57 homologs were found in PanDaTox collection
for query gene Strop_0708 on replicon NC_009380
Organism: Salinispora tropica CNB-440



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_009380  Strop_0708  PaaX family transcriptional regulator  100 
 
 
272 aa  539  9.999999999999999e-153  Salinispora tropica CNB-440  Bacteria  normal  0.719013  normal  0.640912 
 
 
-
 
NC_009953  Sare_0655  PaaX family transcriptional regulator  93.36 
 
 
272 aa  506  9.999999999999999e-143  Salinispora arenicola CNS-205  Bacteria  normal  0.0748596  hitchhiker  0.00291671 
 
 
-
 
NC_013093  Amir_0787  transcriptional regulator, PaaX family  53.31 
 
 
268 aa  244  9.999999999999999e-64  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_013947  Snas_0703  transcriptional regulator, PaaX family  53.08 
 
 
259 aa  243  1.9999999999999999e-63  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal 
 
 
-
 
NC_013595  Sros_8420  putative transcriptional regulator, PaaX family  54.23 
 
 
260 aa  239  2.9999999999999997e-62  Streptosporangium roseum DSM 43021  Bacteria  normal  0.289328  normal 
 
 
-
 
NC_008699  Noca_1206  PaaX domain-containing protein, C- domain  50.38 
 
 
258 aa  203  3e-51  Nocardioides sp. JS614  Bacteria  normal  n/a   
 
 
-
 
NC_013411  GYMC61_2859  transcriptional regulator, PaaX family  34.69 
 
 
285 aa  176  4e-43  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_013411  GYMC61_2835  transcriptional regulator, PaaX family  29.37 
 
 
285 aa  143  3e-33  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_007298  Daro_0386  phenylacetic acid degradation operon negative regulatory protein PaaX  31.8 
 
 
352 aa  133  3e-30  Dechloromonas aromatica RCB  Bacteria  hitchhiker  0.0000000187716  normal  0.0170462 
 
 
-
 
NC_009654  Mmwyl1_3103  PaaX family transcriptional regulator  29.26 
 
 
307 aa  130  2.0000000000000002e-29  Marinomonas sp. MWYL1  Bacteria  decreased coverage  0.000000661945  decreased coverage  0.0000397547 
 
 
-
 
NC_013131  Caci_2009  transcriptional regulator, PaaX family  36.68 
 
 
281 aa  129  4.0000000000000003e-29  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.429433  normal 
 
 
-
 
NC_011662  Tmz1t_1514  transcriptional regulator, PaaX family  32.23 
 
 
316 aa  128  9.000000000000001e-29  Thauera sp. MZ1T  Bacteria  normal  0.139923  n/a   
 
 
-
 
NC_009832  Spro_3083  PaaX family transcriptional regulator  31.23 
 
 
312 aa  123  3e-27  Serratia proteamaculans 568  Bacteria  normal  normal  0.415086 
 
 
-
 
NC_002947  PP_3286  PaaX family transcriptional regulator  30.18 
 
 
307 aa  121  9.999999999999999e-27  Pseudomonas putida KT2440  Bacteria  normal  0.17765  normal 
 
 
-
 
NC_010322  PputGB1_2610  PaaX family transcriptional regulator  29.82 
 
 
334 aa  120  1.9999999999999998e-26  Pseudomonas putida GB-1  Bacteria  normal  0.218497  normal  0.0704814 
 
 
-
 
NC_009512  Pput_2473  PaaX family transcriptional regulator  29.82 
 
 
334 aa  119  6e-26  Pseudomonas putida F1  Bacteria  normal  0.303711  normal 
 
 
-
 
NC_011662  Tmz1t_0196  transcriptional regulator, PaaX family  32.21 
 
 
319 aa  117  9.999999999999999e-26  Thauera sp. MZ1T  Bacteria  normal  n/a   
 
 
-
 
NC_014212  Mesil_0980  transcriptional regulator, PaaX family  35.36 
 
 
259 aa  115  7.999999999999999e-25  Meiothermus silvanus DSM 9946  Bacteria  normal  normal  0.148761 
 
 
-
 
NC_010501  PputW619_2623  PaaX family transcriptional regulator  29.8 
 
 
334 aa  114  2.0000000000000002e-24  Pseudomonas putida W619  Bacteria  normal  0.312733  normal  0.0873289 
 
 
-
 
NC_013235  Namu_0588  transcriptional regulator, PaaX family  34.4 
 
 
276 aa  110  3e-23  Nakamurella multipartita DSM 44233  Bacteria  normal  normal 
 
 
-
 
NC_011894  Mnod_7200  transcriptional regulator, PaaX family  33.59 
 
 
292 aa  106  5e-22  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.803046  n/a   
 
 
-
 
NC_009720  Xaut_0895  PaaX family transcriptional regulator  34.5 
 
 
305 aa  106  5e-22  Xanthobacter autotrophicus Py2  Bacteria  normal  0.947925  normal 
 
 
-
 
NC_009801  EcE24377A_1585  phenylacetic acid degradation operon negative regulatory protein PaaX  30.53 
 
 
316 aa  105  8e-22  Escherichia coli E24377A  Bacteria  normal  n/a   
 
 
-
 
CP001637  EcDH1_2246  transcriptional regulator, PaaX family  30.53 
 
 
316 aa  105  1e-21  Escherichia coli DH1  Bacteria  normal  0.218129  n/a   
 
 
-
 
NC_013739  Cwoe_2150  transcriptional regulator, PaaX family  34.21 
 
 
289 aa  104  1e-21  Conexibacter woesei DSM 14684  Bacteria  normal  0.933136  normal  0.276366 
 
 
-
 
NC_010468  EcolC_2256  PaaX family transcriptional regulator  30.53 
 
 
316 aa  104  1e-21  Escherichia coli ATCC 8739  Bacteria  normal  0.203735  normal 
 
 
-
 
NC_009800  EcHS_A1486  phenylacetic acid degradation operon negative regulatory protein PaaX  30.53 
 
 
316 aa  104  1e-21  Escherichia coli HS  Bacteria  normal  n/a   
 
 
-
 
NC_013946  Mrub_2629  PaaX family transcriptional regulator  31.73 
 
 
259 aa  103  2e-21  Meiothermus ruber DSM 1279  Bacteria  normal  0.495501  normal 
 
 
-
 
NC_007925  RPC_0692  phenylacetic acid degradation operon negative regulatory protein PaaX  31.13 
 
 
287 aa  100  3e-20  Rhodopseudomonas palustris BisB18  Bacteria  normal  0.717402  normal 
 
 
-
 
NC_014151  Cfla_0294  transcriptional regulator, PaaX family  35.25 
 
 
318 aa  99.8  4e-20  Cellulomonas flavigena DSM 20109  Bacteria  normal  0.0429653  hitchhiker  0.0000864342 
 
 
-
 
NC_007958  RPD_1521  phenylacetic acid degradation operon negative regulatory protein PaaX  29.37 
 
 
312 aa  99.8  5e-20  Rhodopseudomonas palustris BisB5  Bacteria  normal  normal 
 
 
-
 
NC_009485  BBta_2864  phenylacetic acid degradation operon negative regulatory protein paaX  29.3 
 
 
293 aa  96.7  4e-19  Bradyrhizobium sp. BTAi1  Bacteria  decreased coverage  0.00499823  normal  0.0484276 
 
 
-
 
NC_013947  Snas_6455  transcriptional regulator, PaaX family  31.15 
 
 
260 aa  96.7  4e-19  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal 
 
 
-
 
NC_013159  Svir_19070  phenylacetic acid-responsive transcriptional repressor  29.17 
 
 
292 aa  96.3  5e-19  Saccharomonospora viridis DSM 43017  Bacteria  normal  0.0202563  normal 
 
 
-
 
NC_007348  Reut_B3734  phenylacetic acid degradation operon negative regulatory protein PaaX  28.16 
 
 
307 aa  95.9  6e-19  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_013530  Xcel_0309  transcriptional regulator, PaaX family  31.25 
 
 
302 aa  90.5  3e-17  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  n/a   
 
 
-
 
NC_009921  Franean1_1685  PaaX family transcriptional regulator  31.84 
 
 
333 aa  90.1  3e-17  Frankia sp. EAN1pec  Bacteria  normal  0.0710641  normal  0.260669 
 
 
-
 
NC_014165  Tbis_1609  PaaX family transcriptional regulator  29.77 
 
 
258 aa  89.4  5e-17  Thermobispora bispora DSM 43833  Bacteria  normal  normal 
 
 
-
 
NC_011894  Mnod_3357  transcriptional regulator, PaaX family  32.97 
 
 
301 aa  86.3  5e-16  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_013131  Caci_5523  transcriptional regulator, PaaX family  32.95 
 
 
267 aa  84.7  0.000000000000001  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal  0.543092 
 
 
-
 
NC_013131  Caci_4899  transcriptional regulator, PaaX family  27.86 
 
 
276 aa  84.3  0.000000000000002  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.425131  normal 
 
 
-
 
NC_008709  Ping_0661  PaaX domain-containing protein, C- domain  22.84 
 
 
285 aa  84  0.000000000000003  Psychromonas ingrahamii 37  Bacteria  normal  normal 
 
 
-
 
NC_010506  Swoo_0216  PaaX family transcriptional regulator  25.47 
 
 
311 aa  83.2  0.000000000000004  Shewanella woodyi ATCC 51908  Bacteria  normal  normal  0.0165647 
 
 
-
 
NC_008688  Pden_4812  PaaX domain-containing protein  30.38 
 
 
284 aa  80.1  0.00000000000003  Paracoccus denitrificans PD1222  Bacteria  normal  normal  0.33483 
 
 
-
 
NC_009620  Smed_4146  PaaX family transcriptional regulator  29.96 
 
 
305 aa  77  0.0000000000003  Sinorhizobium medicae WSM419  Bacteria  normal  normal  0.85173 
 
 
-
 
NC_009484  Acry_0094  PaaX family transcriptional regulator  31.22 
 
 
289 aa  73.9  0.000000000002  Acidiphilium cryptum JF-5  Bacteria  normal  0.339453  n/a   
 
 
-
 
NC_014151  Cfla_0289  transcriptional regulator, PaaX family  31.93 
 
 
280 aa  72.4  0.000000000008  Cellulomonas flavigena DSM 20109  Bacteria  normal  0.010887  hitchhiker  0.0000784974 
 
 
-
 
NC_014151  Cfla_2025  transcriptional regulator, PaaX family  27.53 
 
 
306 aa  62.8  0.000000006  Cellulomonas flavigena DSM 20109  Bacteria  normal  normal 
 
 
-
 
NC_008726  Mvan_1271  PaaX domain-containing protein, C- domain  30.43 
 
 
237 aa  57.4  0.0000003  Mycobacterium vanbaalenii PYR-1  Bacteria  decreased coverage  0.00141132  normal 
 
 
-
 
NC_009956  Dshi_3828  PaaX family transcriptional regulator  27.92 
 
 
264 aa  57  0.0000004  Dinoroseobacter shibae DFL 12  Bacteria  normal  0.648927  normal 
 
 
-
 
NC_008044  TM1040_0436  PaaX-like  25.32 
 
 
301 aa  56.2  0.0000005  Ruegeria sp. TM1040  Bacteria  normal  normal  0.581976 
 
 
-
 
NC_009565  TBFG_10688  hypothetical protein  28.75 
 
 
240 aa  51.6  0.00001  Mycobacterium tuberculosis F11  Bacteria  normal  normal 
 
 
-
 
NC_009077  Mjls_1005  PaaX domain-containing protein, C- domain  30.45 
 
 
243 aa  49.3  0.00007  Mycobacterium sp. JLS  Bacteria  normal  normal  0.457167 
 
 
-
 
NC_008705  Mkms_0995  PaaX domain-containing protein, C- domain  30.45 
 
 
243 aa  49.3  0.00007  Mycobacterium sp. KMS  Bacteria  normal  normal 
 
 
-
 
NC_008146  Mmcs_0977  PaaX-like protein  30.45 
 
 
243 aa  49.3  0.00007  Mycobacterium sp. MCS  Bacteria  normal  n/a   
 
 
-
 
NC_010571  Oter_1864  PaaX family transcriptional regulator  29.59 
 
 
252 aa  43.1  0.005  Opitutus terrae PB90-1  Bacteria  normal  normal 
 
 
-
 
NC_009338  Mflv_5085  PaaX domain-containing protein, C- domain  26.48 
 
 
244 aa  42.4  0.009  Mycobacterium gilvum PYR-GCK  Bacteria  normal  normal  0.706044 
 
 
-
 
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