51 homologs were found in PanDaTox collection
for query gene Swoo_0216 on replicon NC_010506
Organism: Shewanella woodyi ATCC 51908



Page 1 of 1    << first  < prev  1  next >  last >>   


Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_010506  Swoo_0216  PaaX family transcriptional regulator  100 
 
 
311 aa  640    Shewanella woodyi ATCC 51908  Bacteria  normal  normal  0.0165647 
 
 
-
 
NC_010322  PputGB1_2610  PaaX family transcriptional regulator  37.86 
 
 
334 aa  210  3e-53  Pseudomonas putida GB-1  Bacteria  normal  0.218497  normal  0.0704814 
 
 
-
 
NC_010501  PputW619_2623  PaaX family transcriptional regulator  38.21 
 
 
334 aa  209  4e-53  Pseudomonas putida W619  Bacteria  normal  0.312733  normal  0.0873289 
 
 
-
 
NC_002947  PP_3286  PaaX family transcriptional regulator  37.86 
 
 
307 aa  207  2e-52  Pseudomonas putida KT2440  Bacteria  normal  0.17765  normal 
 
 
-
 
NC_009512  Pput_2473  PaaX family transcriptional regulator  37.86 
 
 
334 aa  207  2e-52  Pseudomonas putida F1  Bacteria  normal  0.303711  normal 
 
 
-
 
NC_009654  Mmwyl1_3103  PaaX family transcriptional regulator  35.19 
 
 
307 aa  205  7e-52  Marinomonas sp. MWYL1  Bacteria  decreased coverage  0.000000661945  decreased coverage  0.0000397547 
 
 
-
 
NC_011662  Tmz1t_0196  transcriptional regulator, PaaX family  35.92 
 
 
319 aa  202  7e-51  Thauera sp. MZ1T  Bacteria  normal  n/a   
 
 
-
 
NC_007958  RPD_1521  phenylacetic acid degradation operon negative regulatory protein PaaX  33.81 
 
 
312 aa  191  1e-47  Rhodopseudomonas palustris BisB5  Bacteria  normal  normal 
 
 
-
 
NC_007348  Reut_B3734  phenylacetic acid degradation operon negative regulatory protein PaaX  34.63 
 
 
307 aa  179  8e-44  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_007298  Daro_0386  phenylacetic acid degradation operon negative regulatory protein PaaX  34.56 
 
 
352 aa  177  2e-43  Dechloromonas aromatica RCB  Bacteria  hitchhiker  0.0000000187716  normal  0.0170462 
 
 
-
 
NC_009832  Spro_3083  PaaX family transcriptional regulator  32.67 
 
 
312 aa  177  2e-43  Serratia proteamaculans 568  Bacteria  normal  normal  0.415086 
 
 
-
 
CP001637  EcDH1_2246  transcriptional regulator, PaaX family  33.45 
 
 
316 aa  175  9.999999999999999e-43  Escherichia coli DH1  Bacteria  normal  0.218129  n/a   
 
 
-
 
NC_009801  EcE24377A_1585  phenylacetic acid degradation operon negative regulatory protein PaaX  33.45 
 
 
316 aa  174  9.999999999999999e-43  Escherichia coli E24377A  Bacteria  normal  n/a   
 
 
-
 
NC_010468  EcolC_2256  PaaX family transcriptional regulator  33.68 
 
 
316 aa  174  1.9999999999999998e-42  Escherichia coli ATCC 8739  Bacteria  normal  0.203735  normal 
 
 
-
 
NC_009800  EcHS_A1486  phenylacetic acid degradation operon negative regulatory protein PaaX  33.68 
 
 
316 aa  174  1.9999999999999998e-42  Escherichia coli HS  Bacteria  normal  n/a   
 
 
-
 
NC_011662  Tmz1t_1514  transcriptional regulator, PaaX family  35.44 
 
 
316 aa  172  9e-42  Thauera sp. MZ1T  Bacteria  normal  0.139923  n/a   
 
 
-
 
NC_013411  GYMC61_2859  transcriptional regulator, PaaX family  31.82 
 
 
285 aa  160  2e-38  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_008709  Ping_0661  PaaX domain-containing protein, C- domain  30.18 
 
 
285 aa  138  1e-31  Psychromonas ingrahamii 37  Bacteria  normal  normal 
 
 
-
 
NC_009485  BBta_2864  phenylacetic acid degradation operon negative regulatory protein paaX  29.85 
 
 
293 aa  132  9e-30  Bradyrhizobium sp. BTAi1  Bacteria  decreased coverage  0.00499823  normal  0.0484276 
 
 
-
 
NC_007925  RPC_0692  phenylacetic acid degradation operon negative regulatory protein PaaX  28.38 
 
 
287 aa  130  3e-29  Rhodopseudomonas palustris BisB18  Bacteria  normal  0.717402  normal 
 
 
-
 
NC_011894  Mnod_3357  transcriptional regulator, PaaX family  31.79 
 
 
301 aa  130  4.0000000000000003e-29  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_009720  Xaut_0895  PaaX family transcriptional regulator  27.56 
 
 
305 aa  127  2.0000000000000002e-28  Xanthobacter autotrophicus Py2  Bacteria  normal  0.947925  normal 
 
 
-
 
NC_011894  Mnod_7200  transcriptional regulator, PaaX family  29.79 
 
 
292 aa  125  1e-27  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.803046  n/a   
 
 
-
 
NC_013411  GYMC61_2835  transcriptional regulator, PaaX family  27.59 
 
 
285 aa  122  6e-27  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_009620  Smed_4146  PaaX family transcriptional regulator  28.37 
 
 
305 aa  120  1.9999999999999998e-26  Sinorhizobium medicae WSM419  Bacteria  normal  normal  0.85173 
 
 
-
 
NC_008688  Pden_4812  PaaX domain-containing protein  30.34 
 
 
284 aa  114  1.0000000000000001e-24  Paracoccus denitrificans PD1222  Bacteria  normal  normal  0.33483 
 
 
-
 
NC_009484  Acry_0094  PaaX family transcriptional regulator  29.35 
 
 
289 aa  113  5e-24  Acidiphilium cryptum JF-5  Bacteria  normal  0.339453  n/a   
 
 
-
 
NC_014212  Mesil_0980  transcriptional regulator, PaaX family  28.79 
 
 
259 aa  98.6  1e-19  Meiothermus silvanus DSM 9946  Bacteria  normal  normal  0.148761 
 
 
-
 
NC_013131  Caci_2009  transcriptional regulator, PaaX family  25.29 
 
 
281 aa  94.7  2e-18  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.429433  normal 
 
 
-
 
NC_009921  Franean1_1685  PaaX family transcriptional regulator  26.67 
 
 
333 aa  94.4  2e-18  Frankia sp. EAN1pec  Bacteria  normal  0.0710641  normal  0.260669 
 
 
-
 
NC_013739  Cwoe_2150  transcriptional regulator, PaaX family  25.98 
 
 
289 aa  89.4  6e-17  Conexibacter woesei DSM 14684  Bacteria  normal  0.933136  normal  0.276366 
 
 
-
 
NC_013093  Amir_0787  transcriptional regulator, PaaX family  26.72 
 
 
268 aa  87.8  2e-16  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_014151  Cfla_0294  transcriptional regulator, PaaX family  27.11 
 
 
318 aa  86.7  4e-16  Cellulomonas flavigena DSM 20109  Bacteria  normal  0.0429653  hitchhiker  0.0000864342 
 
 
-
 
NC_013946  Mrub_2629  PaaX family transcriptional regulator  26.85 
 
 
259 aa  86.3  6e-16  Meiothermus ruber DSM 1279  Bacteria  normal  0.495501  normal 
 
 
-
 
NC_013530  Xcel_0309  transcriptional regulator, PaaX family  23.19 
 
 
302 aa  84  0.000000000000003  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  n/a   
 
 
-
 
NC_009953  Sare_0655  PaaX family transcriptional regulator  27.04 
 
 
272 aa  84  0.000000000000003  Salinispora arenicola CNS-205  Bacteria  normal  0.0748596  hitchhiker  0.00291671 
 
 
-
 
NC_009380  Strop_0708  PaaX family transcriptional regulator  25.47 
 
 
272 aa  83.2  0.000000000000005  Salinispora tropica CNB-440  Bacteria  normal  0.719013  normal  0.640912 
 
 
-
 
NC_013947  Snas_0703  transcriptional regulator, PaaX family  24.42 
 
 
259 aa  81.6  0.00000000000001  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal 
 
 
-
 
NC_013947  Snas_6455  transcriptional regulator, PaaX family  23.32 
 
 
260 aa  76.6  0.0000000000005  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal 
 
 
-
 
NC_013595  Sros_8420  putative transcriptional regulator, PaaX family  25.82 
 
 
260 aa  76.6  0.0000000000006  Streptosporangium roseum DSM 43021  Bacteria  normal  0.289328  normal 
 
 
-
 
NC_013235  Namu_0588  transcriptional regulator, PaaX family  23.97 
 
 
276 aa  72.8  0.000000000006  Nakamurella multipartita DSM 44233  Bacteria  normal  normal 
 
 
-
 
NC_013159  Svir_19070  phenylacetic acid-responsive transcriptional repressor  24.81 
 
 
292 aa  73.2  0.000000000006  Saccharomonospora viridis DSM 43017  Bacteria  normal  0.0202563  normal 
 
 
-
 
NC_014165  Tbis_1609  PaaX family transcriptional regulator  25.31 
 
 
258 aa  71.6  0.00000000001  Thermobispora bispora DSM 43833  Bacteria  normal  normal 
 
 
-
 
NC_008699  Noca_1206  PaaX domain-containing protein, C- domain  24.05 
 
 
258 aa  66.2  0.0000000007  Nocardioides sp. JS614  Bacteria  normal  n/a   
 
 
-
 
NC_013131  Caci_4899  transcriptional regulator, PaaX family  25.64 
 
 
276 aa  63.2  0.000000005  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.425131  normal 
 
 
-
 
NC_009956  Dshi_3828  PaaX family transcriptional regulator  24.19 
 
 
264 aa  63.2  0.000000005  Dinoroseobacter shibae DFL 12  Bacteria  normal  0.648927  normal 
 
 
-
 
NC_013131  Caci_5523  transcriptional regulator, PaaX family  22.99 
 
 
267 aa  60.1  0.00000005  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal  0.543092 
 
 
-
 
NC_008044  TM1040_0436  PaaX-like  24.03 
 
 
301 aa  56.6  0.0000005  Ruegeria sp. TM1040  Bacteria  normal  normal  0.581976 
 
 
-
 
NC_014151  Cfla_0289  transcriptional regulator, PaaX family  22.99 
 
 
280 aa  54.7  0.000002  Cellulomonas flavigena DSM 20109  Bacteria  normal  0.010887  hitchhiker  0.0000784974 
 
 
-
 
NC_014151  Cfla_2025  transcriptional regulator, PaaX family  21.68 
 
 
306 aa  50.1  0.00005  Cellulomonas flavigena DSM 20109  Bacteria  normal  normal 
 
 
-
 
NC_007802  Jann_0659  PaaX-like  22.06 
 
 
265 aa  44.3  0.003  Jannaschia sp. CCS1  Bacteria  normal  0.702789  normal 
 
 
-
 
Page 1 of 1    << first  < prev  1  next >  last >>