14 homologs were found in PanDaTox collection
for query gene Swoo_4255 on replicon NC_010506
Organism: Shewanella woodyi ATCC 51908



Page 1 of 1    << first  < prev  1  next >  last >>   


Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_009831  Ssed_0707  FG-GAP repeat-containing protein  64.97 
 
 
513 aa  649    Shewanella sediminis HAW-EB3  Bacteria  hitchhiker  0.0000109321  hitchhiker  0.0000143754 
 
 
-
 
NC_010506  Swoo_4255  FG-GAP repeat-containing protein  100 
 
 
512 aa  1033    Shewanella woodyi ATCC 51908  Bacteria  unclonable  0.000000954182  hitchhiker  0.000000354896 
 
 
-
 
NC_009901  Spea_3626  FG-GAP repeat-containing protein  55.75 
 
 
511 aa  543  1e-153  Shewanella pealeana ATCC 700345  Bacteria  normal  n/a   
 
 
-
 
NC_009092  Shew_3320  FG-GAP repeat-containing protein  52.2 
 
 
529 aa  501  1e-141  Shewanella loihica PV-4  Bacteria  normal  normal 
 
 
-
 
NC_003910  CPS_0069  FG-GAP repeat-containing protein  45.78 
 
 
511 aa  465  9.999999999999999e-131  Colwellia psychrerythraea 34H  Bacteria  normal  n/a   
 
 
-
 
NC_007413  Ava_0582  Integrins alpha chain  23.92 
 
 
1019 aa  52  0.00003  Anabaena variabilis ATCC 29413  Bacteria  normal  normal 
 
 
-
 
NC_002939  GSU1540  putative lipoprotein  28.09 
 
 
404 aa  51.6  0.00004  Geobacter sulfurreducens PCA  Bacteria  normal  0.402667  n/a   
 
 
-
 
NC_011894  Mnod_6310  FG-GAP repeat protein  25.99 
 
 
828 aa  51.2  0.00004  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_010830  Aasi_1414  hypothetical protein  29.66 
 
 
2534 aa  46.2  0.001  Candidatus Amoebophilus asiaticus 5a2  Bacteria  n/a    normal  0.733329 
 
 
-
 
NC_008009  Acid345_0385  integrin like protein  21.69 
 
 
974 aa  45.8  0.002  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  normal  0.459486 
 
 
-
 
NC_008312  Tery_0666  Na-Ca exchanger/integrin-beta4  22.88 
 
 
891 aa  44.7  0.004  Trichodesmium erythraeum IMS101  Bacteria  normal  normal 
 
 
-
 
NC_010511  M446_0982  peptidase M10A and M12B matrixin and adamalysin  21.57 
 
 
470 aa  44.7  0.004  Methylobacterium sp. 4-46  Bacteria  normal  0.768142  normal 
 
 
-
 
NC_012669  Bcav_1188  N-acetylmuramoyl-L-alanine amidase family 2  29.36 
 
 
794 aa  43.5  0.009  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.469744  normal  0.0598623 
 
 
-
 
NC_008255  CHU_0530  hypothetical protein  36.25 
 
 
1210 aa  43.5  0.01  Cytophaga hutchinsonii ATCC 33406  Bacteria  decreased coverage  0.0010082  normal  0.0887655 
 
 
-
 
Page 1 of 1    << first  < prev  1  next >  last >>