18 homologs were found in PanDaTox collection
for query gene Shewana3_4246 on replicon NC_008573
Organism: Shewanella sp. ANA-3



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_008573  Shewana3_4246  XRE family transcriptional regulator  100 
 
 
162 aa  323  6e-88  Shewanella sp. ANA-3  Bacteria  normal  decreased coverage  0.000130634 
 
 
-
 
NC_009052  Sbal_1582  mobile mystery protein A  43.24 
 
 
170 aa  137  4.999999999999999e-32  Shewanella baltica OS155  Bacteria  normal  n/a   
 
 
-
 
NC_002939  GSU1390  DNA-binding protein  40 
 
 
156 aa  116  1.9999999999999998e-25  Geobacter sulfurreducens PCA  Bacteria  normal  n/a   
 
 
-
 
NC_010814  Glov_2564  transcriptional regulator, XRE family  42.06 
 
 
153 aa  106  1e-22  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
NC_010814  Glov_3533  transcriptional regulator, XRE family  40.48 
 
 
176 aa  103  8e-22  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
NC_011901  Tgr7_3298  DNA-binding protein  40.77 
 
 
156 aa  101  4e-21  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  0.441123  n/a   
 
 
-
 
NC_010803  Clim_2243  mobile mystery protein A  41.54 
 
 
152 aa  99.4  2e-20  Chlorobium limicola DSM 245  Bacteria  normal  n/a   
 
 
-
 
NC_010831  Cphamn1_0742  transcriptional regulator, XRE family  36.92 
 
 
152 aa  95.9  2e-19  Chlorobium phaeobacteroides BS1  Bacteria  normal  0.149727  normal  0.0714352 
 
 
-
 
NC_007512  Plut_1905  XRE family transcriptional regulator  36.36 
 
 
152 aa  95.5  3e-19  Chlorobium luteolum DSM 273  Bacteria  normal  normal  0.561511 
 
 
-
 
NC_008786  Veis_0005  mobile mystery protein A  36.11 
 
 
171 aa  94  8e-19  Verminephrobacter eiseniae EF01-2  Bacteria  normal  normal 
 
 
-
 
NC_009717  Xaut_4942  mobile mystery protein A  34.01 
 
 
170 aa  89  3e-17  Xanthobacter autotrophicus Py2  Bacteria  normal  normal 
 
 
-
 
NC_010333  Caul_5363  mobile mystery protein A  34.29 
 
 
154 aa  85.5  3e-16  Caulobacter sp. K31  Bacteria  normal  normal  0.084336 
 
 
-
 
NC_009726  CBUD_A0001  helix-turn-helix domain containing protein  31.03 
 
 
152 aa  85.1  4e-16  Coxiella burnetii Dugway 5J108-111  Bacteria  normal  0.998773  n/a   
 
 
-
 
NC_010115  COXBURSA331_0039  mobile mystery protein A  30.14 
 
 
152 aa  84.3  7e-16  Coxiella burnetii RSA 331  Bacteria  normal  n/a   
 
 
-
 
NC_010002  Daci_1697  helix-turn-helix domain-containing protein  34.35 
 
 
146 aa  73.9  0.0000000000009  Delftia acidovorans SPH-1  Bacteria  normal  normal 
 
 
-
 
NC_009943  Dole_0170  DNA-binding protein  33.33 
 
 
108 aa  62  0.000000003  Desulfococcus oleovorans Hxd3  Bacteria  normal  n/a   
 
 
-
 
NC_010002  Daci_2577  XRE family transcriptional regulator  40 
 
 
135 aa  42.4  0.003  Delftia acidovorans SPH-1  Bacteria  normal  0.0918178  hitchhiker  0.000133769 
 
 
-
 
NC_010002  Daci_2611  XRE family transcriptional regulator  40 
 
 
135 aa  42.4  0.003  Delftia acidovorans SPH-1  Bacteria  normal  0.0796411  hitchhiker  0.0000000000000114 
 
 
-
 
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