More than 300 homologs were found in PanDaTox collection
for query gene Smed_0124 on replicon NC_009636
Organism: Sinorhizobium medicae WSM419



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_009636  Smed_0124  two component transcriptional regulator  100 
 
 
227 aa  450  1.0000000000000001e-126  Sinorhizobium medicae WSM419  Bacteria  normal  normal  0.352403 
 
 
-
 
NC_011989  Avi_0485  phosphate regulon transcriptional regulatory protein PhoB  94.27 
 
 
227 aa  432  1e-120  Agrobacterium vitis S4  Bacteria  normal  0.537934  n/a   
 
 
-
 
NC_011369  Rleg2_0173  two component transcriptional regulator PhoB, winged helix family  93.83 
 
 
227 aa  431  1e-120  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.505642  normal  0.985195 
 
 
-
 
NC_012850  Rleg_0183  two component transcriptional regulator PhoB, winged helix family  92.95 
 
 
227 aa  429  1e-119  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal  0.635675 
 
 
-
 
NC_004310  BR2143  phosphate regulon transcriptional regulatory protein Phob  81.7 
 
 
228 aa  373  1e-102  Brucella suis 1330  Bacteria  normal  n/a   
 
 
-
 
NC_009505  BOV_2058  phosphate regulon transcriptional regulatory protein PhoB  81.25 
 
 
228 aa  371  1e-102  Brucella ovis ATCC 25840  Bacteria  normal  0.275433  n/a   
 
 
-
 
NC_009667  Oant_0766  two component transcriptional regulator  82.06 
 
 
228 aa  370  1e-102  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  0.0291358  n/a   
 
 
-
 
NC_008254  Meso_3116  two component transcriptional regulator  77.58 
 
 
229 aa  365  1e-100  Chelativorans sp. BNC1  Bacteria  normal  0.202822  n/a   
 
 
-
 
NC_009720  Xaut_0202  two component transcriptional regulator  78.67 
 
 
233 aa  359  2e-98  Xanthobacter autotrophicus Py2  Bacteria  normal  0.382528  normal 
 
 
-
 
NC_011894  Mnod_7423  two component transcriptional regulator PhoB, winged helix family  74.34 
 
 
234 aa  347  1e-94  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_010511  M446_6685  two component transcriptional regulator  73.45 
 
 
234 aa  344  8e-94  Methylobacterium sp. 4-46  Bacteria  normal  0.599421  normal 
 
 
-
 
NC_010172  Mext_4718  phosphate regulon transcriptional regulatory protein PhoB  72.97 
 
 
239 aa  340  7e-93  Methylobacterium extorquens PA1  Bacteria  normal  normal  0.220817 
 
 
-
 
NC_011757  Mchl_5185  two component transcriptional regulator PhoB, winged helix family  72.65 
 
 
234 aa  340  8e-93  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal  0.809056 
 
 
-
 
NC_011004  Rpal_5261  two component transcriptional regulator, winged helix family  72.25 
 
 
237 aa  339  2e-92  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.909356  n/a   
 
 
-
 
NC_007964  Nham_0640  two component transcriptional regulator  73.89 
 
 
233 aa  340  2e-92  Nitrobacter hamburgensis X14  Bacteria  normal  0.772339  n/a   
 
 
-
 
NC_009485  BBta_1991  two component transcriptional regulator  73.89 
 
 
235 aa  338  4e-92  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal 
 
 
-
 
NC_010725  Mpop_5257  two component transcriptional regulator, winged helix family  72.2 
 
 
234 aa  337  9.999999999999999e-92  Methylobacterium populi BJ001  Bacteria  normal  0.025536  normal 
 
 
-
 
NC_007925  RPC_4918  two component transcriptional regulator  72.25 
 
 
234 aa  336  1.9999999999999998e-91  Rhodopseudomonas palustris BisB18  Bacteria  normal  normal  0.134814 
 
 
-
 
NC_007406  Nwi_0511  phosphate regulon transcriptional regulatory protein phoB  72.57 
 
 
234 aa  332  3e-90  Nitrobacter winogradskyi Nb-255  Bacteria  normal  normal  0.473137 
 
 
-
 
NC_010505  Mrad2831_2339  two component transcriptional regulator  72.2 
 
 
231 aa  332  4e-90  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal 
 
 
-
 
NC_007958  RPD_0893  winged helix family two component transcriptional regulator  70.93 
 
 
233 aa  330  7.000000000000001e-90  Rhodopseudomonas palustris BisB5  Bacteria  normal  normal 
 
 
-
 
NC_007778  RPB_0781  two component transcriptional regulator  70.93 
 
 
233 aa  330  9e-90  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal  0.174075 
 
 
-
 
NC_010581  Bind_3413  two component transcriptional regulator  70.4 
 
 
252 aa  318  3.9999999999999996e-86  Beijerinckia indica subsp. indica ATCC 9039  Bacteria  normal  normal  0.427436 
 
 
-
 
NC_011666  Msil_0834  two component transcriptional regulator PhoB, winged helix family  70.54 
 
 
265 aa  315  3e-85  Methylocella silvestris BL2  Bacteria  n/a    normal  0.0108417 
 
 
-
 
NC_009719  Plav_0399  two component transcriptional regulator  63.27 
 
 
272 aa  293  2e-78  Parvibaculum lavamentivorans DS-1  Bacteria  normal  0.802217  normal 
 
 
-
 
NC_010338  Caul_4546  two component transcriptional regulator  65.04 
 
 
230 aa  290  1e-77  Caulobacter sp. K31  Bacteria  normal  normal  0.281853 
 
 
-
 
NC_008347  Mmar10_0483  two component transcriptional regulator  62.39 
 
 
229 aa  288  3e-77  Maricaulis maris MCS10  Bacteria  normal  0.342081  normal 
 
 
-
 
NC_009952  Dshi_1538  phosphate regulon transcriptional regulatory protein  62.78 
 
 
228 aa  276  1e-73  Dinoroseobacter shibae DFL 12  Bacteria  normal  normal  0.280381 
 
 
-
 
NC_007643  Rru_A0603  two component transcriptional regulator  59.91 
 
 
233 aa  275  3e-73  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  0.0519325  n/a   
 
 
-
 
NC_009049  Rsph17029_1257  two component transcriptional regulator  61.88 
 
 
230 aa  272  3e-72  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  0.621627  normal 
 
 
-
 
NC_007493  RSP_2599  phosphate regulon transcriptional regulator, PhoR  61.88 
 
 
230 aa  272  3e-72  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  n/a   
 
 
-
 
NC_009428  Rsph17025_1924  two component transcriptional regulator  61.88 
 
 
230 aa  271  7e-72  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  0.781724  normal  0.399122 
 
 
-
 
NC_008044  TM1040_1257  two component transcriptional regulator  58.74 
 
 
229 aa  263  2e-69  Ruegeria sp. TM1040  Bacteria  normal  0.536699  normal 
 
 
-
 
NC_007802  Jann_2294  two component transcriptional regulator  57.4 
 
 
228 aa  258  4e-68  Jannaschia sp. CCS1  Bacteria  normal  0.305192  normal 
 
 
-
 
NC_008687  Pden_4325  two component transcriptional regulator  60.54 
 
 
229 aa  253  1.0000000000000001e-66  Paracoccus denitrificans PD1222  Bacteria  normal  0.974523  normal 
 
 
-
 
NC_009511  Swit_3577  two component transcriptional regulator  57.14 
 
 
232 aa  253  2.0000000000000002e-66  Sphingomonas wittichii RW1  Bacteria  normal  normal  0.70324 
 
 
-
 
NC_009484  Acry_2951  two component transcriptional regulator  57.14 
 
 
236 aa  252  3e-66  Acidiphilium cryptum JF-5  Bacteria  normal  n/a   
 
 
-
 
NC_008048  Sala_0821  two component transcriptional regulator  53.78 
 
 
232 aa  249  2e-65  Sphingopyxis alaskensis RB2256  Bacteria  normal  0.60557  hitchhiker  0.00503775 
 
 
-
 
NC_007794  Saro_2281  two component transcriptional regulator  54.22 
 
 
229 aa  244  6.999999999999999e-64  Novosphingobium aromaticivorans DSM 12444  Bacteria  normal  0.331932  n/a   
 
 
-
 
NC_008825  Mpe_A1277  two component transcriptional regulator  54.02 
 
 
233 aa  242  3.9999999999999997e-63  Methylibium petroleiphilum PM1  Bacteria  normal  0.0649233  normal  0.253886 
 
 
-
 
NC_007947  Mfla_0489  two component transcriptional regulator  52.86 
 
 
228 aa  231  6e-60  Methylobacillus flagellatus KT  Bacteria  normal  normal 
 
 
-
 
NC_009092  Shew_2749  two component transcriptional regulator  51.54 
 
 
241 aa  230  1e-59  Shewanella loihica PV-4  Bacteria  decreased coverage  0.00000593879  unclonable  0.00000330773 
 
 
-
 
NC_008700  Sama_1074  response regulator receiver protein  51.1 
 
 
229 aa  229  2e-59  Shewanella amazonensis SB2B  Bacteria  hitchhiker  0.0000246777  normal  0.491091 
 
 
-
 
NC_008782  Ajs_2367  two component transcriptional regulator  49.12 
 
 
235 aa  229  4e-59  Acidovorax sp. JS42  Bacteria  normal  normal 
 
 
-
 
NC_007484  Noc_2401  phosphate regulon transcriptional regulatory protein phoB  49.34 
 
 
229 aa  228  4e-59  Nitrosococcus oceani ATCC 19707  Bacteria  normal  n/a   
 
 
-
 
NC_009831  Ssed_3303  two component transcriptional regulator  51.54 
 
 
229 aa  228  5e-59  Shewanella sediminis HAW-EB3  Bacteria  unclonable  0.0000000702519  hitchhiker  0.00000106408 
 
 
-
 
NC_012791  Vapar_2316  two component transcriptional regulator PhoB, winged helix family  49.33 
 
 
230 aa  228  7e-59  Variovorax paradoxus S110  Bacteria  normal  n/a   
 
 
-
 
NC_007614  Nmul_A2231  two component transcriptional regulator  51.1 
 
 
234 aa  228  7e-59  Nitrosospira multiformis ATCC 25196  Bacteria  normal  n/a   
 
 
-
 
NC_011365  Gdia_2688  two component transcriptional regulator PhoB, winged helix family  52.25 
 
 
243 aa  227  9e-59  Gluconacetobacter diazotrophicus PAl 5  Bacteria  normal  0.0901925  normal  0.494683 
 
 
-
 
NC_010506  Swoo_3452  two component transcriptional regulator  51.54 
 
 
229 aa  227  1e-58  Shewanella woodyi ATCC 51908  Bacteria  hitchhiker  0.00686704  hitchhiker  0.000158375 
 
 
-
 
NC_007404  Tbd_0216  two component transcriptional regulator  50.22 
 
 
230 aa  227  1e-58  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  normal  0.305183 
 
 
-
 
NC_008789  Hhal_0098  two component transcriptional regulator  51.57 
 
 
229 aa  227  1e-58  Halorhodospira halophila SL1  Bacteria  normal  0.761303  n/a   
 
 
-
 
NC_007954  Sden_2689  phosphate regulon transcriptional regulatory protein phoB  50.66 
 
 
229 aa  227  1e-58  Shewanella denitrificans OS217  Bacteria  hitchhiker  0.00000627834  n/a   
 
 
-
 
NC_013422  Hneap_2266  two component transcriptional regulator PhoB, winged helix family  52.02 
 
 
230 aa  227  1e-58  Halothiobacillus neapolitanus c2  Bacteria  normal  n/a   
 
 
-
 
NC_004347  SO_1558  phosphate regulon response regulator PhoB  50.66 
 
 
239 aa  226  2e-58  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_009052  Sbal_1378  two component transcriptional regulator  50.66 
 
 
229 aa  226  2e-58  Shewanella baltica OS155  Bacteria  hitchhiker  0.00000291119  n/a   
 
 
-
 
NC_009665  Shew185_1364  two component transcriptional regulator  50.66 
 
 
229 aa  226  2e-58  Shewanella baltica OS185  Bacteria  hitchhiker  0.0000657343  n/a   
 
 
-
 
NC_011992  Dtpsy_1491  two component transcriptional regulator PhoB, winged helix family  48.67 
 
 
235 aa  226  2e-58  Acidovorax ebreus TPSY  Bacteria  normal  n/a   
 
 
-
 
NC_007908  Rfer_0578  two component transcriptional regulator  50.22 
 
 
240 aa  226  2e-58  Rhodoferax ferrireducens T118  Bacteria  normal  n/a   
 
 
-
 
NC_011663  Sbal223_2981  two component transcriptional regulator PhoB, winged helix family  50.66 
 
 
229 aa  226  2e-58  Shewanella baltica OS223  Bacteria  hitchhiker  0.000000220801  hitchhiker  0.00121997 
 
 
-
 
NC_009997  Sbal195_1403  two component transcriptional regulator  50.66 
 
 
229 aa  226  2e-58  Shewanella baltica OS195  Bacteria  hitchhiker  0.00109837  normal  0.0219543 
 
 
-
 
NC_008752  Aave_2631  two component transcriptional regulator  49.12 
 
 
235 aa  226  2e-58  Acidovorax citrulli AAC00-1  Bacteria  normal  0.552533  normal  0.0653315 
 
 
-
 
NC_009438  Sputcn32_1296  two component transcriptional regulator  50.66 
 
 
229 aa  226  3e-58  Shewanella putrefaciens CN-32  Bacteria  unclonable  0.000000000460678  n/a   
 
 
-
 
NC_008321  Shewmr4_2709  two component transcriptional regulator  50.66 
 
 
229 aa  226  3e-58  Shewanella sp. MR-4  Bacteria  hitchhiker  0.00000407229  decreased coverage  0.000000263688 
 
 
-
 
NC_008322  Shewmr7_2777  two component transcriptional regulator  50.66 
 
 
229 aa  226  3e-58  Shewanella sp. MR-7  Bacteria  unclonable  0.000000628627  decreased coverage  0.000208697 
 
 
-
 
NC_008577  Shewana3_2879  two component transcriptional regulator  50.66 
 
 
229 aa  226  3e-58  Shewanella sp. ANA-3  Bacteria  hitchhiker  0.000000143261  hitchhiker  0.00000615281 
 
 
-
 
NC_008786  Veis_1288  two component transcriptional regulator  50.44 
 
 
238 aa  225  4e-58  Verminephrobacter eiseniae EF01-2  Bacteria  normal  normal 
 
 
-
 
NC_008345  Sfri_2768  two component transcriptional regulator, winged helix family protein  49.78 
 
 
229 aa  225  4e-58  Shewanella frigidimarina NCIMB 400  Bacteria  normal  0.0176064  n/a   
 
 
-
 
NC_007520  Tcr_0541  two component transcriptional regulator  51.82 
 
 
230 aa  225  5.0000000000000005e-58  Thiomicrospira crunogena XCL-2  Bacteria  normal  n/a   
 
 
-
 
NC_009379  Pnuc_1597  two component transcriptional regulator  49.12 
 
 
237 aa  224  8e-58  Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1  Bacteria  normal  n/a   
 
 
-
 
NC_010524  Lcho_1659  two component transcriptional regulator  53.15 
 
 
245 aa  224  9e-58  Leptothrix cholodnii SP-6  Bacteria  n/a    normal 
 
 
-
 
NC_010002  Daci_4913  two component transcriptional regulator  49.12 
 
 
231 aa  224  1e-57  Delftia acidovorans SPH-1  Bacteria  normal  normal  0.121364 
 
 
-
 
NC_010622  Bphy_0887  two component transcriptional regulator  51.09 
 
 
233 aa  224  1e-57  Burkholderia phymatum STM815  Bacteria  normal  0.686184  normal  0.0397846 
 
 
-
 
NC_010681  Bphyt_2853  two component transcriptional regulator, winged helix family  51.09 
 
 
233 aa  223  2e-57  Burkholderia phytofirmans PsJN  Bacteria  normal  normal 
 
 
-
 
NC_007951  Bxe_A1271  two component transcriptional regulator  51.09 
 
 
233 aa  223  2e-57  Burkholderia xenovorans LB400  Bacteria  normal  0.624894  normal  0.128476 
 
 
-
 
NC_007510  Bcep18194_A4448  two component transcriptional regulator  51.53 
 
 
233 aa  222  3e-57  Burkholderia sp. 383  Bacteria  normal  normal 
 
 
-
 
NC_011662  Tmz1t_0227  two component transcriptional regulator PhoB, winged helix family  52.91 
 
 
236 aa  222  4e-57  Thauera sp. MZ1T  Bacteria  normal  n/a   
 
 
-
 
NC_010551  BamMC406_1194  two component transcriptional regulator  51.53 
 
 
233 aa  221  6e-57  Burkholderia ambifaria MC40-6  Bacteria  normal  0.159741  normal  0.484581 
 
 
-
 
NC_009901  Spea_2969  two component transcriptional regulator  50.22 
 
 
229 aa  221  6e-57  Shewanella pealeana ATCC 700345  Bacteria  decreased coverage  0.000000855765  n/a   
 
 
-
 
NC_010508  Bcenmc03_1276  two component transcriptional regulator  51.53 
 
 
233 aa  221  6e-57  Burkholderia cenocepacia MC0-3  Bacteria  normal  normal 
 
 
-
 
NC_008060  Bcen_0824  two component transcriptional regulator  51.53 
 
 
233 aa  221  6e-57  Burkholderia cenocepacia AU 1054  Bacteria  normal  n/a   
 
 
-
 
NC_008390  Bamb_1182  two component transcriptional regulator  51.53 
 
 
233 aa  221  6e-57  Burkholderia ambifaria AMMD  Bacteria  normal  0.547738  n/a   
 
 
-
 
NC_008542  Bcen2424_1305  two component transcriptional regulator  51.53 
 
 
233 aa  221  6e-57  Burkholderia cenocepacia HI2424  Bacteria  normal  0.920206  n/a   
 
 
-
 
NC_011761  AFE_1434  DNA-binding response regulator PhoB  51.82 
 
 
243 aa  221  8e-57  Acidithiobacillus ferrooxidans ATCC 23270  Bacteria  normal  n/a   
 
 
-
 
NC_010084  Bmul_2015  two component transcriptional regulator  50.66 
 
 
233 aa  221  8e-57  Burkholderia multivorans ATCC 17616  Bacteria  normal  0.582968  normal 
 
 
-
 
NC_011206  Lferr_1151  two component transcriptional regulator, winged helix family  51.82 
 
 
243 aa  221  8e-57  Acidithiobacillus ferrooxidans ATCC 53993  Bacteria  normal  normal 
 
 
-
 
NC_009080  BMA10247_0579  phosphate regulon transcriptional regulatory protein PhoB  51.09 
 
 
233 aa  220  9.999999999999999e-57  Burkholderia mallei NCTC 10247  Bacteria  normal  0.0503015  n/a   
 
 
-
 
NC_008785  BMASAVP1_A1296  phosphate regulon transcriptional regulatory protein PhoB  51.09 
 
 
233 aa  220  9.999999999999999e-57  Burkholderia mallei SAVP1  Bacteria  normal  n/a   
 
 
-
 
NC_006348  BMA0785  DNA-binding response regulator PhoB  51.09 
 
 
233 aa  220  9.999999999999999e-57  Burkholderia mallei ATCC 23344  Bacteria  normal  n/a   
 
 
-
 
NC_007434  BURPS1710b_1623  phosphate regulon transcriptional regulatory protein PhoB  51.09 
 
 
233 aa  220  9.999999999999999e-57  Burkholderia pseudomallei 1710b  Bacteria  normal  n/a   
 
 
-
 
NC_007651  BTH_I2768  phosphate regulon transcriptional regulatory protein PhoB  51.09 
 
 
233 aa  220  9.999999999999999e-57  Burkholderia thailandensis E264  Bacteria  normal  0.368066  n/a   
 
 
-
 
NC_008781  Pnap_2201  two component transcriptional regulator  49.55 
 
 
242 aa  220  9.999999999999999e-57  Polaromonas naphthalenivorans CJ2  Bacteria  normal  0.153982  normal 
 
 
-
 
NC_009076  BURPS1106A_1520  phosphate regulon transcriptional regulatory protein PhoB  51.09 
 
 
233 aa  220  9.999999999999999e-57  Burkholderia pseudomallei 1106a  Bacteria  normal  n/a   
 
 
-
 
NC_008836  BMA10229_A0572  phosphate regulon transcriptional regulatory protein PhoB  51.09 
 
 
233 aa  220  9.999999999999999e-57  Burkholderia mallei NCTC 10229  Bacteria  normal  n/a   
 
 
-
 
NC_009074  BURPS668_1490  phosphate regulon transcriptional regulatory protein PhoB  51.09 
 
 
233 aa  220  9.999999999999999e-57  Burkholderia pseudomallei 668  Bacteria  normal  0.72233  n/a   
 
 
-
 
NC_011901  Tgr7_2472  response regulator receiver protein  54.11 
 
 
216 aa  220  1.9999999999999999e-56  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  n/a   
 
 
-
 
NC_011071  Smal_0824  two component transcriptional regulator, winged helix family  48.02 
 
 
229 aa  219  3e-56  Stenotrophomonas maltophilia R551-3  Bacteria  normal  normal 
 
 
-
 
NC_007948  Bpro_2257  two component transcriptional regulator  50 
 
 
243 aa  218  3.9999999999999997e-56  Polaromonas sp. JS666  Bacteria  normal  0.512842  normal  0.410356 
 
 
-
 
NC_008228  Patl_1053  two component transcriptional regulator  48.88 
 
 
229 aa  218  3.9999999999999997e-56  Pseudoalteromonas atlantica T6c  Bacteria  normal  n/a   
 
 
-
 
NC_009832  Spro_1041  two component transcriptional regulator  47.14 
 
 
229 aa  218  5e-56  Serratia proteamaculans 568  Bacteria  normal  normal  0.194422 
 
 
-
 
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