More than 300 homologs were found in PanDaTox collection
for query gene Smed_5086 on replicon NC_009621
Organism: Sinorhizobium medicae WSM419



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_009717  Xaut_5021  methylmalonyl-CoA mutase, large subunit  58.77 
 
 
562 aa  672    Xanthobacter autotrophicus Py2  Bacteria  normal  0.749996  normal 
 
 
-
 
NC_009621  Smed_5086  methylmalonyl-CoA mutase, large subunit  100 
 
 
545 aa  1133    Sinorhizobium medicae WSM419  Bacteria  normal  normal 
 
 
-
 
NC_008826  Mpe_B0541  methylmalonyl-CoA mutase  58.4 
 
 
562 aa  678    Methylibium petroleiphilum PM1  Bacteria  normal  0.46948  hitchhiker  0.00133344 
 
 
-
 
NC_009050  Rsph17029_3657  methylmalonyl-CoA mutase, large subunit  60.04 
 
 
563 aa  687    Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  0.748454  normal  0.0699604 
 
 
-
 
NC_008699  Noca_2131  methylmalonyl-CoA mutase  54.85 
 
 
569 aa  632  1e-180  Nocardioides sp. JS614  Bacteria  normal  n/a   
 
 
-
 
NC_010718  Nther_1486  methylmalonyl-CoA mutase  49.44 
 
 
559 aa  552  1e-156  Natranaerobius thermophilus JW/NM-WN-LF  Bacteria  normal  normal  0.220657 
 
 
-
 
NC_009718  Fnod_1752  methylmalonyl-CoA mutase, large subunit  50.09 
 
 
554 aa  545  1e-154  Fervidobacterium nodosum Rt17-B1  Bacteria  normal  n/a   
 
 
-
 
NC_009767  Rcas_4326  methylmalonyl-CoA mutase, large subunit  48.8 
 
 
563 aa  546  1e-154  Roseiflexus castenholzii DSM 13941  Bacteria  normal  0.273661  normal 
 
 
-
 
NC_013739  Cwoe_0843  methylmalonyl-CoA mutase, large subunit  49.63 
 
 
550 aa  545  1e-154  Conexibacter woesei DSM 14684  Bacteria  normal  normal  0.511417 
 
 
-
 
NC_009523  RoseRS_0214  methylmalonyl-CoA mutase, large subunit  48.61 
 
 
557 aa  546  1e-154  Roseiflexus sp. RS-1  Bacteria  normal  normal 
 
 
-
 
NC_010320  Teth514_1855  methylmalonyl-CoA mutase, large subunit  49.62 
 
 
560 aa  543  1e-153  Thermoanaerobacter sp. X514  Bacteria  normal  n/a   
 
 
-
 
NC_013525  Tter_1622  methylmalonyl-CoA mutase, large subunit  49.24 
 
 
521 aa  541  9.999999999999999e-153  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_007760  Adeh_1834  methylmalonyl-CoA mutase  49.44 
 
 
588 aa  533  1e-150  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  0.243116  n/a   
 
 
-
 
NC_009616  Tmel_1860  methylmalonyl-CoA mutase, large subunit  46.79 
 
 
559 aa  531  1e-150  Thermosipho melanesiensis BI429  Bacteria  decreased coverage  0.0000937746  n/a   
 
 
-
 
NC_008148  Rxyl_2481  methylmalonyl-CoA mutase  48.78 
 
 
565 aa  533  1e-150  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  n/a   
 
 
-
 
NC_011145  AnaeK_2026  methylmalonyl-CoA mutase, large subunit  49.72 
 
 
588 aa  534  1e-150  Anaeromyxobacter sp. K  Bacteria  normal  n/a   
 
 
-
 
NC_013926  Aboo_1362  methylmalonyl-CoA mutase, large subunit  48.71 
 
 
559 aa  529  1e-149  Aciduliprofundum boonei T469  Archaea  hitchhiker  0.0000000005041  n/a   
 
 
-
 
NC_011891  A2cp1_2096  methylmalonyl-CoA mutase, large subunit  49.35 
 
 
588 aa  531  1e-149  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  n/a   
 
 
-
 
NC_013743  Htur_1102  methylmalonyl-CoA mutase, large subunit  47.52 
 
 
566 aa  531  1e-149  Haloterrigena turkmenica DSM 5511  Archaea  n/a    n/a   
 
 
-
 
NC_009972  Haur_3380  methylmalonyl-CoA mutase, large subunit  48.06 
 
 
559 aa  528  1e-148  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  n/a   
 
 
-
 
NC_013202  Hmuk_2165  methylmalonyl-CoA mutase, large subunit  46.89 
 
 
567 aa  526  1e-148  Halomicrobium mukohataei DSM 12286  Archaea  normal  normal 
 
 
-
 
NC_013922  Nmag_0817  methylmalonyl-CoA mutase, large subunit  46.79 
 
 
566 aa  527  1e-148  Natrialba magadii ATCC 43099  Archaea  normal  0.950939  n/a   
 
 
-
 
NC_010003  Pmob_0549  methylmalonyl-CoA mutase, large subunit  46.88 
 
 
559 aa  528  1e-148  Petrotoga mobilis SJ95  Bacteria  normal  n/a   
 
 
-
 
NC_013522  Taci_0288  methylmalonyl-CoA mutase, large subunit  46.79 
 
 
559 aa  525  1e-148  Thermanaerovibrio acidaminovorans DSM 6589  Bacteria  normal  n/a   
 
 
-
 
NC_013525  Tter_1672  methylmalonyl-CoA mutase, large subunit  48.24 
 
 
570 aa  523  1e-147  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_008148  Rxyl_1283  methylmalonyl-CoA mutase  47.78 
 
 
531 aa  523  1e-147  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  n/a   
 
 
-
 
NC_013440  Hoch_5723  methylmalonyl-CoA mutase, large subunit  48.31 
 
 
543 aa  523  1e-147  Haliangium ochraceum DSM 14365  Bacteria  normal  0.974466  normal 
 
 
-
 
NC_012029  Hlac_1182  methylmalonyl-CoA mutase, large subunit  46.69 
 
 
566 aa  522  1e-147  Halorubrum lacusprofundi ATCC 49239  Archaea  normal  hitchhiker  0.00000166 
 
 
-
 
NC_008009  Acid345_1023  methylmalonyl-CoA mutase  46.79 
 
 
542 aa  519  1e-146  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  normal  0.85938 
 
 
-
 
NC_013744  Htur_4362  methylmalonyl-CoA mutase, large subunit  45.67 
 
 
566 aa  521  1e-146  Haloterrigena turkmenica DSM 5511  Archaea  normal  0.15027  n/a   
 
 
-
 
CP001800  Ssol_0229  methylmalonyl-CoA mutase, large subunit  46.1 
 
 
553 aa  515  1.0000000000000001e-145  Sulfolobus solfataricus 98/2  Archaea  normal  n/a   
 
 
-
 
NC_009483  Gura_0654  methylmalonyl-CoA mutase, large subunit  46.59 
 
 
551 aa  516  1.0000000000000001e-145  Geobacter uraniireducens Rf4  Bacteria  hitchhiker  0.000145738  n/a   
 
 
-
 
NC_013744  Htur_3831  methylmalonyl-CoA mutase, large subunit  45.86 
 
 
566 aa  517  1.0000000000000001e-145  Haloterrigena turkmenica DSM 5511  Archaea  normal  n/a   
 
 
-
 
NC_011830  Dhaf_2691  methylmalonyl-CoA mutase, large subunit  46.65 
 
 
545 aa  518  1.0000000000000001e-145  Desulfitobacterium hafniense DCB-2  Bacteria  normal  n/a   
 
 
-
 
NC_012918  GM21_0572  methylmalonyl-CoA mutase, large subunit  47.12 
 
 
550 aa  516  1.0000000000000001e-145  Geobacter sp. M21  Bacteria  n/a    hitchhiker  0.0000000000000115409 
 
 
-
 
NC_009675  Anae109_0281  methylmalonyl-CoA mutase, large subunit  45.77 
 
 
549 aa  518  1.0000000000000001e-145  Anaeromyxobacter sp. Fw109-5  Bacteria  decreased coverage  0.000219849  normal  0.200381 
 
 
-
 
NC_008009  Acid345_1454  methylmalonyl-CoA mutase  45.88 
 
 
599 aa  514  1e-144  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  normal 
 
 
-
 
NC_013743  Htur_1992  methylmalonyl-CoA mutase, large subunit  47.95 
 
 
560 aa  513  1e-144  Haloterrigena turkmenica DSM 5511  Archaea  n/a    n/a   
 
 
-
 
NC_007517  Gmet_3251  methylmalonyl-CoA mutase  46.68 
 
 
552 aa  509  1e-143  Geobacter metallireducens GS-15  Bacteria  normal  0.34428  hitchhiker  0.00000000000000179062 
 
 
-
 
NC_013216  Dtox_1909  methylmalonyl-CoA mutase, large subunit  46.05 
 
 
560 aa  509  1e-143  Desulfotomaculum acetoxidans DSM 771  Bacteria  normal  0.699759  normal  0.051216 
 
 
-
 
NC_008554  Sfum_0458  methylmalonyl-CoA mutase, large subunit  45.62 
 
 
559 aa  509  1e-143  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  0.484451  normal  0.420898 
 
 
-
 
NC_014212  Mesil_1720  methylmalonyl-CoA mutase, large subunit  46.84 
 
 
551 aa  511  1e-143  Meiothermus silvanus DSM 9946  Bacteria  normal  normal 
 
 
-
 
NC_002939  GSU3302  methylmalonyl-CoA mutase, putative  46.4 
 
 
552 aa  506  9.999999999999999e-143  Geobacter sulfurreducens PCA  Bacteria  unclonable  0.00398466  n/a   
 
 
-
 
NC_013946  Mrub_0698  methylmalonyl-CoA mutase large subunit  47.03 
 
 
551 aa  506  9.999999999999999e-143  Meiothermus ruber DSM 1279  Bacteria  normal  normal 
 
 
-
 
NC_011145  AnaeK_0270  methylmalonyl-CoA mutase, large subunit  46.88 
 
 
549 aa  506  9.999999999999999e-143  Anaeromyxobacter sp. K  Bacteria  normal  n/a   
 
 
-
 
NC_013132  Cpin_6260  methylmalonyl-CoA mutase, large subunit  46.24 
 
 
517 aa  506  9.999999999999999e-143  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal  0.593051 
 
 
-
 
NC_009253  Dred_1768  methylmalonyl-CoA mutase, large subunit  45.54 
 
 
560 aa  508  9.999999999999999e-143  Desulfotomaculum reducens MI-1  Bacteria  normal  0.0288235  n/a   
 
 
-
 
NC_011891  A2cp1_0281  methylmalonyl-CoA mutase, large subunit  46.69 
 
 
549 aa  505  1e-141  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  decreased coverage  0.0034305  n/a   
 
 
-
 
NC_011831  Cagg_2545  methylmalonyl-CoA mutase, large subunit  46.9 
 
 
564 aa  503  1e-141  Chloroflexus aggregans DSM 9485  Bacteria  normal  0.80132  normal 
 
 
-
 
NC_007760  Adeh_0259  methylmalonyl-CoA mutase  46.31 
 
 
549 aa  503  1e-141  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  0.101753  n/a   
 
 
-
 
NC_009675  Anae109_1988  methylmalonyl-CoA mutase, large subunit  48.42 
 
 
588 aa  503  1e-141  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  normal 
 
 
-
 
NC_008609  Ppro_0523  methylmalonyl-CoA mutase, large subunit  46.68 
 
 
551 aa  504  1e-141  Pelobacter propionicus DSM 2379  Bacteria  unclonable  0.000000113835  n/a   
 
 
-
 
NC_010085  Nmar_0954  methylmalonyl-CoA mutase large subunit  46.53 
 
 
532 aa  501  1e-141  Nitrosopumilus maritimus SCM1  Archaea  n/a    hitchhiker  0.00417375 
 
 
-
 
NC_009483  Gura_3481  methylmalonyl-CoA mutase, large subunit  44.63 
 
 
551 aa  500  1e-140  Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
NC_013124  Afer_0726  methylmalonyl-CoA mutase, large subunit  48.36 
 
 
526 aa  500  1e-140  Acidimicrobium ferrooxidans DSM 10331  Bacteria  normal  n/a   
 
 
-
 
NC_013202  Hmuk_2889  methylmalonyl-CoA mutase, large subunit  47.15 
 
 
560 aa  500  1e-140  Halomicrobium mukohataei DSM 12286  Archaea  normal  0.0576126  normal  0.895278 
 
 
-
 
NC_013922  Nmag_0558  methylmalonyl-CoA mutase, large subunit  46.49 
 
 
560 aa  498  1e-140  Natrialba magadii ATCC 43099  Archaea  normal  n/a   
 
 
-
 
NC_008025  Dgeo_0862  methylmalonyl-CoA mutase, alpha subunit  46.53 
 
 
548 aa  495  1e-139  Deinococcus geothermalis DSM 11300  Bacteria  normal  normal  0.473507 
 
 
-
 
NC_009440  Msed_0638  methylmalonyl-CoA mutase  44.92 
 
 
553 aa  497  1e-139  Metallosphaera sedula DSM 5348  Archaea  normal  normal  0.187219 
 
 
-
 
NC_008578  Acel_0674  methylmalonyl-CoA mutase  48.11 
 
 
555 aa  497  1e-139  Acidothermus cellulolyticus 11B  Bacteria  normal  normal 
 
 
-
 
NC_013131  Caci_0774  methylmalonyl-CoA mutase, large subunit  46.73 
 
 
527 aa  498  1e-139  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.817325  normal  0.286297 
 
 
-
 
NC_013440  Hoch_3688  methylmalonyl-CoA mutase, large subunit  47.34 
 
 
537 aa  491  1e-137  Haliangium ochraceum DSM 14365  Bacteria  normal  normal  0.0115893 
 
 
-
 
NC_009953  Sare_3989  methylmalonyl-CoA mutase, large subunit  45.52 
 
 
562 aa  491  1e-137  Salinispora arenicola CNS-205  Bacteria  normal  hitchhiker  0.000975641 
 
 
-
 
NC_009380  Strop_0832  methylmalonyl-CoA mutase, large subunit  44.3 
 
 
547 aa  489  1e-137  Salinispora tropica CNB-440  Bacteria  normal  0.682429  normal  0.0142114 
 
 
-
 
NC_009953  Sare_0776  methylmalonyl-CoA mutase, large subunit  44.89 
 
 
527 aa  488  1e-136  Salinispora arenicola CNS-205  Bacteria  normal  normal  0.140535 
 
 
-
 
NC_012029  Hlac_1016  methylmalonyl-CoA mutase, large subunit  44.24 
 
 
558 aa  487  1e-136  Halorubrum lacusprofundi ATCC 49239  Archaea  normal  0.172359  normal 
 
 
-
 
NC_009380  Strop_3608  methylmalonyl-CoA mutase, large subunit  45.15 
 
 
562 aa  485  1e-136  Salinispora tropica CNB-440  Bacteria  normal  0.898932  normal  0.283748 
 
 
-
 
NC_013124  Afer_1791  methylmalonyl-CoA mutase, large subunit  46.85 
 
 
556 aa  485  1e-135  Acidimicrobium ferrooxidans DSM 10331  Bacteria  normal  0.0908947  n/a   
 
 
-
 
NC_013947  Snas_0775  methylmalonyl-CoA mutase large subunit  45.21 
 
 
526 aa  482  1e-135  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal 
 
 
-
 
NC_013946  Mrub_0930  methylmalonyl-CoA mutase large subunit  47.18 
 
 
518 aa  481  1e-134  Meiothermus ruber DSM 1279  Bacteria  normal  normal  0.380206 
 
 
-
 
NC_014212  Mesil_1549  methylmalonyl-CoA mutase, large subunit  46.57 
 
 
529 aa  481  1e-134  Meiothermus silvanus DSM 9946  Bacteria  normal  0.815883  normal 
 
 
-
 
NC_013595  Sros_1703  Methylmalonyl-CoA mutase  46.52 
 
 
555 aa  480  1e-134  Streptosporangium roseum DSM 43021  Bacteria  normal  normal  0.236995 
 
 
-
 
NC_008699  Noca_1802  methylmalonyl-CoA mutase  46.07 
 
 
562 aa  480  1e-134  Nocardioides sp. JS614  Bacteria  normal  0.241911  n/a   
 
 
-
 
NC_013947  Snas_1393  methylmalonyl-CoA mutase large subunit  43.3 
 
 
578 aa  477  1e-133  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal 
 
 
-
 
NC_013131  Caci_1274  methylmalonyl-CoA mutase, large subunit  43.39 
 
 
563 aa  473  1e-132  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_008726  Mvan_4261  methylmalonyl-CoA mutase, large subunit  45.14 
 
 
529 aa  464  1e-129  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  normal  0.440573 
 
 
-
 
NC_014210  Ndas_0363  methylmalonyl-CoA mutase, large subunit  44.32 
 
 
575 aa  464  1e-129  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  normal 
 
 
-
 
NC_009338  Mflv_2387  methylmalonyl-CoA mutase, large subunit  44.57 
 
 
557 aa  464  1e-129  Mycobacterium gilvum PYR-GCK  Bacteria  normal  0.415653  normal 
 
 
-
 
NC_013739  Cwoe_5523  methylmalonyl-CoA mutase, large subunit  43.93 
 
 
537 aa  461  9.999999999999999e-129  Conexibacter woesei DSM 14684  Bacteria  normal  normal 
 
 
-
 
NC_013235  Namu_3099  methylmalonyl-CoA mutase, large subunit  44.63 
 
 
567 aa  461  9.999999999999999e-129  Nakamurella multipartita DSM 44233  Bacteria  hitchhiker  0.000000149706  hitchhiker  0.00000336315 
 
 
-
 
NC_009972  Haur_4552  methylmalonyl-CoA mutase, large subunit  45.75 
 
 
521 aa  459  9.999999999999999e-129  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  n/a   
 
 
-
 
NC_009921  Franean1_4310  methylmalonyl-CoA mutase, large subunit  43.24 
 
 
525 aa  457  1e-127  Frankia sp. EAN1pec  Bacteria  normal  normal  0.57946 
 
 
-
 
NC_013061  Phep_3607  methylmalonyl-CoA mutase, large subunit  43.98 
 
 
515 aa  457  1e-127  Pedobacter heparinus DSM 2366  Bacteria  normal  normal 
 
 
-
 
NC_008146  Mmcs_3826  methylmalonyl-CoA mutase  44.57 
 
 
559 aa  456  1e-127  Mycobacterium sp. MCS  Bacteria  normal  0.642912  n/a   
 
 
-
 
NC_008705  Mkms_3900  methylmalonyl-CoA mutase  44.57 
 
 
548 aa  456  1e-127  Mycobacterium sp. KMS  Bacteria  normal  normal 
 
 
-
 
NC_009049  Rsph17029_0867  methylmalonyl-CoA mutase  44.26 
 
 
709 aa  456  1e-127  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  0.134958  normal 
 
 
-
 
NC_009077  Mjls_3812  methylmalonyl-CoA mutase  44.57 
 
 
548 aa  458  1e-127  Mycobacterium sp. JLS  Bacteria  normal  0.887759  normal  0.207369 
 
 
-
 
NC_007493  RSP_2192  methylmalonyl-CoA mutase  44.07 
 
 
709 aa  453  1.0000000000000001e-126  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  0.172259  n/a   
 
 
-
 
NC_011992  Dtpsy_1849  methylmalonyl-CoA mutase  43.57 
 
 
720 aa  453  1.0000000000000001e-126  Acidovorax ebreus TPSY  Bacteria  normal  n/a   
 
 
-
 
NC_009511  Swit_2891  methylmalonyl-CoA mutase  43.07 
 
 
716 aa  454  1.0000000000000001e-126  Sphingomonas wittichii RW1  Bacteria  normal  normal  0.17991 
 
 
-
 
NC_008781  Pnap_2383  methylmalonyl-CoA mutase  43.89 
 
 
718 aa  452  1.0000000000000001e-126  Polaromonas naphthalenivorans CJ2  Bacteria  normal  normal 
 
 
-
 
NC_008782  Ajs_2040  methylmalonyl-CoA mutase  43.57 
 
 
720 aa  452  1.0000000000000001e-126  Acidovorax sp. JS42  Bacteria  normal  normal 
 
 
-
 
NC_010524  Lcho_2697  methylmalonyl-CoA mutase  44.25 
 
 
720 aa  449  1e-125  Leptothrix cholodnii SP-6  Bacteria  n/a    normal  0.20812 
 
 
-
 
NC_004310  BR1190  methylmalonyl-CoA mutase  42.91 
 
 
712 aa  449  1e-125  Brucella suis 1330  Bacteria  normal  0.942727  n/a   
 
 
-
 
NC_009667  Oant_2001  methylmalonyl-CoA mutase  42.65 
 
 
714 aa  447  1.0000000000000001e-124  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  n/a   
 
 
-
 
NC_007298  Daro_4006  methylmalonyl-CoA mutase  42.99 
 
 
716 aa  448  1.0000000000000001e-124  Dechloromonas aromatica RCB  Bacteria  normal  normal 
 
 
-
 
NC_010002  Daci_3753  methylmalonyl-CoA mutase  44.04 
 
 
738 aa  447  1.0000000000000001e-124  Delftia acidovorans SPH-1  Bacteria  normal  0.801598  normal  0.879758 
 
 
-
 
NC_007794  Saro_0811  methylmalonyl-CoA mutase  42.43 
 
 
714 aa  446  1.0000000000000001e-124  Novosphingobium aromaticivorans DSM 12444  Bacteria  normal  0.251875  n/a   
 
 
-
 
NC_007948  Bpro_2161  methylmalonyl-CoA mutase  43.7 
 
 
723 aa  442  1e-123  Polaromonas sp. JS666  Bacteria  normal  0.385791  normal  0.481947 
 
 
-
 
NC_008825  Mpe_A1014  methylmalonyl-CoA mutase  43.1 
 
 
719 aa  444  1e-123  Methylibium petroleiphilum PM1  Bacteria  normal  normal  0.856859 
 
 
-
 
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