11 homologs were found in PanDaTox collection
for query gene Smed_0214 on replicon NC_009636
Organism: Sinorhizobium medicae WSM419



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_009636  Smed_0214  hypothetical protein  100 
 
 
80 aa  156  1e-37  Sinorhizobium medicae WSM419  Bacteria  normal  normal  0.508022 
 
 
-
 
NC_010682  Rpic_1660  hypothetical protein  41.94 
 
 
74 aa  56.2  0.0000002  Ralstonia pickettii 12J  Bacteria  normal  0.98544  normal 
 
 
-
 
NC_012849  Rpic12D_5300  hypothetical protein  41.94 
 
 
74 aa  56.2  0.0000002  Ralstonia pickettii 12D  Bacteria  normal  0.470279  normal 
 
 
-
 
NC_010682  Rpic_0827  putative transmembrane protein  39.22 
 
 
68 aa  53.1  0.000001  Ralstonia pickettii 12J  Bacteria  normal  0.179582  normal 
 
 
-
 
NC_012856  Rpic12D_0898  hypothetical protein  39.22 
 
 
68 aa  53.5  0.000001  Ralstonia pickettii 12D  Bacteria  normal  0.318072  normal  0.671417 
 
 
-
 
NC_008061  Bcen_3439  hypothetical protein  38.98 
 
 
66 aa  49.7  0.00001  Burkholderia cenocepacia AU 1054  Bacteria  unclonable  0.00000000000342472  n/a   
 
 
-
 
NC_008543  Bcen2424_4928  hypothetical protein  38.98 
 
 
66 aa  49.7  0.00001  Burkholderia cenocepacia HI2424  Bacteria  decreased coverage  0.00000000124086  normal  0.0470528 
 
 
 
NC_010515  Bcenmc03_5359  hypothetical protein  38.98 
 
 
66 aa  49.7  0.00001  Burkholderia cenocepacia MC0-3  Bacteria  hitchhiker  0.0000000208864  normal  0.10332 
 
 
-
 
NC_007511  Bcep18194_B0763  hypothetical protein  40.68 
 
 
140 aa  46.6  0.0001  Burkholderia sp. 383  Bacteria  hitchhiker  0.00564104  hitchhiker  0.0000763361 
 
 
-
 
NC_008740  Maqu_0130  hypothetical protein  36.07 
 
 
75 aa  43.5  0.0009  Marinobacter aquaeolei VT8  Bacteria  normal  0.47868  n/a   
 
 
-
 
NC_013235  Namu_3036  hypothetical protein  40.54 
 
 
126 aa  41.2  0.004  Nakamurella multipartita DSM 44233  Bacteria  hitchhiker  0.0000000373375  normal  0.010036 
 
 
-
 
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