237 homologs were found in PanDaTox collection
for query gene Smed_5890 on replicon NC_009621
Organism: Sinorhizobium medicae WSM419



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_009672  Oant_4832  methylthioribose-1-phosphate isomerase  91.48 
 
 
364 aa  689    Ochrobactrum anthropi ATCC 49188  Bacteria  normal  0.633545  n/a   
 
 
-
 
NC_009621  Smed_5890  methylthioribose-1-phosphate isomerase  100 
 
 
364 aa  739    Sinorhizobium medicae WSM419  Bacteria  normal  0.0342096  normal  0.365892 
 
 
-
 
NC_007493  RSP_2386  methylthioribose-1-phosphate isomerase  71.82 
 
 
364 aa  504  9.999999999999999e-143  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  n/a   
 
 
-
 
NC_009049  Rsph17029_1050  methylthioribose-1-phosphate isomerase  71.82 
 
 
364 aa  503  1e-141  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  0.246086  normal  0.396346 
 
 
-
 
NC_009952  Dshi_0521  methylthioribose-1-phosphate isomerase  67.31 
 
 
367 aa  499  1e-140  Dinoroseobacter shibae DFL 12  Bacteria  normal  normal 
 
 
-
 
NC_009428  Rsph17025_1886  methylthioribose-1-phosphate isomerase  69.23 
 
 
362 aa  498  1e-140  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  0.876537  normal 
 
 
-
 
NC_011004  Rpal_5307  methylthioribose-1-phosphate isomerase  66.39 
 
 
374 aa  479  1e-134  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_007778  RPB_4697  methylthioribose-1-phosphate isomerase  66.67 
 
 
374 aa  478  1e-133  Rhodopseudomonas palustris HaA2  Bacteria  normal  0.293654  normal 
 
 
-
 
NC_007958  RPD_4407  methylthioribose-1-phosphate isomerase  65.56 
 
 
374 aa  473  1e-132  Rhodopseudomonas palustris BisB5  Bacteria  normal  0.791642  normal 
 
 
-
 
NC_010571  Oter_4113  aIF-2BI family translation initiation factor  66.48 
 
 
360 aa  461  1e-129  Opitutus terrae PB90-1  Bacteria  normal  normal 
 
 
-
 
NC_009485  BBta_0648  methylthioribose-1-phosphate isomerase  64.84 
 
 
367 aa  464  1e-129  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal 
 
 
-
 
NC_010505  Mrad2831_4121  aIF-2BI family translation initiation factor  63.09 
 
 
367 aa  459  9.999999999999999e-129  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal 
 
 
-
 
NC_010172  Mext_0662  aIF-2BI family translation initiation factor  63.36 
 
 
365 aa  458  9.999999999999999e-129  Methylobacterium extorquens PA1  Bacteria  normal  normal  0.437714 
 
 
-
 
NC_011757  Mchl_0674  translation initiation factor, aIF-2BI family  63.36 
 
 
365 aa  458  9.999999999999999e-129  Methylobacterium chloromethanicum CM4  Bacteria  normal  0.887106  normal  0.0224655 
 
 
-
 
NC_011666  Msil_3353  translation initiation factor, aIF-2BI family  63.09 
 
 
366 aa  460  9.999999999999999e-129  Methylocella silvestris BL2  Bacteria  n/a    normal 
 
 
-
 
NC_007925  RPC_4936  methylthioribose-1-phosphate isomerase  66.12 
 
 
373 aa  450  1e-125  Rhodopseudomonas palustris BisB18  Bacteria  normal  normal  0.313039 
 
 
-
 
NC_010581  Bind_0665  aIF-2BI family translation initiation factor  62.26 
 
 
362 aa  449  1e-125  Beijerinckia indica subsp. indica ATCC 9039  Bacteria  normal  0.360605  normal  0.588664 
 
 
-
 
NC_011894  Mnod_6703  translation initiation factor, aIF-2BI family  61.98 
 
 
364 aa  445  1.0000000000000001e-124  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_010725  Mpop_0641  translation initiation factor, aIF-2BI family  63.91 
 
 
365 aa  446  1.0000000000000001e-124  Methylobacterium populi BJ001  Bacteria  normal  normal  0.173819 
 
 
-
 
NC_009719  Plav_2247  eIF-2B alpha/beta/delta-related uncharacterized protein  62.64 
 
 
364 aa  438  9.999999999999999e-123  Parvibaculum lavamentivorans DS-1  Bacteria  normal  0.679143  normal  0.145902 
 
 
-
 
NC_011365  Gdia_0451  methylthioribose-1-phosphate isomerase  61.64 
 
 
365 aa  439  9.999999999999999e-123  Gluconacetobacter diazotrophicus PAl 5  Bacteria  normal  normal 
 
 
-
 
NC_007643  Rru_A0360  methylthioribose-1-phosphate isomerase  64.67 
 
 
390 aa  440  9.999999999999999e-123  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  n/a   
 
 
-
 
NC_010511  M446_6183  aIF-2BI family translation initiation factor  62.81 
 
 
365 aa  433  1e-120  Methylobacterium sp. 4-46  Bacteria  normal  0.995024  normal 
 
 
-
 
NC_009484  Acry_0161  methylthioribose-1-phosphate isomerase  63.29 
 
 
367 aa  422  1e-117  Acidiphilium cryptum JF-5  Bacteria  normal  n/a   
 
 
-
 
NC_008820  P9303_25341  methylthioribose-1-phosphate isomerase  59.13 
 
 
370 aa  416  9.999999999999999e-116  Prochlorococcus marinus str. MIT 9303  Bacteria  n/a    normal 
 
 
-
 
NC_007947  Mfla_1913  methylthioribose-1-phosphate isomerase  58.47 
 
 
375 aa  402  1e-111  Methylobacillus flagellatus KT  Bacteria  hitchhiker  0.000000486735  normal  0.985387 
 
 
-
 
NC_009943  Dole_1306  eIF-2B alpha/beta/delta-related protein  55.99 
 
 
369 aa  367  1e-100  Desulfococcus oleovorans Hxd3  Bacteria  hitchhiker  0.0012837  n/a   
 
 
-
 
NC_007575  Suden_1971  methylthioribose-1-phosphate isomerase  52.21 
 
 
359 aa  354  1e-96  Sulfurimonas denitrificans DSM 1251  Bacteria  normal  n/a   
 
 
-
 
NC_011662  Tmz1t_3292  methylthioribose-1-phosphate isomerase  53.54 
 
 
356 aa  344  2e-93  Thauera sp. MZ1T  Bacteria  normal  0.178535  n/a   
 
 
-
 
NC_007298  Daro_3335  methylthioribose-1-phosphate isomerase  55.49 
 
 
362 aa  341  1e-92  Dechloromonas aromatica RCB  Bacteria  normal  hitchhiker  0.000368125 
 
 
-
 
NC_013926  Aboo_1543  translation initiation factor, aIF-2BI family  48.12 
 
 
333 aa  280  2e-74  Aciduliprofundum boonei T469  Archaea  normal  0.0321135  n/a   
 
 
-
 
NC_012034  Athe_1360  translation initiation factor, aIF-2BI family  45.51 
 
 
342 aa  275  7e-73  Anaerocellum thermophilum DSM 6725  Bacteria  normal  0.0559648  n/a   
 
 
-
 
NC_009012  Cthe_0621  translation initiation factor 2B subunit I  45.88 
 
 
342 aa  275  7e-73  Clostridium thermocellum ATCC 27405  Bacteria  normal  0.0997628  n/a   
 
 
-
 
NC_009718  Fnod_1519  aIF-2BI family translation initiation factor  45.18 
 
 
350 aa  275  9e-73  Fervidobacterium nodosum Rt17-B1  Bacteria  normal  0.889993  n/a   
 
 
-
 
NC_009486  Tpet_0016  aIF-2BI family translation initiation factor  47.67 
 
 
343 aa  272  8.000000000000001e-72  Thermotoga petrophila RKU-1  Bacteria  normal  0.339634  n/a   
 
 
-
 
NC_010483  TRQ2_0016  aIF-2BI family translation initiation factor  47.67 
 
 
343 aa  272  8.000000000000001e-72  Thermotoga sp. RQ2  Bacteria  normal  0.570831  n/a   
 
 
-
 
NC_007604  Synpcc7942_1992  translation initiation factor 2B subunit I  45.75 
 
 
348 aa  271  1e-71  Synechococcus elongatus PCC 7942  Bacteria  normal  normal  0.337411 
 
 
-
 
NC_009616  Tmel_0254  aIF-2BI family translation initiation factor  45.3 
 
 
346 aa  271  1e-71  Thermosipho melanesiensis BI429  Bacteria  normal  n/a   
 
 
-
 
NC_011831  Cagg_3560  translation initiation factor, aIF-2BI family  46.44 
 
 
357 aa  270  2e-71  Chloroflexus aggregans DSM 9485  Bacteria  normal  normal 
 
 
-
 
NC_009767  Rcas_0156  eIF-2B alpha/beta/delta-related uncharacterized protein  48.31 
 
 
354 aa  271  2e-71  Roseiflexus castenholzii DSM 13941  Bacteria  normal  0.232234  normal 
 
 
-
 
NC_009483  Gura_4322  aIF-2BI family translation initiation factor  45.79 
 
 
346 aa  267  2e-70  Geobacter uraniireducens Rf4  Bacteria  normal  0.394096  n/a   
 
 
-
 
NC_009523  RoseRS_0485  aIF-2BI family translation initiation factor  47.59 
 
 
353 aa  267  2e-70  Roseiflexus sp. RS-1  Bacteria  normal  0.646058  normal 
 
 
-
 
NC_010003  Pmob_0810  aIF-2BI family translation initiation factor  44.92 
 
 
349 aa  266  4e-70  Petrotoga mobilis SJ95  Bacteria  normal  n/a   
 
 
-
 
NC_007908  Rfer_3749  putative translation initiation factor, aIF-2BI/5-methylthioribose-1-phosphate isomerase  46.38 
 
 
354 aa  263  4e-69  Rhodoferax ferrireducens T118  Bacteria  normal  n/a   
 
 
-
 
NC_008009  Acid345_1175  translation initiation factor 2B subunit I  44.86 
 
 
354 aa  263  4e-69  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  normal 
 
 
-
 
NC_014212  Mesil_1647  translation initiation factor, aIF-2BI family  47.04 
 
 
329 aa  259  3e-68  Meiothermus silvanus DSM 9946  Bacteria  normal  normal 
 
 
-
 
NC_007517  Gmet_0072  translation initiation factor 2B subunit I  45.35 
 
 
346 aa  258  9e-68  Geobacter metallireducens GS-15  Bacteria  normal  normal  0.25912 
 
 
-
 
NC_009972  Haur_2349  aIF-2BI family translation initiation factor  44.7 
 
 
358 aa  257  3e-67  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  0.944221  n/a   
 
 
-
 
NC_011884  Cyan7425_3816  methylthioribose-1-phosphate isomerase  46.01 
 
 
350 aa  256  5e-67  Cyanothece sp. PCC 7425  Bacteria  normal  normal  0.732544 
 
 
-
 
NC_013946  Mrub_0999  aIF-2BI family translation initiation factor  47.09 
 
 
327 aa  255  9e-67  Meiothermus ruber DSM 1279  Bacteria  normal  0.260098  normal 
 
 
-
 
NC_008609  Ppro_0510  aIF-2BI family translation initiation factor  44.73 
 
 
346 aa  254  2.0000000000000002e-66  Pelobacter propionicus DSM 2379  Bacteria  normal  n/a   
 
 
-
 
NC_007519  Dde_0076  translation initiation factor 2B subunit I  46.13 
 
 
355 aa  253  3e-66  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  normal  n/a   
 
 
-
 
NC_002939  GSU3379  aIF-2BI family translation initiation factor  43.09 
 
 
346 aa  252  7e-66  Geobacter sulfurreducens PCA  Bacteria  normal  n/a   
 
 
-
 
NC_013223  Dret_0503  translation initiation factor, aIF-2BI family  42.53 
 
 
350 aa  252  8.000000000000001e-66  Desulfohalobium retbaense DSM 5692  Bacteria  normal  normal 
 
 
-
 
NC_008576  Mmc1_1944  translation initiation factor 2B subunit I  44.17 
 
 
352 aa  249  6e-65  Magnetococcus sp. MC-1  Bacteria  hitchhiker  0.00466755  normal  0.570212 
 
 
-
 
NC_012560  Avin_15800  methylthioribose-1-phosphate isomerase  45.56 
 
 
358 aa  249  6e-65  Azotobacter vinelandii DJ  Bacteria  normal  n/a   
 
 
-
 
NC_010730  SYO3AOP1_0676  translation initiation factor, aIF-2BI family  43.47 
 
 
339 aa  248  9e-65  Sulfurihydrogenibium sp. YO3AOP1  Bacteria  normal  0.0103604  n/a   
 
 
-
 
NC_009634  Mevan_0927  aIF-2BI family translation initiation factor  41.57 
 
 
323 aa  248  9e-65  Methanococcus vannielii SB  Archaea  normal  n/a   
 
 
-
 
NC_011830  Dhaf_3765  translation initiation factor, aIF-2BI family  47.46 
 
 
345 aa  248  1e-64  Desulfitobacterium hafniense DCB-2  Bacteria  normal  0.0692423  n/a   
 
 
-
 
NC_011729  PCC7424_4687  methylthioribose-1-phosphate isomerase  43.34 
 
 
350 aa  248  1e-64  Cyanothece sp. PCC 7424  Bacteria  n/a    normal 
 
 
-
 
NC_008463  PA14_23250  methylthioribose-1-phosphate isomerase  44.38 
 
 
358 aa  247  2e-64  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  hitchhiker  0.0078361 
 
 
-
 
NC_009675  Anae109_4334  eIF-2B alpha/beta/delta-related uncharacterized protein  45.7 
 
 
337 aa  247  2e-64  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  normal 
 
 
-
 
NC_011772  BCG9842_B4924  methylthioribose-1-phosphate isomerase  43.75 
 
 
348 aa  248  2e-64  Bacillus cereus G9842  Bacteria  normal  0.64519  normal 
 
 
-
 
NC_011725  BCB4264_A0394  methylthioribose-1-phosphate isomerase  43.38 
 
 
348 aa  246  3e-64  Bacillus cereus B4264  Bacteria  normal  n/a   
 
 
-
 
NC_011658  BCAH187_A0441  methylthioribose-1-phosphate isomerase  43.47 
 
 
348 aa  246  3e-64  Bacillus cereus AH187  Bacteria  normal  n/a   
 
 
-
 
NC_007413  Ava_3544  methylthioribose-1-phosphate isomerase  43.18 
 
 
347 aa  246  4e-64  Anabaena variabilis ATCC 29413  Bacteria  normal  normal 
 
 
-
 
NC_010814  Glov_3596  translation initiation factor, aIF-2BI family  43.59 
 
 
346 aa  246  6e-64  Geobacter lovleyi SZ  Bacteria  normal  0.82629  n/a   
 
 
-
 
NC_006274  BCZK0319  methylthioribose-1-phosphate isomerase  43.75 
 
 
347 aa  244  9.999999999999999e-64  Bacillus cereus E33L  Bacteria  normal  n/a   
 
 
-
 
NC_010718  Nther_0419  translation initiation factor 2B subunit I family (IF-2BI)  42.31 
 
 
347 aa  245  9.999999999999999e-64  Natranaerobius thermophilus JW/NM-WN-LF  Bacteria  normal  0.04546  normal 
 
 
-
 
NC_010184  BcerKBAB4_0327  methylthioribose-1-phosphate isomerase  43.47 
 
 
348 aa  245  9.999999999999999e-64  Bacillus weihenstephanensis KBAB4  Bacteria  normal  n/a   
 
 
-
 
NC_009656  PSPA7_1960  methylthioribose-1-phosphate isomerase  44.38 
 
 
358 aa  245  9.999999999999999e-64  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_009635  Maeo_0027  aIF-2BI family translation initiation factor  41.31 
 
 
337 aa  244  9.999999999999999e-64  Methanococcus aeolicus Nankai-3  Archaea  normal  n/a   
 
 
-
 
NC_005945  BAS0332  methylthioribose-1-phosphate isomerase  43.47 
 
 
348 aa  244  1.9999999999999999e-63  Bacillus anthracis str. Sterne  Bacteria  normal  n/a   
 
 
-
 
NC_011773  BCAH820_0379  methylthioribose-1-phosphate isomerase  43.47 
 
 
348 aa  244  1.9999999999999999e-63  Bacillus cereus AH820  Bacteria  n/a    normal 
 
 
-
 
NC_007530  GBAA_0347  methylthioribose-1-phosphate isomerase  43.47 
 
 
347 aa  244  1.9999999999999999e-63  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  n/a   
 
 
-
 
NC_011899  Hore_18480  putative translation initiation factor, aIF-2BI family  43.98 
 
 
355 aa  244  1.9999999999999999e-63  Halothermothrix orenii H 168  Bacteria  normal  0.0224403  n/a   
 
 
-
 
NC_011769  DvMF_2235  translation initiation factor, aIF-2BI family  44.54 
 
 
350 aa  244  1.9999999999999999e-63  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal 
 
 
-
 
NC_014248  Aazo_1643  translation initiation factor  44.54 
 
 
344 aa  244  1.9999999999999999e-63  'Nostoc azollae' 0708  Bacteria  normal  0.226672  n/a   
 
 
-
 
NC_008312  Tery_2078  methylthioribose-1-phosphate isomerase  42.44 
 
 
353 aa  243  3.9999999999999997e-63  Trichodesmium erythraeum IMS101  Bacteria  normal  normal  0.424406 
 
 
-
 
NC_005957  BT9727_0316  methylthioribose-1-phosphate isomerase  43.18 
 
 
348 aa  241  1e-62  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  normal  n/a   
 
 
-
 
NC_007513  Syncc9902_1844  initiation factor 2B alpha/beta/delta  44.87 
 
 
335 aa  241  1e-62  Synechococcus sp. CC9902  Bacteria  normal  n/a   
 
 
-
 
NC_010424  Daud_0648  aIF-2BI family translation initiation factor  45.45 
 
 
348 aa  241  2e-62  Candidatus Desulforudis audaxviator MP104C  Bacteria  normal  0.674044  n/a   
 
 
-
 
NC_008751  Dvul_2877  eIF-2B alpha/beta/delta-related uncharacterized proteins  44.31 
 
 
350 aa  240  2.9999999999999997e-62  Desulfovibrio vulgaris DP4  Bacteria  normal  normal 
 
 
-
 
NC_012793  GWCH70_0846  methylthioribose-1-phosphate isomerase  42.21 
 
 
356 aa  240  2.9999999999999997e-62  Geobacillus sp. WCH70  Bacteria  normal  n/a   
 
 
-
 
NC_010085  Nmar_0169  aIF-2BI family translation initiation factor  41.21 
 
 
345 aa  238  1e-61  Nitrosopumilus maritimus SCM1  Archaea  n/a    hitchhiker  0.00178496 
 
 
-
 
NC_013440  Hoch_6765  translation initiation factor, aIF-2BI family  44.54 
 
 
369 aa  238  1e-61  Haliangium ochraceum DSM 14365  Bacteria  normal  normal 
 
 
-
 
NC_010320  Teth514_1881  aIF-2BI family translation initiation factor  43.75 
 
 
345 aa  238  1e-61  Thermoanaerobacter sp. X514  Bacteria  normal  n/a   
 
 
-
 
NC_011146  Gbem_3646  translation initiation factor, aIF-2BI family  45.79 
 
 
346 aa  238  1e-61  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_011126  HY04AAS1_0595  translation initiation factor, aIF-2BI family  42.99 
 
 
328 aa  238  1e-61  Hydrogenobaculum sp. Y04AAS1  Bacteria  normal  n/a   
 
 
-
 
NC_009135  MmarC5_1791  translation initiation factor 2B subunit I  43.79 
 
 
321 aa  238  1e-61  Methanococcus maripaludis C5  Archaea  normal  n/a   
 
 
-
 
NC_003909  BCE_4098  methylthioribose-1-phosphate isomerase  40.59 
 
 
351 aa  238  2e-61  Bacillus cereus ATCC 10987  Bacteria  normal  0.463174  n/a   
 
 
-
 
NC_009637  MmarC7_0865  aIF-2BI family translation initiation factor  43.79 
 
 
321 aa  237  3e-61  Methanococcus maripaludis C7  Archaea  normal  normal  0.0114166 
 
 
-
 
NC_013510  Tcur_1971  translation initiation factor, aIF-2BI family  42.09 
 
 
345 aa  237  3e-61  Thermomonospora curvata DSM 43183  Bacteria  hitchhiker  0.00568517  n/a   
 
 
-
 
NC_013385  Adeg_0964  translation initiation factor, aIF-2BI family  47.18 
 
 
351 aa  237  3e-61  Ammonifex degensii KC4  Bacteria  normal  0.518904  n/a   
 
 
-
 
NC_012918  GM21_3753  translation initiation factor, aIF-2BI family  45.79 
 
 
346 aa  236  5.0000000000000005e-61  Geobacter sp. M21  Bacteria  n/a    normal 
 
 
-
 
NC_005957  BT9727_3774  methylthioribose-1-phosphate isomerase  40 
 
 
351 aa  236  6e-61  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  normal  n/a   
 
 
-
 
NC_013501  Rmar_1491  translation initiation factor, aIF-2BI family  44.63 
 
 
353 aa  235  7e-61  Rhodothermus marinus DSM 4252  Bacteria  normal  0.626941  n/a   
 
 
-
 
NC_007498  Pcar_2170  aIF-2BI family translation initiation factor  46.72 
 
 
344 aa  235  7e-61  Pelobacter carbinolicus DSM 2380  Bacteria  normal  n/a   
 
 
-
 
NC_011773  BCAH820_4053  methylthioribose-1-phosphate isomerase  40 
 
 
351 aa  235  7e-61  Bacillus cereus AH820  Bacteria  n/a    normal 
 
 
-
 
NC_009253  Dred_2064  aIF-2BI family translation initiation factor  44.96 
 
 
346 aa  235  7e-61  Desulfotomaculum reducens MI-1  Bacteria  unclonable  0.0000000777983  n/a   
 
 
-
 
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