Sde_0124  short chain dehydrogenase family protein  29.18 
 
 
219 aa  71.6  0.000000000009  Saccharophagus degradans 2-40  Bacteria  normal  0.635136  normal 
 
 
-
 
NC_009831  Ssed_2239  short chain dehydrogenase  31.3 
 
 
231 aa  71.2  0.00000000001  Shewanella sediminis HAW-EB3  Bacteria  normal  normal 
 
 
-
 
NC_010172  Mext_0860  short-chain dehydrogenase/reductase SDR  31.09 
 
 
228 aa  71.2  0.00000000001  Methylobacterium extorquens PA1  Bacteria  normal  0.122274  normal  0.0405726 
 
 
-
 
NC_008347  Mmar10_1893  short-chain dehydrogenase/reductase SDR  34.29 
 
 
231 aa  70.9  0.00000000002  Maricaulis maris MCS10  Bacteria  normal  normal  0.909495 
 
 
-
 
NC_011757  Mchl_0819  short-chain dehydrogenase/reductase SDR  31.09 
 
 
228 aa  70.1  0.00000000003  Methylobacterium chloromethanicum CM4  Bacteria  normal  0.176111  normal  0.198058 
 
 
-
 
NC_011884  Cyan7425_0352  short-chain dehydrogenase/reductase SDR  29.41 
 
 
239 aa  69.7  0.00000000004  Cyanothece sp. PCC 7425  Bacteria  normal  normal  0.512494 
 
 
-
 
NC_003910  CPS_4308  short chain dehydrogenase/reductase family oxidoreductase  25.32 
 
 
230 aa  68.9  0.00000000006  Colwellia psychrerythraea 34H  Bacteria  normal  n/a   
 
 
-
 
NC_010622  Bphy_0177  short chain dehydrogenase  30.92 
 
 
225 aa  68.9  0.00000000007  Burkholderia phymatum STM815  Bacteria  normal  normal 
 
 
-
 
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