More than 300 homologs were found in PanDaTox collection
for query gene Smed_2145 on replicon NC_009636
Organism: Sinorhizobium medicae WSM419



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_009636  Smed_2145  binding-protein-dependent transport systems inner membrane component  100 
 
 
362 aa  712    Sinorhizobium medicae WSM419  Bacteria  normal  normal 
 
 
-
 
NC_012854  Rleg_6527  binding-protein-dependent transport systems inner membrane component  79.68 
 
 
307 aa  488  1e-137  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal  0.0292278 
 
 
-
 
NC_012850  Rleg_3909  binding-protein-dependent transport systems inner membrane component  51.23 
 
 
305 aa  297  2e-79  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal  0.172275 
 
 
-
 
NC_011369  Rleg2_3621  binding-protein-dependent transport systems inner membrane component  50.88 
 
 
305 aa  294  1e-78  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.980812  normal 
 
 
-
 
NC_009620  Smed_4160  binding-protein-dependent transport systems inner membrane component  51.56 
 
 
305 aa  279  7e-74  Sinorhizobium medicae WSM419  Bacteria  normal  0.255761  normal  0.778964 
 
 
-
 
NC_013526  Tter_2496  binding-protein-dependent transport systems inner membrane component  47.02 
 
 
311 aa  275  1.0000000000000001e-72  Thermobaculum terrenum ATCC BAA-798  Bacteria  normal  n/a   
 
 
-
 
NC_013131  Caci_4992  binding-protein-dependent transport systems inner membrane component  45.42 
 
 
291 aa  218  1e-55  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.367922  normal  0.0195903 
 
 
-
 
NC_013093  Amir_2833  binding-protein-dependent transport systems inner membrane component  45.36 
 
 
315 aa  199  7e-50  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_013595  Sros_3841  sugar ABC transporter  44.79 
 
 
310 aa  196  5.000000000000001e-49  Streptosporangium roseum DSM 43021  Bacteria  normal  0.0268075  normal  0.0361307 
 
 
-
 
NC_009664  Krad_4146  binding-protein-dependent transport systems inner membrane component  39.08 
 
 
306 aa  191  2e-47  Kineococcus radiotolerans SRS30216  Bacteria  normal  normal 
 
 
-
 
NC_013526  Tter_2217  binding-protein-dependent transport systems inner membrane component  34.28 
 
 
305 aa  187  2e-46  Thermobaculum terrenum ATCC BAA-798  Bacteria  normal  n/a   
 
 
-
 
NC_012669  Bcav_2264  binding-protein-dependent transport systems inner membrane component  37.85 
 
 
307 aa  183  4.0000000000000006e-45  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.277747  normal 
 
 
-
 
NC_013131  Caci_4319  binding-protein-dependent transport systems inner membrane component  34.52 
 
 
312 aa  182  9.000000000000001e-45  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.778687  hitchhiker  0.00185272 
 
 
-
 
NC_012669  Bcav_3990  binding-protein-dependent transport systems inner membrane component  35.87 
 
 
317 aa  180  2.9999999999999997e-44  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal 
 
 
-
 
NC_008699  Noca_4634  binding-protein-dependent transport systems inner membrane component  38.87 
 
 
292 aa  177  3e-43  Nocardioides sp. JS614  Bacteria  normal  0.219562  n/a   
 
 
-
 
NC_013521  Sked_03080  permease component of ABC-type sugar transporter  39.44 
 
 
322 aa  172  5.999999999999999e-42  Sanguibacter keddieii DSM 10542  Bacteria  normal  0.151535  normal 
 
 
-
 
NC_011899  Hore_20620  binding-protein-dependent transport systems inner membrane component  32.75 
 
 
299 aa  170  4e-41  Halothermothrix orenii H 168  Bacteria  normal  n/a   
 
 
-
 
NC_008048  Sala_0750  binding-protein-dependent transport systems inner membrane component  36.1 
 
 
290 aa  170  4e-41  Sphingopyxis alaskensis RB2256  Bacteria  normal  normal 
 
 
-
 
NC_013525  Tter_0830  binding-protein-dependent transport systems inner membrane component  33.1 
 
 
309 aa  170  4e-41  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_008699  Noca_0042  binding-protein-dependent transport systems inner membrane component  35.64 
 
 
331 aa  169  5e-41  Nocardioides sp. JS614  Bacteria  normal  n/a   
 
 
-
 
NC_012669  Bcav_2875  binding-protein-dependent transport systems inner membrane component  36.9 
 
 
318 aa  169  7e-41  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.847542  normal  0.0272583 
 
 
-
 
NC_009667  Oant_0362  binding-protein-dependent transport systems inner membrane component  34.16 
 
 
312 aa  169  9e-41  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  0.541424  n/a   
 
 
-
 
NC_009523  RoseRS_1357  binding-protein-dependent transport systems inner membrane component  32.29 
 
 
316 aa  167  2e-40  Roseiflexus sp. RS-1  Bacteria  normal  normal 
 
 
-
 
NC_010816  BLD_1549  MalF-type ABC sugar transport systems permease component  34.05 
 
 
317 aa  167  2.9999999999999998e-40  Bifidobacterium longum DJO10A  Bacteria  normal  0.649517  n/a   
 
 
-
 
NC_013595  Sros_2365  sugar ABC transporter, permease protein  35.69 
 
 
288 aa  166  8e-40  Streptosporangium roseum DSM 43021  Bacteria  normal  0.216835  normal 
 
 
-
 
NC_014213  Mesil_3421  binding-protein-dependent transport systems inner membrane component  32.79 
 
 
307 aa  166  8e-40  Meiothermus silvanus DSM 9946  Bacteria  normal  0.556907  normal 
 
 
-
 
NC_013526  Tter_2208  binding-protein-dependent transport systems inner membrane component  33.12 
 
 
306 aa  166  8e-40  Thermobaculum terrenum ATCC BAA-798  Bacteria  normal  0.739705  n/a   
 
 
-
 
NC_014213  Mesil_3227  extracellular solute-binding protein family 1  32.79 
 
 
307 aa  166  8e-40  Meiothermus silvanus DSM 9946  Bacteria  decreased coverage  0.00159401  normal  0.987884 
 
 
-
 
NC_011981  Avi_7347  ABC transporter membrane spanning protein (sugar)  36.3 
 
 
320 aa  162  6e-39  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_012669  Bcav_0647  binding-protein-dependent transport systems inner membrane component  30.61 
 
 
325 aa  162  9e-39  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal 
 
 
-
 
NC_013739  Cwoe_3982  binding-protein-dependent transport systems inner membrane component  35.64 
 
 
316 aa  162  9e-39  Conexibacter woesei DSM 14684  Bacteria  normal  normal 
 
 
-
 
NC_007604  Synpcc7942_0526  ABC-type sugar transport systems permease components-like  34.74 
 
 
293 aa  160  4e-38  Synechococcus elongatus PCC 7942  Bacteria  normal  normal 
 
 
-
 
NC_013131  Caci_2623  binding-protein-dependent transport systems inner membrane component  35.27 
 
 
330 aa  160  4e-38  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.0584633  normal 
 
 
-
 
NC_013172  Bfae_29330  permease component of ABC-type sugar transporter  35.05 
 
 
321 aa  159  5e-38  Brachybacterium faecium DSM 4810  Bacteria  normal  n/a   
 
 
-
 
NC_013501  Rmar_0359  binding-protein-dependent transport systems inner membrane component  34.4 
 
 
300 aa  159  7e-38  Rhodothermus marinus DSM 4252  Bacteria  normal  n/a   
 
 
-
 
NC_012669  Bcav_1469  binding-protein-dependent transport systems inner membrane component  37.7 
 
 
283 aa  159  8e-38  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal 
 
 
-
 
NC_013595  Sros_8235  ABC transporter, permease protein  35.08 
 
 
306 aa  159  8e-38  Streptosporangium roseum DSM 43021  Bacteria  normal  normal 
 
 
-
 
NC_013235  Namu_3848  binding-protein-dependent transport systems inner membrane component  34 
 
 
320 aa  159  8e-38  Nakamurella multipartita DSM 44233  Bacteria  normal  0.0230008  normal  0.429544 
 
 
-
 
NC_011368  Rleg2_5469  binding-protein-dependent transport systems inner membrane component  33.22 
 
 
313 aa  158  1e-37  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal  0.394829 
 
 
-
 
NC_011368  Rleg2_5336  binding-protein-dependent transport systems inner membrane component  33.65 
 
 
318 aa  158  2e-37  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.949955  normal 
 
 
-
 
NC_013526  Tter_2302  binding-protein-dependent transport systems inner membrane component  33.67 
 
 
320 aa  157  2e-37  Thermobaculum terrenum ATCC BAA-798  Bacteria  normal  0.253823  n/a   
 
 
-
 
NC_009972  Haur_1151  binding-protein-dependent transport systems inner membrane component  35.68 
 
 
314 aa  157  2e-37  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  0.59424  n/a   
 
 
-
 
NC_013595  Sros_3074  sugar ABC transporter permease protein  34.7 
 
 
307 aa  158  2e-37  Streptosporangium roseum DSM 43021  Bacteria  normal  normal  0.146884 
 
 
-
 
NC_013131  Caci_7515  binding-protein-dependent transport systems inner membrane component  38.57 
 
 
314 aa  157  3e-37  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_008025  Dgeo_1168  binding-protein-dependent transport systems inner membrane component  32.5 
 
 
310 aa  157  3e-37  Deinococcus geothermalis DSM 11300  Bacteria  normal  0.155614  normal 
 
 
-
 
NC_012848  Rleg_5199  binding-protein-dependent transport systems inner membrane component  31.72 
 
 
312 aa  157  3e-37  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal  0.0867066 
 
 
-
 
NC_013526  Tter_2000  binding-protein-dependent transport systems inner membrane component  32.34 
 
 
319 aa  156  5.0000000000000005e-37  Thermobaculum terrenum ATCC BAA-798  Bacteria  normal  n/a   
 
 
-
 
NC_008262  CPR_0477  ABC tranporter, permease protein  31.68 
 
 
315 aa  155  8e-37  Clostridium perfringens SM101  Bacteria  normal  n/a   
 
 
-
 
NC_012669  Bcav_2602  binding-protein-dependent transport systems inner membrane component  35.23 
 
 
306 aa  155  8e-37  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.0924232  normal 
 
 
-
 
NC_013947  Snas_3122  binding-protein-dependent transport systems inner membrane component  34.19 
 
 
305 aa  155  1e-36  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.99861  hitchhiker  0.000381845 
 
 
-
 
NC_011884  Cyan7425_3980  binding-protein-dependent transport systems inner membrane component  35 
 
 
299 aa  155  1e-36  Cyanothece sp. PCC 7425  Bacteria  normal  hitchhiker  0.00655631 
 
 
-
 
NC_013526  Tter_2511  binding-protein-dependent transport systems inner membrane component  35.82 
 
 
317 aa  155  1e-36  Thermobaculum terrenum ATCC BAA-798  Bacteria  normal  0.10809  n/a   
 
 
-
 
NC_014210  Ndas_1084  binding-protein-dependent transport systems inner membrane component  37.02 
 
 
315 aa  154  2e-36  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  0.31256  normal  0.442716 
 
 
-
 
NC_012028  Hlac_2863  binding-protein-dependent transport systems inner membrane component  32.63 
 
 
356 aa  154  2e-36  Halorubrum lacusprofundi ATCC 49239  Archaea  n/a    n/a   
 
 
-
 
NC_012848  Rleg_5053  binding-protein-dependent transport systems inner membrane component  35.21 
 
 
318 aa  154  2e-36  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.0625824  normal 
 
 
-
 
NC_012669  Bcav_0321  binding-protein-dependent transport systems inner membrane component  32.81 
 
 
316 aa  153  2.9999999999999998e-36  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal 
 
 
-
 
NC_009664  Krad_0964  binding-protein-dependent transport systems inner membrane component  32.89 
 
 
313 aa  154  2.9999999999999998e-36  Kineococcus radiotolerans SRS30216  Bacteria  normal  0.194798  decreased coverage  0.00518822 
 
 
-
 
NC_012669  Bcav_0828  binding-protein-dependent transport systems inner membrane component  32.37 
 
 
316 aa  153  4e-36  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal  0.194369 
 
 
-
 
NC_011886  Achl_3270  binding-protein-dependent transport systems inner membrane component  33.44 
 
 
321 aa  153  5e-36  Arthrobacter chlorophenolicus A6  Bacteria  n/a    normal 
 
 
-
 
NC_012669  Bcav_0016  binding-protein-dependent transport systems inner membrane component  34.31 
 
 
311 aa  152  5.9999999999999996e-36  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.17058  normal 
 
 
-
 
NC_012669  Bcav_1297  binding-protein-dependent transport systems inner membrane component  34.39 
 
 
279 aa  152  8e-36  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.983189  normal 
 
 
-
 
NC_013526  Tter_2316  binding-protein-dependent transport systems inner membrane component  32.37 
 
 
313 aa  152  8e-36  Thermobaculum terrenum ATCC BAA-798  Bacteria  normal  n/a   
 
 
-
 
NC_013526  Tter_2573  binding-protein-dependent transport systems inner membrane component  36.14 
 
 
309 aa  152  1e-35  Thermobaculum terrenum ATCC BAA-798  Bacteria  normal  n/a   
 
 
-
 
NC_011368  Rleg2_5350  binding-protein-dependent transport systems inner membrane component  32.06 
 
 
308 aa  151  1e-35  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.84186  normal  0.48209 
 
 
-
 
NC_012669  Bcav_4197  binding-protein-dependent transport systems inner membrane component  31.37 
 
 
326 aa  152  1e-35  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.979447  normal 
 
 
-
 
NC_009565  TBFG_12339  sugar-transport integral membrane protein ABC transporter uspA  34.29 
 
 
290 aa  152  1e-35  Mycobacterium tuberculosis F11  Bacteria  normal  normal 
 
 
-
 
NC_013721  HMPREF0424_1315  ABC transporter, permease protein  33.45 
 
 
301 aa  152  1e-35  Gardnerella vaginalis 409-05  Bacteria  n/a    normal 
 
 
-
 
NC_013174  Jden_0512  binding-protein-dependent transport systems inner membrane component  31.39 
 
 
318 aa  151  2e-35  Jonesia denitrificans DSM 20603  Bacteria  hitchhiker  0.000000473727  hitchhiker  0.00124128 
 
 
-
 
NC_010483  TRQ2_0513  binding-protein-dependent transport systems inner membrane component  33.33 
 
 
285 aa  151  2e-35  Thermotoga sp. RQ2  Bacteria  normal  0.195932  n/a   
 
 
-
 
NC_011899  Hore_15550  binding-protein-dependent transport systems inner membrane component  36.18 
 
 
294 aa  151  2e-35  Halothermothrix orenii H 168  Bacteria  normal  n/a   
 
 
-
 
NC_009667  Oant_1668  binding-protein-dependent transport systems inner membrane component  33.77 
 
 
310 aa  151  2e-35  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  n/a   
 
 
-
 
NC_013526  Tter_2453  binding-protein-dependent transport systems inner membrane component  30.56 
 
 
314 aa  151  2e-35  Thermobaculum terrenum ATCC BAA-798  Bacteria  hitchhiker  0.000000200699  n/a   
 
 
-
 
NC_009767  Rcas_3564  binding-protein-dependent transport systems inner membrane component  34 
 
 
316 aa  151  2e-35  Roseiflexus castenholzii DSM 13941  Bacteria  normal  normal  0.264329 
 
 
-
 
NC_013946  Mrub_0044  binding-protein-dependent transport systems inner membrane component  34.19 
 
 
304 aa  150  3e-35  Meiothermus ruber DSM 1279  Bacteria  normal  normal 
 
 
-
 
NC_010513  Xfasm12_1606  ABC transporter sugar permease  33.68 
 
 
293 aa  150  3e-35  Xylella fastidiosa M12  Bacteria  normal  n/a   
 
 
-
 
NC_013526  Tter_2523  binding-protein-dependent transport systems inner membrane component  33.01 
 
 
309 aa  150  4e-35  Thermobaculum terrenum ATCC BAA-798  Bacteria  hitchhiker  0.00000000325465  n/a   
 
 
-
 
NC_010003  Pmob_0955  binding-protein-dependent transport systems inner membrane component  33.2 
 
 
291 aa  150  4e-35  Petrotoga mobilis SJ95  Bacteria  normal  0.0196347  n/a   
 
 
-
 
NC_013530  Xcel_2115  binding-protein-dependent transport systems inner membrane component  33.65 
 
 
319 aa  150  5e-35  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  0.438975  n/a   
 
 
-
 
NC_002977  MCA1942  sugar ABC transporter, permease protein  34.35 
 
 
287 aa  149  7e-35  Methylococcus capsulatus str. Bath  Bacteria  normal  n/a   
 
 
-
 
NC_011658  BCAH187_A0698  putative glycerol-3-phosphate ABC transporter, permease protein  30.43 
 
 
310 aa  149  8e-35  Bacillus cereus AH187  Bacteria  normal  n/a   
 
 
-
 
NC_009972  Haur_3640  binding-protein-dependent transport systems inner membrane component  33.33 
 
 
298 aa  149  8e-35  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  n/a   
 
 
-
 
NC_011881  Achl_4622  binding-protein-dependent transport systems inner membrane component  31.88 
 
 
317 aa  148  1.0000000000000001e-34  Arthrobacter chlorophenolicus A6  Bacteria  n/a    normal 
 
 
-
 
NC_011886  Achl_3567  binding-protein-dependent transport systems inner membrane component  31.31 
 
 
309 aa  149  1.0000000000000001e-34  Arthrobacter chlorophenolicus A6  Bacteria  n/a    normal 
 
 
-
 
NC_014248  Aazo_4983  binding-protein-dependent transporter inner membrane protein  31.69 
 
 
310 aa  148  1.0000000000000001e-34  'Nostoc azollae' 0708  Bacteria  normal  0.300856  n/a   
 
 
-
 
NC_010320  Teth514_0396  binding-protein-dependent transport systems inner membrane component  32.86 
 
 
307 aa  148  1.0000000000000001e-34  Thermoanaerobacter sp. X514  Bacteria  normal  0.701562  n/a   
 
 
-
 
NC_010320  Teth514_2200  binding-protein-dependent transport systems inner membrane component  33.8 
 
 
299 aa  148  1.0000000000000001e-34  Thermoanaerobacter sp. X514  Bacteria  normal  0.426381  n/a   
 
 
-
 
NC_012669  Bcav_1523  binding-protein-dependent transport systems inner membrane component  33.11 
 
 
321 aa  149  1.0000000000000001e-34  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal 
 
 
-
 
NC_010577  XfasM23_1549  binding-protein-dependent transport systems inner membrane component  33.33 
 
 
293 aa  149  1.0000000000000001e-34  Xylella fastidiosa M23  Bacteria  normal  0.563461  n/a   
 
 
-
 
NC_013172  Bfae_29440  permease component of ABC-type sugar transporter  34.28 
 
 
318 aa  148  1.0000000000000001e-34  Brachybacterium faecium DSM 4810  Bacteria  normal  n/a   
 
 
-
 
NC_010001  Cphy_3401  binding-protein-dependent transport systems inner membrane component  33.7 
 
 
305 aa  149  1.0000000000000001e-34  Clostridium phytofermentans ISDg  Bacteria  normal  0.028536  n/a   
 
 
-
 
NC_003909  BCE_0630  glycerol-3-phosphate ABC transporter, permease protein, putative  30.1 
 
 
310 aa  147  2.0000000000000003e-34  Bacillus cereus ATCC 10987  Bacteria  normal  n/a   
 
 
-
 
NC_007413  Ava_0461  binding-protein dependent transport system inner membrane protein  34.16 
 
 
301 aa  148  2.0000000000000003e-34  Anabaena variabilis ATCC 29413  Bacteria  normal  normal  0.0667876 
 
 
-
 
NC_012669  Bcav_1699  binding-protein-dependent transport systems inner membrane component  32.7 
 
 
315 aa  147  2.0000000000000003e-34  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.258357  normal 
 
 
-
 
NC_010184  BcerKBAB4_0481  binding-protein-dependent transport systems inner membrane component  31.32 
 
 
310 aa  147  2.0000000000000003e-34  Bacillus weihenstephanensis KBAB4  Bacteria  normal  n/a   
 
 
-
 
NC_013411  GYMC61_2730  binding-protein-dependent transport systems inner membrane component  32.53 
 
 
300 aa  147  2.0000000000000003e-34  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_013946  Mrub_0320  binding-protein-dependent transport systems inner membrane component  38.37 
 
 
310 aa  148  2.0000000000000003e-34  Meiothermus ruber DSM 1279  Bacteria  normal  normal 
 
 
-
 
NC_013947  Snas_0204  binding-protein-dependent transport systems inner membrane component  34.04 
 
 
299 aa  147  3e-34  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.497209  normal  0.169553 
 
 
-
 
NC_013526  Tter_2041  binding-protein-dependent transport systems inner membrane component  32.63 
 
 
305 aa  147  4.0000000000000006e-34  Thermobaculum terrenum ATCC BAA-798  Bacteria  hitchhiker  0.00457854  n/a   
 
 
-
 
NC_009486  Tpet_1680  binding-protein-dependent transport systems inner membrane component  32.86 
 
 
283 aa  146  4.0000000000000006e-34  Thermotoga petrophila RKU-1  Bacteria  hitchhiker  0.000000757089  n/a   
 
 
-
 
NC_009523  RoseRS_2819  binding-protein-dependent transport systems inner membrane component  34.9 
 
 
315 aa  147  4.0000000000000006e-34  Roseiflexus sp. RS-1  Bacteria  normal  0.0308401  normal 
 
 
-
 
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