13 homologs were found in PanDaTox collection
for query gene Swit_1862 on replicon NC_009511
Organism: Sphingomonas wittichii RW1



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_009511  Swit_1862  hypothetical protein  100 
 
 
249 aa  499  1e-140  Sphingomonas wittichii RW1  Bacteria  normal  normal  0.530634 
 
 
-
 
NC_009511  Swit_3331  ethyl tert-butyl ether degradation EthD  35.34 
 
 
120 aa  70.5  0.00000000003  Sphingomonas wittichii RW1  Bacteria  normal  hitchhiker  0.00220158 
 
 
-
 
NC_009427  Saro_3720  ethyl tert-butyl ether degradation EthD  34.88 
 
 
274 aa  69.7  0.00000000004  Novosphingobium aromaticivorans DSM 12444  Bacteria  normal  0.81836  n/a   
 
 
-
 
NC_009921  Franean1_5806  ethyl tert-butyl ether degradation EthD  35.54 
 
 
119 aa  68.9  0.00000000007  Frankia sp. EAN1pec  Bacteria  normal  normal 
 
 
-
 
NC_013730  Slin_3831  Ethyl tert-butyl ether degradation EthD  33.33 
 
 
113 aa  53.9  0.000003  Spirosoma linguale DSM 74  Bacteria  normal  normal  0.654041 
 
 
-
 
NC_009921  Franean1_4490  ethyl tert-butyl ether degradation EthD  29.46 
 
 
131 aa  52.4  0.000007  Frankia sp. EAN1pec  Bacteria  normal  normal 
 
 
-
 
NC_009511  Swit_2009  ethyl tert-butyl ether degradation EthD  28.93 
 
 
125 aa  50.8  0.00002  Sphingomonas wittichii RW1  Bacteria  normal  normal 
 
 
-
 
NC_009921  Franean1_3852  ethyl tert-butyl ether degradation EthD  26.09 
 
 
136 aa  50.4  0.00002  Frankia sp. EAN1pec  Bacteria  normal  0.0818324  normal 
 
 
-
 
NC_007348  Reut_B3850  ethyl tert-butyl ether degradation EthD  27.64 
 
 
230 aa  49.7  0.00004  Ralstonia eutropha JMP134  Bacteria  normal  0.421261  n/a   
 
 
-
 
NC_009511  Swit_3325  ethyl tert-butyl ether degradation EthD  29.09 
 
 
189 aa  49.3  0.00005  Sphingomonas wittichii RW1  Bacteria  normal  0.151498  hitchhiker  0.000641272 
 
 
-
 
NC_007516  Syncc9605_0823  ethyl tert-butyl ether degradation EthD  21.12 
 
 
239 aa  44.7  0.001  Synechococcus sp. CC9605  Bacteria  normal  0.104717  unclonable  0.00000965706 
 
 
-
 
NC_009427  Saro_3492  hypothetical protein  29.03 
 
 
119 aa  43.1  0.004  Novosphingobium aromaticivorans DSM 12444  Bacteria  normal  0.662132  n/a   
 
 
-
 
NC_013132  Cpin_2530  Ethyl tert-butyl ether degradation EthD  22.22 
 
 
116 aa  42.4  0.006  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
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