18 homologs were found in PanDaTox collection
for query gene Ssed_1248 on replicon NC_009831
Organism: Shewanella sediminis HAW-EB3



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_009831  Ssed_1248  hypothetical protein  100 
 
 
258 aa  535  1e-151  Shewanella sediminis HAW-EB3  Bacteria  normal  0.0534452  normal  0.591424 
 
 
-
 
NC_010506  Swoo_1348  hypothetical protein  54.44 
 
 
258 aa  286  2e-76  Shewanella woodyi ATCC 51908  Bacteria  hitchhiker  0.00722512  decreased coverage  0.000000397841 
 
 
-
 
NC_009997  Sbal195_0697  hypothetical protein  45.38 
 
 
242 aa  227  1e-58  Shewanella baltica OS195  Bacteria  normal  normal 
 
 
-
 
NC_011663  Sbal223_0687  hypothetical protein  45 
 
 
242 aa  226  3e-58  Shewanella baltica OS223  Bacteria  normal  normal 
 
 
-
 
NC_009052  Sbal_3690  hypothetical protein  44.62 
 
 
242 aa  224  1e-57  Shewanella baltica OS155  Bacteria  normal  n/a   
 
 
-
 
NC_009665  Shew185_0666  hypothetical protein  44.23 
 
 
242 aa  223  2e-57  Shewanella baltica OS185  Bacteria  normal  n/a   
 
 
-
 
NC_009901  Spea_1143  hypothetical protein  40.94 
 
 
295 aa  215  5.9999999999999996e-55  Shewanella pealeana ATCC 700345  Bacteria  hitchhiker  0.000972481  n/a   
 
 
-
 
NC_009092  Shew_1156  hypothetical protein  42.29 
 
 
277 aa  206  2e-52  Shewanella loihica PV-4  Bacteria  hitchhiker  0.000585757  decreased coverage  0.00659921 
 
 
-
 
NC_008322  Shewmr7_0585  hypothetical protein  42.29 
 
 
248 aa  206  3e-52  Shewanella sp. MR-7  Bacteria  normal  normal 
 
 
-
 
NC_008321  Shewmr4_3368  hypothetical protein  45.95 
 
 
248 aa  205  5e-52  Shewanella sp. MR-4  Bacteria  normal  normal 
 
 
-
 
NC_008577  Shewana3_3538  hypothetical protein  45.95 
 
 
248 aa  204  8e-52  Shewanella sp. ANA-3  Bacteria  normal  normal 
 
 
-
 
NC_004347  SO_0766.1  hypothetical protein  52.46 
 
 
189 aa  199  3.9999999999999996e-50  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_008709  Ping_3410  hypothetical protein  32.68 
 
 
259 aa  118  7.999999999999999e-26  Psychromonas ingrahamii 37  Bacteria  normal  normal 
 
 
-
 
NC_008345  Sfri_2544  hypothetical protein  27.44 
 
 
246 aa  86.7  4e-16  Shewanella frigidimarina NCIMB 400  Bacteria  normal  0.438759  n/a   
 
 
-
 
NC_007298  Daro_3228  hypothetical protein  29.67 
 
 
240 aa  75.5  0.0000000000008  Dechloromonas aromatica RCB  Bacteria  normal  normal 
 
 
-
 
NC_012560  Avin_33810  hypothetical protein  27.03 
 
 
266 aa  69.7  0.00000000004  Azotobacter vinelandii DJ  Bacteria  normal  0.0167034  n/a   
 
 
-
 
NC_007947  Mfla_1207  hypothetical protein  27.27 
 
 
245 aa  55.5  0.0000008  Methylobacillus flagellatus KT  Bacteria  normal  normal 
 
 
-
 
NC_003910  CPS_3934  hypothetical protein  31.79 
 
 
250 aa  55.1  0.000001  Colwellia psychrerythraea 34H  Bacteria  normal  n/a   
 
 
-
 
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