93 homologs were found in PanDaTox collection
for query gene Shewmr7_2157 on replicon NC_008322
Organism: Shewanella sp. MR-7



Page 1 of 1    << first  < prev  1  next >  last >>   


Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_008577  Shewana3_1878  Ni/Fe-hydrogenase, b-type cytochrome subunit  100 
 
 
224 aa  452  1.0000000000000001e-126  Shewanella sp. ANA-3  Bacteria  normal  normal 
 
 
-
 
NC_008322  Shewmr7_2157  Ni/Fe-hydrogenase, b-type cytochrome subunit  100 
 
 
224 aa  452  1.0000000000000001e-126  Shewanella sp. MR-7  Bacteria  normal  0.71471  normal  0.166064 
 
 
-
 
NC_008321  Shewmr4_1820  Ni/Fe-hydrogenase, b-type cytochrome subunit  99.55 
 
 
224 aa  451  1.0000000000000001e-126  Shewanella sp. MR-4  Bacteria  normal  normal 
 
 
-
 
NC_004347  SO_2097  quinone-reactive Ni/Fe hydrogenase, cytochrome b subunit  96.88 
 
 
224 aa  446  1.0000000000000001e-124  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_009997  Sbal195_1920  Ni/Fe-hydrogenase, b-type cytochrome subunit  95.98 
 
 
224 aa  439  9.999999999999999e-123  Shewanella baltica OS195  Bacteria  normal  normal 
 
 
-
 
NC_009052  Sbal_1887  Ni/Fe-hydrogenase, b-type cytochrome subunit  95.98 
 
 
224 aa  439  9.999999999999999e-123  Shewanella baltica OS155  Bacteria  normal  n/a   
 
 
-
 
NC_009665  Shew185_1913  Ni/Fe-hydrogenase, b-type cytochrome subunit  95.98 
 
 
224 aa  439  9.999999999999999e-123  Shewanella baltica OS185  Bacteria  normal  0.400664  n/a   
 
 
-
 
NC_011663  Sbal223_2406  Ni/Fe-hydrogenase, b-type cytochrome subunit  95.54 
 
 
224 aa  437  9.999999999999999e-123  Shewanella baltica OS223  Bacteria  normal  0.0991035  hitchhiker  0.000275557 
 
 
-
 
NC_009438  Sputcn32_2090  Ni/Fe-hydrogenase, b-type cytochrome subunit  94.2 
 
 
224 aa  435  1e-121  Shewanella putrefaciens CN-32  Bacteria  normal  0.427939  n/a   
 
 
-
 
NC_009831  Ssed_1906  Ni/Fe-hydrogenase, b-type cytochrome subunit  80 
 
 
221 aa  373  1e-102  Shewanella sediminis HAW-EB3  Bacteria  normal  normal  0.0142953 
 
 
-
 
NC_009901  Spea_2031  Ni/Fe-hydrogenase, b-type cytochrome subunit  79.55 
 
 
222 aa  356  9.999999999999999e-98  Shewanella pealeana ATCC 700345  Bacteria  normal  0.172243  n/a   
 
 
-
 
NC_008345  Sfri_2105  Ni/Fe-hydrogenase, b-type cytochrome subunit  81.28 
 
 
222 aa  355  1.9999999999999998e-97  Shewanella frigidimarina NCIMB 400  Bacteria  normal  n/a   
 
 
-
 
NC_009092  Shew_1763  Ni/Fe-hydrogenase, b-type cytochrome subunit  80 
 
 
223 aa  350  8e-96  Shewanella loihica PV-4  Bacteria  normal  normal 
 
 
-
 
NC_008700  Sama_1677  quinone-reactive Ni/Fe hydrogenase, cytochrome b subunit  75.58 
 
 
238 aa  328  3e-89  Shewanella amazonensis SB2B  Bacteria  normal  normal  0.623865 
 
 
-
 
NC_008599  CFF8240_0938  Ni/Fe-hydrogenase, B-type cytochrome subunit  43.81 
 
 
225 aa  199  3e-50  Campylobacter fetus subsp. fetus 82-40  Bacteria  normal  0.36095  n/a   
 
 
-
 
NC_009714  CHAB381_0863  Ni/Fe-hydrogenase, B-type cytochrome subunit  45.28 
 
 
221 aa  184  1.0000000000000001e-45  Campylobacter hominis ATCC BAA-381  Bacteria  normal  0.627078  n/a   
 
 
-
 
NC_012039  Cla_0714  Ni/Fe hydrogenase, cytochrome b subunit  44.13 
 
 
230 aa  182  5.0000000000000004e-45  Campylobacter lari RM2100  Bacteria  normal  0.72466  n/a   
 
 
-
 
NC_009715  CCV52592_1901  Ni/Fe-hydrogenase, B-type cytochrome subunit  44.25 
 
 
227 aa  180  1e-44  Campylobacter curvus 525.92  Bacteria  normal  n/a   
 
 
-
 
NC_008787  CJJ81176_1281  quinone-reactive Ni/Fe hydrogenase, cytochrome b subunit  41.99 
 
 
238 aa  180  2e-44  Campylobacter jejuni subsp. jejuni 81-176  Bacteria  hitchhiker  0.00387154  n/a   
 
 
-
 
NC_003912  CJE1401  quinone-reactive Ni/Fe hydrogenase, cytochrome b subunit  41.99 
 
 
238 aa  179  2e-44  Campylobacter jejuni RM1221  Bacteria  normal  n/a   
 
 
-
 
NC_009707  JJD26997_0460  quinone-reactive Ni/Fe hydrogenase, cytochrome b subunit  42.42 
 
 
238 aa  179  2.9999999999999997e-44  Campylobacter jejuni subsp. doylei 269.97  Bacteria  hitchhiker  0.00000119026  n/a   
 
 
-
 
NC_013512  Sdel_1104  Ni/Fe-hydrogenase, b-type cytochrome subunit  41.78 
 
 
225 aa  172  3.9999999999999995e-42  Sulfurospirillum deleyianum DSM 6946  Bacteria  normal  n/a   
 
 
-
 
NC_007575  Suden_1434  nickel-dependent hydrogenase b-type cytochrome subunit  34.88 
 
 
243 aa  146  2.0000000000000003e-34  Sulfurimonas denitrificans DSM 1251  Bacteria  normal  0.237376  n/a   
 
 
-
 
NC_011126  HY04AAS1_0052  Ni/Fe-hydrogenase, b-type cytochrome subunit  31.92 
 
 
231 aa  105  6e-22  Hydrogenobaculum sp. Y04AAS1  Bacteria  normal  0.036623  n/a   
 
 
-
 
NC_011830  Dhaf_2741  Ni/Fe-hydrogenase, b-type cytochrome subunit  30.65 
 
 
207 aa  96.7  3e-19  Desulfitobacterium hafniense DCB-2  Bacteria  hitchhiker  0.00000000157602  n/a   
 
 
-
 
NC_012560  Avin_50570  Ni/Fe-hydrogenase, b-type cytochrome subunit, HoxZ  31.51 
 
 
240 aa  94  2e-18  Azotobacter vinelandii DJ  Bacteria  hitchhiker  0.00896899  n/a   
 
 
-
 
NC_011830  Dhaf_3369  Ni/Fe-hydrogenase, b-type cytochrome subunit  28.32 
 
 
240 aa  93.2  3e-18  Desulfitobacterium hafniense DCB-2  Bacteria  hitchhiker  0.00901378  n/a   
 
 
-
 
NC_010627  Bphy_7263  Ni/Fe-hydrogenase, b-type cytochrome subunit  29.49 
 
 
236 aa  90.9  1e-17  Burkholderia phymatum STM815  Bacteria  normal  0.73881  normal  0.356245 
 
 
-
 
NC_002977  MCA0163  nickel-iron hydrogenase, small subunit  31.62 
 
 
228 aa  89.7  4e-17  Methylococcus capsulatus str. Bath  Bacteria  normal  0.979082  n/a   
 
 
-
 
NC_009429  Rsph17025_3373  Ni Fe-hydrogenase I large subunit-like protein  29.96 
 
 
263 aa  87.4  2e-16  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  0.262475  normal 
 
 
-
 
NC_008781  Pnap_1972  Ni/Fe-hydrogenase, b-type cytochrome subunit  29.25 
 
 
246 aa  86.7  3e-16  Polaromonas naphthalenivorans CJ2  Bacteria  normal  0.184335  normal 
 
 
-
 
NC_009484  Acry_0336  Ni/Fe-hydrogenase, b-type cytochrome subunit  29.91 
 
 
244 aa  85.1  8e-16  Acidiphilium cryptum JF-5  Bacteria  decreased coverage  0.00129504  n/a   
 
 
-
 
NC_009720  Xaut_2175  Ni/Fe-hydrogenase, b-type cytochrome subunit  27.68 
 
 
250 aa  84.3  0.000000000000001  Xanthobacter autotrophicus Py2  Bacteria  decreased coverage  0.000847396  normal  0.136379 
 
 
-
 
NC_009049  Rsph17029_2149  Ni/Fe-hydrogenase, b-type cytochrome subunit  28.44 
 
 
261 aa  84  0.000000000000002  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  0.0320701  normal  0.217874 
 
 
-
 
NC_007973  Rmet_1295  nickel-dependent hydrogenase b-type cytochrome subunit  26.24 
 
 
243 aa  82.8  0.000000000000004  Cupriavidus metallidurans CH34  Bacteria  hitchhiker  0.00118042  normal  0.526274 
 
 
-
 
NC_009485  BBta_1998  Ni/Fe-hydrogenase, 1 b-type cytochrome subunit  28.05 
 
 
247 aa  82.8  0.000000000000004  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.130131  normal 
 
 
-
 
NC_007493  RSP_0498  Ni, Fe hydrogenase I cytochrome b subunit  28.18 
 
 
215 aa  81.6  0.000000000000008  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  n/a   
 
 
-
 
NC_009441  Fjoh_3908  Ni/Fe-hydrogenase, b-type cytochrome subunit  24.66 
 
 
253 aa  81.6  0.000000000000009  Flavobacterium johnsoniae UW101  Bacteria  normal  n/a   
 
 
-
 
NC_008825  Mpe_A2824  HupC protein  26.7 
 
 
244 aa  80.5  0.00000000000002  Methylibium petroleiphilum PM1  Bacteria  normal  0.603712  normal 
 
 
-
 
NC_008340  Mlg_2027  Ni/Fe-hydrogenase, b-type cytochrome subunit  27.85 
 
 
240 aa  80.5  0.00000000000002  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  normal 
 
 
-
 
NC_007958  RPD_1164  nickel-dependent hydrogenase b-type cytochrome subunit  28.33 
 
 
242 aa  80.5  0.00000000000002  Rhodopseudomonas palustris BisB5  Bacteria  normal  0.210413  normal 
 
 
-
 
NC_007298  Daro_3987  nickel-dependent hydrogenase b-type cytochrome subunit  24.77 
 
 
234 aa  79  0.00000000000005  Dechloromonas aromatica RCB  Bacteria  normal  normal 
 
 
-
 
NC_013204  Elen_1277  cytochrome B561  30.41 
 
 
232 aa  78.6  0.00000000000008  Eggerthella lenta DSM 2243  Bacteria  normal  0.258136  normal 
 
 
-
 
NC_008687  Pden_3100  Ni/Fe-hydrogenase, b-type cytochrome subunit  26.43 
 
 
248 aa  78.2  0.0000000000001  Paracoccus denitrificans PD1222  Bacteria  normal  normal 
 
 
-
 
NC_007925  RPC_3770  nickel-dependent hydrogenase b-type cytochrome subunit  27.31 
 
 
244 aa  77.8  0.0000000000001  Rhodopseudomonas palustris BisB18  Bacteria  normal  0.52768  normal 
 
 
-
 
NC_007512  Plut_1448  nickel-dependent hydrogenase b-type cytochrome subunit  28.44 
 
 
227 aa  77.8  0.0000000000001  Chlorobium luteolum DSM 273  Bacteria  normal  0.0615119  normal 
 
 
-
 
NC_010831  Cphamn1_1591  Ni/Fe-hydrogenase, b-type cytochrome subunit  26.7 
 
 
229 aa  75.9  0.0000000000005  Chlorobium phaeobacteroides BS1  Bacteria  normal  normal 
 
 
-
 
NC_013170  Ccur_08530  Ni,Fe-hydrogenase I cytochrome b subunit  29.08 
 
 
229 aa  75.5  0.0000000000006  Cryptobacterium curtum DSM 15641  Bacteria  normal  normal  0.360929 
 
 
-
 
NC_008639  Cpha266_0974  Ni/Fe-hydrogenase, b-type cytochrome subunit  27.31 
 
 
227 aa  73.9  0.000000000002  Chlorobium phaeobacteroides DSM 266  Bacteria  decreased coverage  0.0000584739  n/a   
 
 
-
 
NC_011059  Paes_0855  Ni/Fe-hydrogenase, b-type cytochrome subunit  27.6 
 
 
229 aa  73.6  0.000000000002  Prosthecochloris aestuarii DSM 271  Bacteria  normal  normal  0.34705 
 
 
-
 
NC_009483  Gura_0874  Ni/Fe-hydrogenase, b-type cytochrome subunit  27.06 
 
 
222 aa  73.6  0.000000000003  Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
NC_010803  Clim_0857  Ni/Fe-hydrogenase, b-type cytochrome subunit  26.85 
 
 
227 aa  71.6  0.000000000008  Chlorobium limicola DSM 245  Bacteria  normal  n/a   
 
 
-
 
NC_007643  Rru_A1163  nickel-dependent hydrogenase b-type cytochrome subunit  27.4 
 
 
239 aa  70.5  0.00000000002  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  n/a   
 
 
-
 
NC_011060  Ppha_1860  Ni/Fe-hydrogenase, b-type cytochrome subunit  25.71 
 
 
227 aa  70.5  0.00000000002  Pelodictyon phaeoclathratiforme BU-1  Bacteria  normal  n/a   
 
 
-
 
NC_011353  ECH74115_1210  hydrogenase 1 b-type cytochrome subunit  25.45 
 
 
235 aa  69.3  0.00000000004  Escherichia coli O157:H7 str. EC4115  Bacteria  normal  normal 
 
 
-
 
NC_012892  B21_00984  hypothetical protein  25.45 
 
 
235 aa  69.3  0.00000000004  Escherichia coli BL21  Bacteria  normal  0.143558  n/a   
 
 
-
 
NC_009800  EcHS_A1082  hydrogenase 1 b-type cytochrome subunit  25.45 
 
 
235 aa  69.3  0.00000000004  Escherichia coli HS  Bacteria  normal  n/a   
 
 
-
 
NC_010658  SbBS512_E2341  hydrogenase 1 b-type cytochrome subunit  25.45 
 
 
235 aa  69.7  0.00000000004  Shigella boydii CDC 3083-94  Bacteria  normal  0.334235  n/a   
 
 
-
 
CP001637  EcDH1_2670  Ni/Fe-hydrogenase, b-type cytochrome subunit  25.45 
 
 
235 aa  69.3  0.00000000004  Escherichia coli DH1  Bacteria  normal  0.0583865  n/a   
 
 
-
 
NC_010468  EcolC_2622  hydrogenase 1 b-type cytochrome subunit  25.45 
 
 
235 aa  69.3  0.00000000004  Escherichia coli ATCC 8739  Bacteria  normal  0.954449  hitchhiker  0.00890552 
 
 
-
 
CP001509  ECD_00977  hydrogenase 1, b-type cytochrome subunit  25.45 
 
 
235 aa  69.3  0.00000000004  Escherichia coli BL21(DE3)  Bacteria  normal  0.112521  n/a   
 
 
-
 
NC_009801  EcE24377A_1089  hydrogenase 1 b-type cytochrome subunit  25.45 
 
 
235 aa  69.3  0.00000000004  Escherichia coli E24377A  Bacteria  normal  0.0131135  n/a   
 
 
-
 
NC_010498  EcSMS35_2143  hydrogenase 1 b-type cytochrome subunit  25 
 
 
235 aa  68.9  0.00000000005  Escherichia coli SMS-3-5  Bacteria  normal  0.187945  normal  0.482264 
 
 
-
 
NC_011004  Rpal_1156  Ni/Fe-hydrogenase, b-type cytochrome subunit  25.96 
 
 
242 aa  68.9  0.00000000006  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.190258  n/a   
 
 
-
 
NC_011083  SeHA_C1708  Ni/Fe-hydrogenase, B-type cytochrome subunit  23.72 
 
 
247 aa  68.9  0.00000000006  Salmonella enterica subsp. enterica serovar Heidelberg str. SL476  Bacteria  normal  0.33968  normal 
 
 
-
 
NC_011080  SNSL254_A1649  Ni/Fe-hydrogenase, B-type cytochrome subunit  23.72 
 
 
247 aa  68.6  0.00000000008  Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  normal  normal 
 
 
-
 
NC_011205  SeD_A1799  Ni/Fe-hydrogenase, B-type cytochrome subunit  23.72 
 
 
247 aa  68.6  0.00000000008  Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853  Bacteria  normal  0.384885  normal 
 
 
-
 
NC_011149  SeAg_B1634  Ni/Fe-hydrogenase, B-type cytochrome subunit  23.72 
 
 
247 aa  68.6  0.00000000008  Salmonella enterica subsp. enterica serovar Agona str. SL483  Bacteria  normal  n/a   
 
 
-
 
NC_011094  SeSA_A1641  Ni/Fe-hydrogenase, B-type cytochrome subunit  23.72 
 
 
224 aa  68.2  0.00000000009  Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633  Bacteria  normal  normal 
 
 
-
 
NC_010581  Bind_1152  Ni/Fe-hydrogenase, b-type cytochrome subunit  25.22 
 
 
254 aa  67.8  0.0000000001  Beijerinckia indica subsp. indica ATCC 9039  Bacteria  normal  0.955059  normal 
 
 
-
 
NC_002939  GSU0121  nickel-iron hydrogenase, b-type cytochrome subunit  26.19 
 
 
222 aa  65.5  0.0000000006  Geobacter sulfurreducens PCA  Bacteria  normal  0.347229  n/a   
 
 
-
 
NC_010655  Amuc_2130  cytochrome B561  27.52 
 
 
390 aa  65.1  0.0000000008  Akkermansia muciniphila ATCC BAA-835  Bacteria  normal  0.578698  normal  0.698297 
 
 
-
 
NC_010814  Glov_2054  Ni/Fe-hydrogenase, b-type cytochrome subunit  24.31 
 
 
236 aa  63.9  0.000000002  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
NC_011883  Ddes_0835  Ni/Fe-hydrogenase, b-type cytochrome subunit  29.77 
 
 
234 aa  63.9  0.000000002  Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774  Bacteria  normal  n/a   
 
 
-
 
NC_011149  SeAg_B1346  hydrogenase 1 b-type cytochrome subunit  21.4 
 
 
243 aa  62  0.000000007  Salmonella enterica subsp. enterica serovar Agona str. SL483  Bacteria  normal  n/a   
 
 
-
 
NC_011083  SeHA_C1986  hydrogenase 1 b-type cytochrome subunit  21.4 
 
 
243 aa  62  0.000000007  Salmonella enterica subsp. enterica serovar Heidelberg str. SL476  Bacteria  normal  normal 
 
 
-
 
NC_011146  Gbem_1367  cytochrome B561  25.12 
 
 
390 aa  61.2  0.00000001  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_011205  SeD_A1530  hydrogenase 1 b-type cytochrome subunit  20.96 
 
 
243 aa  61.2  0.00000001  Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853  Bacteria  normal  0.927879  normal  0.28016 
 
 
-
 
NC_009483  Gura_0543  Ni/Fe-hydrogenase, b-type cytochrome subunit  23.36 
 
 
218 aa  60.5  0.00000002  Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
NC_011080  SNSL254_A1926  hydrogenase 1 b-type cytochrome subunit  20.96 
 
 
243 aa  60.8  0.00000002  Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  normal  0.953972  normal 
 
 
-
 
NC_007517  Gmet_3330  nickel-dependent hydrogenase b-type cytochrome subunit  25.85 
 
 
222 aa  60.5  0.00000002  Geobacter metallireducens GS-15  Bacteria  normal  normal 
 
 
-
 
NC_011094  SeSA_A1930  hydrogenase 1 b-type cytochrome subunit  20.96 
 
 
243 aa  60.8  0.00000002  Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633  Bacteria  normal  normal 
 
 
-
 
NC_012918  GM21_2916  cytochrome B561  25 
 
 
390 aa  59.3  0.00000005  Geobacter sp. M21  Bacteria  n/a    normal  0.494489 
 
 
-
 
NC_009767  Rcas_3146  Ni/Fe-hydrogenase, b-type cytochrome subunit  24 
 
 
258 aa  57.8  0.0000001  Roseiflexus castenholzii DSM 13941  Bacteria  normal  0.0114554  normal 
 
 
-
 
NC_009523  RoseRS_2321  Ni/Fe-hydrogenase, b-type cytochrome subunit  23.11 
 
 
258 aa  54.3  0.000002  Roseiflexus sp. RS-1  Bacteria  normal  normal 
 
 
-
 
NC_009921  Franean1_3405  Ni/Fe-hydrogenase, b-type cytochrome subunit  25.76 
 
 
228 aa  47.8  0.0001  Frankia sp. EAN1pec  Bacteria  normal  0.788903  normal 
 
 
-
 
NC_011365  Gdia_1696  hypothetical protein  28.5 
 
 
217 aa  47.8  0.0001  Gluconacetobacter diazotrophicus PAl 5  Bacteria  normal  normal 
 
 
-
 
NC_011146  Gbem_0677  cytochrome B561  23.58 
 
 
244 aa  46.2  0.0004  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_008609  Ppro_1576  cytochrome b561  23.76 
 
 
221 aa  46.2  0.0004  Pelobacter propionicus DSM 2379  Bacteria  normal  n/a   
 
 
-
 
NC_012918  GM21_0690  cytochrome B561  23.58 
 
 
244 aa  45.4  0.0007  Geobacter sp. M21  Bacteria  n/a    hitchhiker  0.000000000204207 
 
 
-
 
NC_011368  Rleg2_4815  cytochrome B561  31.63 
 
 
280 aa  43.9  0.002  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal 
 
 
-
 
NC_007925  RPC_0243  hypothetical protein  25.12 
 
 
209 aa  42  0.008  Rhodopseudomonas palustris BisB18  Bacteria  normal  0.396094  normal  0.061558 
 
 
-
 
NC_012850  Rleg_2569  cytochrome B561  31.63 
 
 
280 aa  41.6  0.01  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.101312  normal 
 
 
-
 
Page 1 of 1    << first  < prev  1  next >  last >>