16 homologs were found in PanDaTox collection
for query gene TDE0078 on replicon NC_002967
Organism: Treponema denticola ATCC 35405



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_002967  TDE0078  glycine reductase complex selenoprotein GrdB1  100 
 
 
443 aa  914    Treponema denticola ATCC 35405  Bacteria  normal  n/a   
 
 
-
 
NC_010718  Nther_0474  selenoprotein B, glycine/betaine/sarcosine/D-proline reductase family  43.68 
 
 
435 aa  375  1e-102  Natranaerobius thermophilus JW/NM-WN-LF  Bacteria  normal  normal 
 
 
-
 
NC_013165  Shel_25230  glycine reductase, selenoprotein B  45.85 
 
 
437 aa  368  1e-100  Slackia heliotrinireducens DSM 20476  Bacteria  hitchhiker  0.00287669  normal  0.0219994 
 
 
-
 
NC_013522  Taci_1136  selenoprotein B, glycine/betaine/sarcosine/D- proline reductase family  43.68 
 
 
436 aa  367  1e-100  Thermanaerovibrio acidaminovorans DSM 6589  Bacteria  normal  n/a   
 
 
-
 
NC_011883  Ddes_0113  selenoprotein B, glycine/betaine/sarcosine/D-proline reductase family  43.12 
 
 
434 aa  345  6e-94  Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774  Bacteria  normal  n/a   
 
 
-
 
NC_002967  TDE2119  glycine reductase complex selenoprotein GrdB2  42.79 
 
 
431 aa  340  2.9999999999999998e-92  Treponema denticola ATCC 35405  Bacteria  normal  n/a   
 
 
-
 
NC_013165  Shel_21500  selenoprotein B, glycine/betaine/sarcosine/D-proline reductase family  42.76 
 
 
431 aa  335  7e-91  Slackia heliotrinireducens DSM 20476  Bacteria  normal  0.206379  normal 
 
 
-
 
NC_013165  Shel_25400  selenoprotein B, glycine/betaine/sarcosine/D-proline reductase family  40.99 
 
 
442 aa  325  1e-87  Slackia heliotrinireducens DSM 20476  Bacteria  hitchhiker  0.000639897  normal  0.348983 
 
 
-
 
NC_014150  Bmur_2725  selenoprotein B, glycine/betaine/sarcosine/D- proline reductase family  41.88 
 
 
345 aa  288  1e-76  Brachyspira murdochii DSM 12563  Bacteria  normal  n/a   
 
 
-
 
NC_014150  Bmur_2726  selenoprotein B, glycine/betaine/sarcosine/D- proline reductase family  46.67 
 
 
77 aa  63.2  0.000000008  Brachyspira murdochii DSM 12563  Bacteria  normal  n/a   
 
 
-
 
NC_009485  BBta_4763  hypothetical protein  27.6 
 
 
308 aa  55.1  0.000003  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal  0.255094 
 
 
-
 
NC_008148  Rxyl_2192  putative reductase  24.59 
 
 
211 aa  52.4  0.00001  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  0.181535  n/a   
 
 
-
 
NC_010718  Nther_2712  Glycine/sarcosine/betaine reductase complex protein B alpha and beta subunits  28.49 
 
 
552 aa  52  0.00002  Natranaerobius thermophilus JW/NM-WN-LF  Bacteria  normal  0.640748  normal 
 
 
-
 
NC_013440  Hoch_1982  hypothetical protein  28.35 
 
 
160 aa  50.4  0.00005  Haliangium ochraceum DSM 14365  Bacteria  normal  0.200632  normal  0.0360501 
 
 
-
 
NC_007958  RPD_3052  hypothetical protein  25.12 
 
 
310 aa  46.6  0.001  Rhodopseudomonas palustris BisB5  Bacteria  normal  normal 
 
 
-
 
NC_008530  LGAS_1432  glycine/sarcosine/betaine reductase selenoprotein B  27.87 
 
 
174 aa  45.1  0.003  Lactobacillus gasseri ATCC 33323  Bacteria  hitchhiker  0.000666496  normal  0.211393 
 
 
-
 
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