More than 300 homologs were found in PanDaTox collection
for query gene Ssed_1501 on replicon NC_009831
Organism: Shewanella sediminis HAW-EB3



Page 1 of 3    << first  < prev  1  2  3    next >  last >>   


Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_009092  Shew_1698  binding-protein-dependent transport systems inner membrane component  77.13 
 
 
752 aa  1192    Shewanella loihica PV-4  Bacteria  normal  normal  0.719566 
 
 
-
 
NC_010506  Swoo_3168  binding-protein-dependent transport systems inner membrane component  83.24 
 
 
752 aa  1204    Shewanella woodyi ATCC 51908  Bacteria  normal  0.618473  normal 
 
 
-
 
NC_003910  CPS_3642  phosphate ABC transporter, permease protein  49.42 
 
 
778 aa  723    Colwellia psychrerythraea 34H  Bacteria  normal  n/a   
 
 
-
 
NC_004347  SO_1723  phosphate ABC transporter, permease protein, putative  73.98 
 
 
738 aa  1091    Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_007005  Psyr_5040  binding-protein dependent transport system inner membrane protein  48.85 
 
 
753 aa  650    Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal  0.921779 
 
 
-
 
NC_007484  Noc_2398  ABC transporter, inner membrane subunit  47.15 
 
 
761 aa  652    Nitrosococcus oceani ATCC 19707  Bacteria  normal  0.220176  n/a   
 
 
-
 
NC_007492  Pfl01_5614  binding-protein dependent transport system inner membrane protein  48.77 
 
 
760 aa  642    Pseudomonas fluorescens Pf0-1  Bacteria  normal  0.536938  normal  0.133836 
 
 
-
 
NC_009438  Sputcn32_1434  binding-protein-dependent transport systems inner membrane component  74.47 
 
 
752 aa  1120    Shewanella putrefaciens CN-32  Bacteria  normal  n/a   
 
 
-
 
NC_009997  Sbal195_1566  binding-protein-dependent transport systems inner membrane component  75 
 
 
752 aa  1097    Shewanella baltica OS195  Bacteria  normal  0.637323  normal  0.18855 
 
 
-
 
NC_009665  Shew185_1533  binding-protein-dependent transport systems inner membrane component  75 
 
 
752 aa  1103    Shewanella baltica OS185  Bacteria  normal  0.0241057  n/a   
 
 
-
 
NC_009656  PSPA7_6147  membrane protein component of ABC phosphate transporter  48.85 
 
 
761 aa  645    Pseudomonas aeruginosa PA7  Bacteria  normal  0.297705  n/a   
 
 
-
 
NC_011663  Sbal223_2818  binding-protein-dependent transport systems inner membrane component  75 
 
 
752 aa  1102    Shewanella baltica OS223  Bacteria  normal  normal 
 
 
-
 
NC_009512  Pput_5236  binding-protein-dependent transport systems inner membrane component  49.13 
 
 
762 aa  653    Pseudomonas putida F1  Bacteria  normal  0.644471  normal  0.245739 
 
 
-
 
NC_007954  Sden_2584  binding-protein-dependent transport systems inner membrane component  71.94 
 
 
751 aa  1064    Shewanella denitrificans OS217  Bacteria  normal  n/a   
 
 
-
 
NC_010322  PputGB1_5375  binding-protein-dependent transport systems inner membrane component  49.13 
 
 
762 aa  650    Pseudomonas putida GB-1  Bacteria  normal  normal  0.690335 
 
 
-
 
NC_009901  Spea_2745  binding-protein-dependent transport systems inner membrane component  78.59 
 
 
751 aa  1184    Shewanella pealeana ATCC 700345  Bacteria  normal  n/a   
 
 
-
 
NC_009052  Sbal_1538  binding-protein-dependent transport systems inner membrane component  75 
 
 
752 aa  1103    Shewanella baltica OS155  Bacteria  normal  n/a   
 
 
-
 
NC_012560  Avin_48590  Phosphate ABC-transporter, permease protein PstC  49.33 
 
 
762 aa  642    Azotobacter vinelandii DJ  Bacteria  normal  n/a   
 
 
-
 
NC_008321  Shewmr4_2560  binding-protein-dependent transport systems inner membrane component  73.94 
 
 
752 aa  1083    Shewanella sp. MR-4  Bacteria  normal  normal 
 
 
-
 
NC_008322  Shewmr7_2627  binding-protein-dependent transport systems inner membrane component  73.67 
 
 
752 aa  1080    Shewanella sp. MR-7  Bacteria  normal  normal 
 
 
-
 
NC_008345  Sfri_1357  binding-protein-dependent transport systems inner membrane component  73.27 
 
 
751 aa  1103    Shewanella frigidimarina NCIMB 400  Bacteria  normal  n/a   
 
 
-
 
NC_010501  PputW619_0146  binding-protein-dependent transport systems inner membrane component  49.53 
 
 
762 aa  654    Pseudomonas putida W619  Bacteria  normal  0.212947  normal 
 
 
-
 
NC_008577  Shewana3_2734  binding-protein-dependent transport systems inner membrane component  74.2 
 
 
752 aa  1115    Shewanella sp. ANA-3  Bacteria  normal  normal 
 
 
-
 
NC_009439  Pmen_0180  binding-protein-dependent transport systems inner membrane component  50.41 
 
 
761 aa  661    Pseudomonas mendocina ymp  Bacteria  normal  normal 
 
 
-
 
NC_008700  Sama_1408  phosphate ABC transporter, permease protein, putative  71.68 
 
 
751 aa  1057    Shewanella amazonensis SB2B  Bacteria  normal  normal  0.0601702 
 
 
-
 
NC_009654  Mmwyl1_4416  binding-protein-dependent transport systems inner membrane component  49.73 
 
 
755 aa  692    Marinomonas sp. MWYL1  Bacteria  normal  0.383824  normal 
 
 
-
 
NC_009831  Ssed_1501  binding-protein-dependent transport systems inner membrane component  100 
 
 
752 aa  1527    Shewanella sediminis HAW-EB3  Bacteria  unclonable  0.0000210465  normal 
 
 
-
 
NC_011312  VSAL_I2454  phosphate import protein, transmembrane component PstC  45.96 
 
 
735 aa  615  1e-175  Aliivibrio salmonicida LFI1238  Bacteria  normal  0.530002  n/a   
 
 
-
 
NC_007520  Tcr_0537  binding-protein dependent transport system inner membrane protein  44.69 
 
 
755 aa  614  9.999999999999999e-175  Thiomicrospira crunogena XCL-2  Bacteria  normal  n/a   
 
 
-
 
NC_004578  PSPTO_5486  phosphate ABC transporter, permease protein, putative  50.59 
 
 
677 aa  612  1e-173  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_002947  PP_5328  binding-protein-dependent transport systems inner membrane component  50 
 
 
669 aa  607  9.999999999999999e-173  Pseudomonas putida KT2440  Bacteria  normal  0.662544  hitchhiker  0.00483454 
 
 
-
 
NC_008463  PA14_70850  membrane protein component of ABC phosphate transporter  49.19 
 
 
677 aa  604  1.0000000000000001e-171  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal  0.721295 
 
 
-
 
NC_013889  TK90_0956  binding-protein-dependent transport systems inner membrane component  44.7 
 
 
756 aa  591  1e-167  Thioalkalivibrio sp. K90mix  Bacteria  normal  0.137711  normal  0.159136 
 
 
-
 
NC_013456  VEA_004380  phosphate transport system permease protein PstC  44.82 
 
 
734 aa  582  1.0000000000000001e-165  Vibrio sp. Ex25  Bacteria  normal  n/a   
 
 
-
 
NC_008789  Hhal_0095  binding-protein-dependent transport systems inner membrane component  44.24 
 
 
775 aa  582  1.0000000000000001e-165  Halorhodospira halophila SL1  Bacteria  normal  n/a   
 
 
-
 
NC_009783  VIBHAR_01031  hypothetical protein  45.01 
 
 
734 aa  580  1e-164  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_008340  Mlg_1135  binding-protein-dependent transport systems inner membrane component  44.5 
 
 
771 aa  574  1.0000000000000001e-162  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  normal  0.975413 
 
 
-
 
NC_009457  VC0395_A0258  phosphate ABC transporter, permease protein  46.14 
 
 
731 aa  568  1e-160  Vibrio cholerae O395  Bacteria  normal  n/a   
 
 
-
 
NC_011901  Tgr7_2652  binding-protein-dependent transport systems inner membrane component  43.5 
 
 
765 aa  533  1e-150  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  n/a   
 
 
-
 
NC_009832  Spro_3540  binding-protein-dependent transport systems inner membrane component  42.76 
 
 
724 aa  516  1.0000000000000001e-145  Serratia proteamaculans 568  Bacteria  normal  0.875094  normal 
 
 
-
 
NC_009708  YpsIP31758_1228  phosphate ABC transporter, permease protein PstC  43.41 
 
 
743 aa  516  1.0000000000000001e-145  Yersinia pseudotuberculosis IP 31758  Bacteria  normal  n/a   
 
 
-
 
NC_010465  YPK_1345  binding-protein-dependent transport systems inner membrane component  43.3 
 
 
719 aa  506  9.999999999999999e-143  Yersinia pseudotuberculosis YPIII  Bacteria  normal  n/a   
 
 
-
 
NC_013421  Pecwa_1334  binding-protein-dependent transport systems inner membrane component  40.83 
 
 
722 aa  495  9.999999999999999e-139  Pectobacterium wasabiae WPP163  Bacteria  normal  n/a   
 
 
-
 
NC_012917  PC1_2944  binding-protein-dependent transport systems inner membrane component  40.68 
 
 
722 aa  486  1e-136  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  n/a   
 
 
-
 
NC_012880  Dd703_2671  binding-protein-dependent transport systems inner membrane component  41.19 
 
 
718 aa  475  1e-132  Dickeya dadantii Ech703  Bacteria  normal  n/a   
 
 
-
 
NC_012912  Dd1591_1237  binding-protein-dependent transport systems inner membrane component  39.08 
 
 
743 aa  443  1e-123  Dickeya zeae Ech1591  Bacteria  normal  0.0916528  n/a   
 
 
-
 
NC_008609  Ppro_3158  binding-protein-dependent transport systems inner membrane component  36.09 
 
 
742 aa  443  1e-123  Pelobacter propionicus DSM 2379  Bacteria  normal  n/a   
 
 
-
 
NC_007498  Pcar_0656  ABC-type phosphate transport system, permease component  36.45 
 
 
742 aa  418  9.999999999999999e-116  Pelobacter carbinolicus DSM 2380  Bacteria  normal  0.770286  n/a   
 
 
-
 
NC_010655  Amuc_1305  binding-protein-dependent transport systems inner membrane component  35.51 
 
 
784 aa  416  1e-114  Akkermansia muciniphila ATCC BAA-835  Bacteria  normal  normal  0.462831 
 
 
-
 
NC_010814  Glov_0619  binding-protein-dependent transport systems inner membrane component  50.49 
 
 
641 aa  405  1e-111  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
NC_007963  Csal_3267  binding-protein-dependent transport systems inner membrane component  35.78 
 
 
706 aa  370  1e-101  Chromohalobacter salexigens DSM 3043  Bacteria  normal  n/a   
 
 
-
 
NC_011138  MADE_03151  putative phosphate ABC transporter, permease protein  42.9 
 
 
727 aa  288  2.9999999999999996e-76  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  n/a   
 
 
-
 
NC_011891  A2cp1_4147  phosphate ABC transporter, inner membrane subunit PstC  38.77 
 
 
336 aa  159  2e-37  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  n/a   
 
 
-
 
NC_011145  AnaeK_4121  phosphate ABC transporter, inner membrane subunit PstC  38.77 
 
 
336 aa  159  2e-37  Anaeromyxobacter sp. K  Bacteria  normal  n/a   
 
 
-
 
NC_007760  Adeh_4005  phosphate ABC transporter inner membrane protein  39.21 
 
 
336 aa  158  3e-37  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  0.475796  n/a   
 
 
-
 
NC_009675  Anae109_0419  phosphate ABC transporter, inner membrane subunit PstC  38.33 
 
 
325 aa  158  4e-37  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  normal  0.730812 
 
 
-
 
NC_011899  Hore_21615  phosphate ABC transporter, permease protein PstA  37.5 
 
 
318 aa  156  1e-36  Halothermothrix orenii H 168  Bacteria  normal  n/a   
 
 
-
 
NC_011060  Ppha_1681  phosphate ABC transporter, inner membrane subunit PstC  34.57 
 
 
387 aa  143  9.999999999999999e-33  Pelodictyon phaeoclathratiforme BU-1  Bacteria  normal  0.091837  n/a   
 
 
-
 
NC_013517  Sterm_4079  phosphate ABC transporter, inner membrane subunit PstC  31.31 
 
 
357 aa  142  1.9999999999999998e-32  Sebaldella termitidis ATCC 33386  Bacteria  normal  n/a   
 
 
-
 
NC_007955  Mbur_0751  phosphate ABC transporter inner membrane protein  49.66 
 
 
297 aa  142  3e-32  Methanococcoides burtonii DSM 6242  Archaea  normal  0.0108561  n/a   
 
 
-
 
NC_010803  Clim_1619  phosphate ABC transporter, inner membrane subunit PstC  34.18 
 
 
388 aa  140  7e-32  Chlorobium limicola DSM 245  Bacteria  normal  n/a   
 
 
-
 
NC_007512  Plut_1244  phosphate ABC transporter permease  33.43 
 
 
387 aa  139  3.0000000000000003e-31  Chlorobium luteolum DSM 273  Bacteria  normal  0.81986  normal  0.80225 
 
 
-
 
NC_009051  Memar_2277  phosphate ABC transporter, inner membrane subunit PstC  45.51 
 
 
646 aa  137  5e-31  Methanoculleus marisnigri JR1  Archaea  normal  n/a   
 
 
-
 
NC_007519  Dde_1061  phosphate ABC transporter permease  46.81 
 
 
298 aa  137  6.0000000000000005e-31  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  normal  n/a   
 
 
-
 
NC_008751  Dvul_0764  phosphate ABC transporter, inner membrane subunit PstC  41.48 
 
 
297 aa  136  9.999999999999999e-31  Desulfovibrio vulgaris DP4  Bacteria  normal  normal  0.316 
 
 
-
 
NC_011059  Paes_0944  phosphate ABC transporter, inner membrane subunit PstC  33.44 
 
 
387 aa  135  1.9999999999999998e-30  Prosthecochloris aestuarii DSM 271  Bacteria  normal  normal  0.502812 
 
 
-
 
NC_008554  Sfum_2887  phosphate ABC transporter, inner membrane subunit PstC  35.43 
 
 
297 aa  136  1.9999999999999998e-30  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  normal  0.110489 
 
 
-
 
NC_010831  Cphamn1_1234  phosphate ABC transporter, inner membrane subunit PstC  32.31 
 
 
387 aa  134  3.9999999999999996e-30  Chlorobium phaeobacteroides BS1  Bacteria  normal  normal  0.352319 
 
 
-
 
NC_011899  Hore_21570  phosphate ABC transporter, inner membrane subunit PstC  45.21 
 
 
291 aa  135  3.9999999999999996e-30  Halothermothrix orenii H 168  Bacteria  normal  n/a   
 
 
-
 
NC_007355  Mbar_A1779  phosphate ABC transporter, permease protein  47.02 
 
 
296 aa  134  6e-30  Methanosarcina barkeri str. Fusaro  Archaea  normal  normal 
 
 
-
 
NC_011832  Mpal_0481  phosphate ABC transporter, inner membrane subunit PstC  42.22 
 
 
645 aa  132  3e-29  Methanosphaerula palustris E1-9c  Archaea  normal  normal 
 
 
-
 
NC_011883  Ddes_0565  phosphate ABC transporter, inner membrane subunit PstC  44.67 
 
 
296 aa  131  4.0000000000000003e-29  Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774  Bacteria  normal  0.0134721  n/a   
 
 
-
 
NC_013202  Hmuk_0356  phosphate ABC transporter, inner membrane subunit PstC  29.03 
 
 
350 aa  131  4.0000000000000003e-29  Halomicrobium mukohataei DSM 12286  Archaea  normal  0.0241985  normal  0.511021 
 
 
-
 
NC_009634  Mevan_0421  phosphate ABC transporter, inner membrane subunit PstC  44.37 
 
 
290 aa  128  4.0000000000000003e-28  Methanococcus vannielii SB  Archaea  normal  n/a   
 
 
-
 
NC_008639  Cpha266_1039  phosphate ABC transporter, inner membrane subunit PstC  32.29 
 
 
387 aa  127  7e-28  Chlorobium phaeobacteroides DSM 266  Bacteria  normal  0.0327987  n/a   
 
 
-
 
NC_009253  Dred_2105  phosphate ABC transporter, inner membrane subunit PstC  41.45 
 
 
283 aa  125  2e-27  Desulfotomaculum reducens MI-1  Bacteria  normal  n/a   
 
 
-
 
NC_007796  Mhun_2982  phosphate ABC transporter permease  47.55 
 
 
649 aa  125  3e-27  Methanospirillum hungatei JF-1  Archaea  normal  normal 
 
 
-
 
NC_009943  Dole_1926  phosphate ABC transporter, inner membrane subunit PstC  44.6 
 
 
309 aa  124  4e-27  Desulfococcus oleovorans Hxd3  Bacteria  normal  0.0478834  n/a   
 
 
-
 
NC_009712  Mboo_1918  phosphate ABC transporter, inner membrane subunit PstA  43.04 
 
 
604 aa  124  8e-27  Candidatus Methanoregula boonei 6A8  Archaea  normal  0.396887  normal 
 
 
-
 
NC_008554  Sfum_0704  phosphate ABC transporter, inner membrane subunit PstC  45.07 
 
 
303 aa  122  1.9999999999999998e-26  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  normal 
 
 
-
 
NC_009635  Maeo_0570  phosphate ABC transporter, inner membrane subunit PstC  42.47 
 
 
292 aa  121  3.9999999999999996e-26  Methanococcus aeolicus Nankai-3  Archaea  normal  n/a   
 
 
-
 
NC_012034  Athe_1162  phosphate ABC transporter, inner membrane subunit PstC  43.57 
 
 
284 aa  121  4.9999999999999996e-26  Anaerocellum thermophilum DSM 6725  Bacteria  normal  n/a   
 
 
-
 
NC_009135  MmarC5_0488  phosphate ABC transporter, inner membrane subunit PstC  39.73 
 
 
291 aa  119  9.999999999999999e-26  Methanococcus maripaludis C5  Archaea  normal  0.456942  n/a   
 
 
-
 
NC_009637  MmarC7_0348  phosphate ABC transporter, inner membrane subunit PstC  39.73 
 
 
291 aa  120  9.999999999999999e-26  Methanococcus maripaludis C7  Archaea  normal  hitchhiker  0.0000428257 
 
 
-
 
NC_009975  MmarC6_1571  phosphate ABC transporter, inner membrane subunit PstC  40.41 
 
 
291 aa  119  1.9999999999999998e-25  Methanococcus maripaludis C6  Archaea  normal  n/a   
 
 
-
 
NC_010571  Oter_2546  phosphate ABC transporter, inner membrane subunit PstC  41.56 
 
 
535 aa  118  3e-25  Opitutus terrae PB90-1  Bacteria  normal  normal  0.153415 
 
 
-
 
NC_013922  Nmag_2359  phosphate ABC transporter, inner membrane subunit PstC  27.54 
 
 
358 aa  117  6e-25  Natrialba magadii ATCC 43099  Archaea  normal  n/a   
 
 
-
 
NC_011729  PCC7424_2810  phosphate ABC transporter, inner membrane subunit PstC  30.1 
 
 
327 aa  115  3e-24  Cyanothece sp. PCC 7424  Bacteria  n/a    normal  0.107493 
 
 
-
 
NC_010718  Nther_0980  phosphate ABC transporter, inner membrane subunit PstC  34.66 
 
 
303 aa  114  6e-24  Natranaerobius thermophilus JW/NM-WN-LF  Bacteria  normal  normal  0.120988 
 
 
-
 
NC_010001  Cphy_1668  phosphate ABC transporter, inner membrane subunit PstC  31.65 
 
 
281 aa  113  1.0000000000000001e-23  Clostridium phytofermentans ISDg  Bacteria  decreased coverage  0.000000035104  n/a   
 
 
-
 
NC_013216  Dtox_1094  phosphate ABC transporter, inner membrane subunit PstC  38.5 
 
 
284 aa  113  1.0000000000000001e-23  Desulfotomaculum acetoxidans DSM 771  Bacteria  normal  normal 
 
 
-
 
NC_008553  Mthe_0705  phosphate ABC transporter, inner membrane subunit PstC  41.36 
 
 
301 aa  114  1.0000000000000001e-23  Methanosaeta thermophila PT  Archaea  normal  0.0779351  n/a   
 
 
-
 
NC_008942  Mlab_1117  hypothetical protein  33.83 
 
 
627 aa  113  2.0000000000000002e-23  Methanocorpusculum labreanum Z  Archaea  normal  normal 
 
 
-
 
NC_010524  Lcho_1655  phosphate ABC transporter, inner membrane subunit PstC  33.98 
 
 
311 aa  111  5e-23  Leptothrix cholodnii SP-6  Bacteria  n/a    normal 
 
 
-
 
NC_002939  GSU1098  phosphate ABC transporter, permease protein  40.13 
 
 
325 aa  109  2e-22  Geobacter sulfurreducens PCA  Bacteria  normal  n/a   
 
 
-
 
NC_010424  Daud_1959  phosphate ABC transporter, inner membrane subunit PstC  45.08 
 
 
290 aa  109  2e-22  Candidatus Desulforudis audaxviator MP104C  Bacteria  normal  n/a   
 
 
-
 
NC_007614  Nmul_A1086  phosphate ABC transporter permease  42.18 
 
 
310 aa  109  2e-22  Nitrosospira multiformis ATCC 25196  Bacteria  normal  n/a   
 
 
-
 
NC_013132  Cpin_4409  phosphate ABC transporter, inner membrane subunit PstC  43.15 
 
 
296 aa  108  3e-22  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.0464334  normal 
 
 
-
 
NC_007947  Mfla_0794  phosphate ABC transporter permease  34.98 
 
 
320 aa  108  3e-22  Methylobacillus flagellatus KT  Bacteria  normal  hitchhiker  0.00214055 
 
 
-
 
NC_010338  Caul_4550  phosphate ABC transporter, inner membrane subunit PstC  28.62 
 
 
480 aa  108  4e-22  Caulobacter sp. K31  Bacteria  normal  normal  0.447116 
 
 
-
 
Page 1 of 3    << first  < prev  1  2  3    next >  last >>