More than 300 homologs were found in PanDaTox collection
for query gene TDE2209 on replicon NC_002967
Organism: Treponema denticola ATCC 35405



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_002967  TDE2209  CarB family protein  100 
 
 
543 aa  1110    Treponema denticola ATCC 35405  Bacteria  normal  0.304362  n/a   
 
 
-
 
NC_014150  Bmur_2737  ATP-dependent carboxylate-amine ligase domain protein ATP-grasp  40.54 
 
 
723 aa  283  8.000000000000001e-75  Brachyspira murdochii DSM 12563  Bacteria  normal  n/a   
 
 
-
 
NC_007517  Gmet_0449  putative glycolate oxidase  34.53 
 
 
404 aa  196  1e-48  Geobacter metallireducens GS-15  Bacteria  normal  normal 
 
 
-
 
NC_013171  Apre_1270  protein of unknown function DUF201  32.44 
 
 
399 aa  185  2.0000000000000003e-45  Anaerococcus prevotii DSM 20548  Bacteria  normal  0.964812  n/a   
 
 
-
 
NC_013223  Dret_0619  phosphoribosylglycinamide synthetase  33.17 
 
 
410 aa  184  5.0000000000000004e-45  Desulfohalobium retbaense DSM 5692  Bacteria  normal  0.241949  hitchhiker  0.00233057 
 
 
-
 
NC_007519  Dde_0418  hypothetical protein  33.25 
 
 
411 aa  179  1e-43  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  normal  n/a   
 
 
-
 
NC_011663  Sbal223_1401  protein of unknown function DUF201  30.75 
 
 
409 aa  177  5e-43  Shewanella baltica OS223  Bacteria  normal  normal 
 
 
-
 
NC_004347  SO_3265  hypothetical protein  29.88 
 
 
412 aa  167  5.9999999999999996e-40  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_007498  Pcar_1119  biotin carboxylase  30.5 
 
 
411 aa  161  2e-38  Pelobacter carbinolicus DSM 2380  Bacteria  normal  n/a   
 
 
-
 
NC_013204  Elen_2428  protein of unknown function DUF201  31.33 
 
 
402 aa  157  4e-37  Eggerthella lenta DSM 2243  Bacteria  normal  0.281403  normal 
 
 
-
 
NC_009052  Sbal_2959  phosphoribosylglycinamide synthetase  33.24 
 
 
405 aa  157  5.0000000000000005e-37  Shewanella baltica OS155  Bacteria  normal  n/a   
 
 
-
 
NC_013159  Svir_37420  biotin carboxylase  29.09 
 
 
405 aa  115  2.0000000000000002e-24  Saccharomonospora viridis DSM 43017  Bacteria  normal  normal  0.442231 
 
 
-
 
NC_008322  Shewmr7_1388  hypothetical protein  27.51 
 
 
395 aa  103  6e-21  Shewanella sp. MR-7  Bacteria  normal  normal  0.0314212 
 
 
-
 
NC_013165  Shel_14410  carbamoylphosphate synthase large subunit  29.36 
 
 
423 aa  102  2e-20  Slackia heliotrinireducens DSM 20476  Bacteria  normal  normal 
 
 
-
 
NC_008740  Maqu_2595  putative carbamoyl-phosphate-synthetase  28.48 
 
 
398 aa  100  5e-20  Marinobacter aquaeolei VT8  Bacteria  normal  0.605395  n/a   
 
 
-
 
NC_009953  Sare_0573  phosphoribosylglycinamide synthetase  28.32 
 
 
420 aa  96.7  1e-18  Salinispora arenicola CNS-205  Bacteria  normal  0.23534  normal  0.22349 
 
 
-
 
NC_013206  Aaci_2987  phosphoribosylglycinamide synthetase  28.22 
 
 
410 aa  95.9  2e-18  Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria  unclonable  0.0000000000875543  n/a   
 
 
-
 
NC_013411  GYMC61_1929  ATP-dependent carboxylate-amine ligase domain protein ATP-grasp  26.6 
 
 
411 aa  94.4  5e-18  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_013171  Apre_1268  phosphoribosylglycinamide synthetase  31.5 
 
 
400 aa  91.7  3e-17  Anaerococcus prevotii DSM 20548  Bacteria  normal  0.584392  n/a   
 
 
-
 
NC_013093  Amir_4500  Cysteine synthase  25.18 
 
 
756 aa  89.7  1e-16  Actinosynnema mirum DSM 43827  Bacteria  normal  0.632569  n/a   
 
 
-
 
NC_008687  Pden_3552  ATP-dependent carboxylate-amine ligase domain-containing protein  29.64 
 
 
373 aa  89.4  1e-16  Paracoccus denitrificans PD1222  Bacteria  normal  0.138111  normal  0.272734 
 
 
-
 
NC_013131  Caci_3759  protein of unknown function DUF201  30.84 
 
 
425 aa  87.8  4e-16  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_005707  BCE_A0170  phosphoribosylglycinamide synthetase ATP-grasp domain-containing protein  25 
 
 
407 aa  85.9  0.000000000000002  Bacillus cereus ATCC 10987  Bacteria  normal  n/a   
 
 
-
 
NC_011777  BCAH820_B0292  phosphoribosylglycinamide synthetase, ATP-grasp  25 
 
 
407 aa  85.9  0.000000000000002  Bacillus cereus AH820  Bacteria  n/a    normal 
 
 
-
 
NC_009675  Anae109_1432  hypothetical protein  27.23 
 
 
424 aa  85.9  0.000000000000002  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  0.502147  normal 
 
 
-
 
NC_011891  A2cp1_1518  protein of unknown function DUF201  27.57 
 
 
424 aa  84.7  0.000000000000004  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  n/a   
 
 
-
 
NC_013411  GYMC61_0754  protein of unknown function DUF201  24.59 
 
 
409 aa  84.7  0.000000000000004  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_011145  AnaeK_1423  protein of unknown function DUF201  27.57 
 
 
424 aa  84.3  0.000000000000005  Anaeromyxobacter sp. K  Bacteria  normal  0.369206  n/a   
 
 
-
 
NC_013159  Svir_33390  biotin carboxylase  23.71 
 
 
428 aa  82.8  0.00000000000001  Saccharomonospora viridis DSM 43017  Bacteria  normal  normal  0.465269 
 
 
-
 
NC_007651  BTH_I1971  argininosuccinate lyase  26.41 
 
 
891 aa  82.4  0.00000000000002  Burkholderia thailandensis E264  Bacteria  normal  n/a   
 
 
-
 
NC_008836  BMA10229_A3192  argininosuccinate lyase  26.41 
 
 
924 aa  81.6  0.00000000000003  Burkholderia mallei NCTC 10229  Bacteria  normal  0.655648  n/a   
 
 
-
 
NC_011831  Cagg_2251  phosphoribosylglycinamide synthetase  27.81 
 
 
418 aa  81.6  0.00000000000004  Chloroflexus aggregans DSM 9485  Bacteria  normal  hitchhiker  0.000000511987 
 
 
-
 
NC_009080  BMA10247_1396  argininosuccinate lyase  26.18 
 
 
926 aa  80.9  0.00000000000006  Burkholderia mallei NCTC 10247  Bacteria  normal  n/a   
 
 
-
 
NC_007760  Adeh_2440  biotin carboxylase-like  27.03 
 
 
424 aa  80.5  0.00000000000007  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  0.459774  n/a   
 
 
-
 
NC_013440  Hoch_6149  hypothetical protein  29.18 
 
 
441 aa  80.5  0.00000000000007  Haliangium ochraceum DSM 14365  Bacteria  normal  normal  0.669475 
 
 
-
 
NC_007434  BURPS1710b_2646  argininosuccinate lyase  26.16 
 
 
904 aa  80.5  0.00000000000008  Burkholderia pseudomallei 1710b  Bacteria  normal  n/a   
 
 
-
 
NC_012793  GWCH70_1047  carbamoyl phosphate synthase large subunit  23.24 
 
 
1065 aa  80.5  0.00000000000008  Geobacillus sp. WCH70  Bacteria  normal  n/a   
 
 
-
 
NC_009074  BURPS668_2507  argininosuccinate lyase  25.94 
 
 
912 aa  79.3  0.0000000000001  Burkholderia pseudomallei 668  Bacteria  normal  n/a   
 
 
-
 
NC_009076  BURPS1106A_2560  argininosuccinate lyase  25.74 
 
 
904 aa  79.3  0.0000000000002  Burkholderia pseudomallei 1106a  Bacteria  normal  n/a   
 
 
-
 
NC_008785  BMASAVP1_A2122  argininosuccinate lyase  26.41 
 
 
894 aa  77.8  0.0000000000005  Burkholderia mallei SAVP1  Bacteria  normal  n/a   
 
 
-
 
NC_006348  BMA1620  argininosuccinate lyase  26.18 
 
 
896 aa  77  0.0000000000008  Burkholderia mallei ATCC 23344  Bacteria  normal  n/a   
 
 
-
 
NC_013093  Amir_4648  protein of unknown function DUF201  27.66 
 
 
404 aa  74.7  0.000000000004  Actinosynnema mirum DSM 43827  Bacteria  normal  0.896666  n/a   
 
 
-
 
NC_013093  Amir_2663  ATP-dependent carboxylate-amine ligase domain protein ATP-grasp  26.07 
 
 
413 aa  74.7  0.000000000004  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_013525  Tter_1164  protein of unknown function DUF201  23.29 
 
 
437 aa  73.9  0.000000000007  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_008463  PA14_62910  carbamoyl phosphate synthase large subunit  25.66 
 
 
1073 aa  73.6  0.000000000009  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal 
 
 
-
 
NC_009656  PSPA7_5476  carbamoyl phosphate synthase large subunit  25.66 
 
 
1073 aa  73.6  0.000000000009  Pseudomonas aeruginosa PA7  Bacteria  normal  0.783479  n/a   
 
 
-
 
NC_009674  Bcer98_2535  carbamoyl phosphate synthase large subunit  23.41 
 
 
1072 aa  72.4  0.00000000002  Bacillus cytotoxicus NVH 391-98  Bacteria  normal  0.900385  n/a   
 
 
-
 
NC_010184  BcerKBAB4_3713  carbamoyl phosphate synthase large subunit  26.34 
 
 
1072 aa  71.6  0.00000000004  Bacillus weihenstephanensis KBAB4  Bacteria  normal  n/a   
 
 
-
 
NC_009439  Pmen_3620  carbamoyl phosphate synthase large subunit  24.42 
 
 
1073 aa  71.2  0.00000000004  Pseudomonas mendocina ymp  Bacteria  normal  0.830394  normal 
 
 
-
 
NC_007912  Sde_2728  carbamoyl phosphate synthase large subunit  23.43 
 
 
1077 aa  71.6  0.00000000004  Saccharophagus degradans 2-40  Bacteria  normal  0.523784  normal 
 
 
-
 
NC_012560  Avin_42930  carbamoyl phosphate synthase large subunit  24.09 
 
 
1073 aa  71.2  0.00000000004  Azotobacter vinelandii DJ  Bacteria  normal  n/a   
 
 
-
 
NC_004578  PSPTO_4501  carbamoyl-phosphate synthase, large subunit  24.09 
 
 
1073 aa  71.2  0.00000000005  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_011658  BCAH187_A3935  carbamoyl phosphate synthase large subunit  23.55 
 
 
1072 aa  70.9  0.00000000006  Bacillus cereus AH187  Bacteria  normal  0.144651  n/a   
 
 
-
 
NC_009953  Sare_2144  phosphoribosylglycinamide synthetase  27.23 
 
 
416 aa  70.9  0.00000000006  Salinispora arenicola CNS-205  Bacteria  normal  normal  0.0250211 
 
 
-
 
NC_006274  BCZK3645  carbamoyl phosphate synthase large subunit  23.55 
 
 
1072 aa  70.9  0.00000000006  Bacillus cereus E33L  Bacteria  normal  n/a   
 
 
-
 
NC_011773  BCAH820_3900  carbamoyl phosphate synthase large subunit  23.55 
 
 
1072 aa  70.9  0.00000000006  Bacillus cereus AH820  Bacteria  n/a    hitchhiker  0.000000425405 
 
 
-
 
NC_003909  BCE_3931  carbamoyl phosphate synthase large subunit  24.51 
 
 
1072 aa  70.5  0.00000000007  Bacillus cereus ATCC 10987  Bacteria  normal  n/a   
 
 
-
 
NC_005945  BAS3737  carbamoyl phosphate synthase large subunit  23.55 
 
 
1072 aa  70.5  0.00000000007  Bacillus anthracis str. Sterne  Bacteria  normal  n/a   
 
 
-
 
NC_011725  BCB4264_A3984  carbamoyl phosphate synthase large subunit  23.55 
 
 
1072 aa  70.5  0.00000000007  Bacillus cereus B4264  Bacteria  normal  n/a   
 
 
-
 
NC_007434  BURPS1710b_2158  argininosuccinate lyase  27.64 
 
 
914 aa  70.5  0.00000000007  Burkholderia pseudomallei 1710b  Bacteria  normal  n/a   
 
 
-
 
NC_007530  GBAA_4025  carbamoyl phosphate synthase large subunit  23.55 
 
 
1072 aa  70.5  0.00000000007  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  n/a   
 
 
-
 
NC_009074  BURPS668_2002  argininosuccinate lyase  27.64 
 
 
900 aa  70.5  0.00000000007  Burkholderia pseudomallei 668  Bacteria  normal  0.848902  n/a   
 
 
-
 
NC_009953  Sare_2148  hypothetical protein  24.81 
 
 
414 aa  70.5  0.00000000007  Salinispora arenicola CNS-205  Bacteria  normal  normal  0.149546 
 
 
-
 
NC_005957  BT9727_3628  carbamoyl phosphate synthase large subunit  24.51 
 
 
1072 aa  70.5  0.00000000008  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  normal  n/a   
 
 
-
 
NC_007005  Psyr_4191  carbamoyl phosphate synthase large subunit  24.09 
 
 
1073 aa  70.5  0.00000000009  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  0.725714  normal 
 
 
-
 
NC_010730  SYO3AOP1_0583  MGS domain protein  25.6 
 
 
530 aa  70.1  0.0000000001  Sulfurihydrogenibium sp. YO3AOP1  Bacteria  normal  0.774187  n/a   
 
 
-
 
NC_013456  VEA_004478  carbamoyl-phosphate synthase large chain  23.18 
 
 
1077 aa  69.7  0.0000000001  Vibrio sp. Ex25  Bacteria  normal  n/a   
 
 
-
 
NC_007760  Adeh_1729  carbamoyl phosphate synthase large subunit  26.44 
 
 
1077 aa  70.1  0.0000000001  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  n/a   
 
 
-
 
NC_009076  BURPS1106A_2022  argininosuccinate lyase  26.18 
 
 
900 aa  70.1  0.0000000001  Burkholderia pseudomallei 1106a  Bacteria  normal  0.10658  n/a   
 
 
-
 
NC_011145  AnaeK_2118  carbamoyl phosphate synthase large subunit  26.14 
 
 
1077 aa  69.7  0.0000000001  Anaeromyxobacter sp. K  Bacteria  normal  n/a   
 
 
-
 
NC_011772  BCG9842_B1257  carbamoyl phosphate synthase large subunit  23.55 
 
 
1072 aa  69.7  0.0000000001  Bacillus cereus G9842  Bacteria  normal  normal 
 
 
-
 
NC_011891  A2cp1_2208  carbamoyl phosphate synthase large subunit  26.14 
 
 
1077 aa  69.7  0.0000000001  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  n/a   
 
 
-
 
NC_011312  VSAL_I0586  carbamoyl phosphate synthase large subunit  23.21 
 
 
1076 aa  69.3  0.0000000002  Aliivibrio salmonicida LFI1238  Bacteria  normal  0.221423  n/a   
 
 
-
 
NC_009654  Mmwyl1_4034  carbamoyl-phosphate synthase, large subunit  21.93 
 
 
1071 aa  69.3  0.0000000002  Marinomonas sp. MWYL1  Bacteria  hitchhiker  0.00188727  normal 
 
 
-
 
NC_013411  GYMC61_1917  carbamoyl phosphate synthase large subunit  25.19 
 
 
1065 aa  68.9  0.0000000002  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_007492  Pfl01_0767  carbamoyl phosphate synthase large subunit  23.76 
 
 
1073 aa  69.3  0.0000000002  Pseudomonas fluorescens Pf0-1  Bacteria  normal  0.256868  normal  0.1584 
 
 
-
 
NC_008709  Ping_0897  carbamoyl phosphate synthase large subunit  22.26 
 
 
1076 aa  68.2  0.0000000003  Psychromonas ingrahamii 37  Bacteria  normal  normal  0.641004 
 
 
-
 
NC_009635  Maeo_0045  carbamoyl-phosphate synthase L chain ATP-binding  23.94 
 
 
604 aa  68.2  0.0000000004  Methanococcus aeolicus Nankai-3  Archaea  normal  0.308823  n/a   
 
 
-
 
NC_008346  Swol_1281  carbamoyl-phosphate synthase, large subunit  24.02 
 
 
1074 aa  68.2  0.0000000004  Syntrophomonas wolfei subsp. wolfei str. Goettingen  Bacteria  normal  n/a   
 
 
-
 
NC_010424  Daud_1302  carbamoyl-phosphate synthase, large subunit  24.36 
 
 
1082 aa  67.8  0.0000000004  Candidatus Desulforudis audaxviator MP104C  Bacteria  normal  n/a   
 
 
-
 
NC_013721  HMPREF0424_0917  carbamoyl-phosphate synthase, large subunit  25.39 
 
 
1131 aa  67.8  0.0000000005  Gardnerella vaginalis 409-05  Bacteria  n/a    normal 
 
 
-
 
NC_009972  Haur_0060  carbamoyl-phosphate synthase, large subunit  24.69 
 
 
1065 aa  67.8  0.0000000005  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  n/a   
 
 
-
 
NC_009457  VC0395_A1967  carbamoyl phosphate synthase large subunit  21.77 
 
 
1076 aa  67.8  0.0000000005  Vibrio cholerae O395  Bacteria  normal  n/a   
 
 
-
 
NC_007575  Suden_1467  carbamoyl phosphate synthase large subunit  23.36 
 
 
1085 aa  67.4  0.0000000007  Sulfurimonas denitrificans DSM 1251  Bacteria  normal  n/a   
 
 
-
 
NC_007204  Psyc_0814  carbamoyl-phosphate synthase large subunit  22.98 
 
 
1084 aa  67  0.0000000009  Psychrobacter arcticus 273-4  Bacteria  normal  0.253705  normal  0.0427985 
 
 
-
 
NC_009783  VIBHAR_00913  carbamoyl phosphate synthase large subunit  22.87 
 
 
1077 aa  66.6  0.000000001  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_006368  lpp2678  carbamoyl-phosphate synthase large subunit  24.06 
 
 
1067 aa  66.2  0.000000001  Legionella pneumophila str. Paris  Bacteria  n/a    n/a   
 
 
-
 
NC_006369  lpl2550  carbamoyl-phosphate synthase large subunit  24.06 
 
 
1067 aa  66.6  0.000000001  Legionella pneumophila str. Lens  Bacteria  n/a    n/a   
 
 
-
 
NC_012034  Athe_1541  carbamoyl-phosphate synthase, large subunit  28.57 
 
 
1077 aa  66.6  0.000000001  Anaerocellum thermophilum DSM 6725  Bacteria  normal  n/a   
 
 
-
 
NC_003296  RS03057  hypothetical protein  27.31 
 
 
449 aa  65.5  0.000000002  Ralstonia solanacearum GMI1000  Bacteria  normal  0.450613  normal 
 
 
-
 
NC_009675  Anae109_2072  carbamoyl phosphate synthase large subunit  26.06 
 
 
1083 aa  65.9  0.000000002  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  normal  0.471557 
 
 
-
 
NC_010627  Bphy_7725  hypothetical protein  29.73 
 
 
411 aa  66.2  0.000000002  Burkholderia phymatum STM815  Bacteria  normal  0.10668  normal 
 
 
-
 
NC_008530  LGAS_1087  carbamoyl phosphate synthase large subunit  19.94 
 
 
1062 aa  65.9  0.000000002  Lactobacillus gasseri ATCC 33323  Bacteria  normal  normal 
 
 
-
 
NC_008531  LEUM_1207  carbamoyl-phosphate synthase large subunit  22.16 
 
 
1059 aa  65.5  0.000000002  Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293  Bacteria  normal  n/a   
 
 
-
 
NC_008609  Ppro_2022  acetyl-CoA carboxylase, biotin carboxylase  32.28 
 
 
446 aa  66.2  0.000000002  Pelobacter propionicus DSM 2379  Bacteria  normal  0.0711095  n/a   
 
 
-
 
NC_013525  Tter_1370  carbamoyl-phosphate synthase, large subunit  24.64 
 
 
1095 aa  65.9  0.000000002  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_009012  Cthe_1868  carbamoyl-phosphate synthase large subunit  23.41 
 
 
1067 aa  65.9  0.000000002  Clostridium thermocellum ATCC 27405  Bacteria  normal  n/a   
 
 
-
 
NC_011206  Lferr_0789  carbamoyl-phosphate synthase, large subunit  24.69 
 
 
1079 aa  65.5  0.000000003  Acidithiobacillus ferrooxidans ATCC 53993  Bacteria  normal  normal 
 
 
-
 
NC_011831  Cagg_2456  carbamoyl-phosphate synthase, large subunit  24.69 
 
 
1096 aa  65.5  0.000000003  Chloroflexus aggregans DSM 9485  Bacteria  normal  normal 
 
 
-
 
NC_007969  Pcryo_0829  carbamoyl-phosphate synthase, large subunit  23.51 
 
 
1112 aa  65.5  0.000000003  Psychrobacter cryohalolentis K5  Bacteria  normal  normal 
 
 
-
 
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