More than 300 homologs were found in PanDaTox collection
for query gene Shew185_1827 on replicon NC_009665
Organism: Shewanella baltica OS185



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_009665  Shew185_1827  two component transcriptional regulator  100 
 
 
230 aa  480  1e-134  Shewanella baltica OS185  Bacteria  normal  0.0283431  n/a   
 
 
-
 
NC_009997  Sbal195_1875  two component transcriptional regulator  100 
 
 
230 aa  480  1e-134  Shewanella baltica OS195  Bacteria  decreased coverage  0.00450797  normal 
 
 
-
 
NC_011663  Sbal223_2450  two component transcriptional regulator, winged helix family  100 
 
 
230 aa  480  1e-134  Shewanella baltica OS223  Bacteria  decreased coverage  0.000016563  normal 
 
 
-
 
NC_009438  Sputcn32_1738  two component transcriptional regulator  98.26 
 
 
230 aa  472  1e-132  Shewanella putrefaciens CN-32  Bacteria  normal  0.485524  n/a   
 
 
-
 
NC_004347  SO_2193  DNA-binding response regulator  97.39 
 
 
230 aa  469  1.0000000000000001e-131  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_008321  Shewmr4_2202  two component transcriptional regulator  96.96 
 
 
230 aa  468  1.0000000000000001e-131  Shewanella sp. MR-4  Bacteria  normal  0.0636153  normal 
 
 
-
 
NC_008322  Shewmr7_2279  two component transcriptional regulator  96.96 
 
 
230 aa  468  1.0000000000000001e-131  Shewanella sp. MR-7  Bacteria  hitchhiker  0.00696203  normal 
 
 
-
 
NC_008577  Shewana3_2412  two component transcriptional regulator  97.39 
 
 
230 aa  469  1.0000000000000001e-131  Shewanella sp. ANA-3  Bacteria  decreased coverage  0.0000515704  normal 
 
 
-
 
NC_009052  Sbal_1840  two component transcriptional regulator  100 
 
 
227 aa  437  9.999999999999999e-123  Shewanella baltica OS155  Bacteria  normal  n/a   
 
 
-
 
NC_010506  Swoo_2122  two component transcriptional regulator  85.46 
 
 
231 aa  409  1e-113  Shewanella woodyi ATCC 51908  Bacteria  decreased coverage  0.00660884  normal  0.0855219 
 
 
-
 
NC_008345  Sfri_1623  two component transcriptional regulator, winged helix family protein  84.28 
 
 
229 aa  409  1e-113  Shewanella frigidimarina NCIMB 400  Bacteria  normal  0.314496  n/a   
 
 
-
 
NC_009831  Ssed_2494  two component transcriptional regulator  83.26 
 
 
232 aa  399  9.999999999999999e-111  Shewanella sediminis HAW-EB3  Bacteria  decreased coverage  0.00298377  normal  0.523068 
 
 
-
 
NC_008700  Sama_2005  response regulator receiver protein  84.21 
 
 
231 aa  399  9.999999999999999e-111  Shewanella amazonensis SB2B  Bacteria  normal  0.243352  normal  0.209106 
 
 
-
 
NC_009092  Shew_1791  two component transcriptional regulator  82.89 
 
 
230 aa  399  9.999999999999999e-111  Shewanella loihica PV-4  Bacteria  decreased coverage  0.0000231936  normal 
 
 
-
 
NC_009901  Spea_2518  two component transcriptional regulator  83.33 
 
 
230 aa  396  1e-109  Shewanella pealeana ATCC 700345  Bacteria  normal  0.0122186  n/a   
 
 
-
 
NC_003910  CPS_3982  DNA-binding response regulator  67.11 
 
 
238 aa  331  6e-90  Colwellia psychrerythraea 34H  Bacteria  normal  0.319576  n/a   
 
 
-
 
NC_011138  MADE_03557  two component transcriptional regulator, winged helix family  64 
 
 
229 aa  310  1e-83  Alteromonas macleodii 'Deep ecotype'  Bacteria  decreased coverage  0.000983286  n/a   
 
 
-
 
NC_008228  Patl_3920  two component transcriptional regulator  62.56 
 
 
237 aa  308  4e-83  Pseudoalteromonas atlantica T6c  Bacteria  normal  n/a   
 
 
-
 
NC_008740  Maqu_3685  two component transcriptional regulator  57.46 
 
 
233 aa  287  1e-76  Marinobacter aquaeolei VT8  Bacteria  normal  0.934173  n/a   
 
 
-
 
NC_007912  Sde_1016  response regulator receiver domain-containing protein  57.78 
 
 
230 aa  280  1e-74  Saccharophagus degradans 2-40  Bacteria  normal  normal 
 
 
-
 
NC_009049  Rsph17029_0314  two component transcriptional regulator  44.68 
 
 
233 aa  194  1e-48  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  normal  0.765921 
 
 
-
 
NC_007493  RSP_1681  two-component transcriptional regulator  44.44 
 
 
233 aa  191  1e-47  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  n/a   
 
 
-
 
NC_009484  Acry_1884  two component transcriptional regulator  45.85 
 
 
233 aa  189  2e-47  Acidiphilium cryptum JF-5  Bacteria  normal  n/a   
 
 
-
 
NC_008044  TM1040_2441  two component transcriptional regulator  42.98 
 
 
233 aa  184  1.0000000000000001e-45  Ruegeria sp. TM1040  Bacteria  normal  0.325552  normal 
 
 
-
 
NC_008347  Mmar10_0074  two component transcriptional regulator  44.49 
 
 
236 aa  183  2.0000000000000003e-45  Maricaulis maris MCS10  Bacteria  normal  normal 
 
 
-
 
NC_007802  Jann_0536  two component transcriptional regulator  42.31 
 
 
233 aa  182  3e-45  Jannaschia sp. CCS1  Bacteria  normal  normal 
 
 
-
 
NC_011004  Rpal_0361  two component transcriptional regulator, winged helix family  42.44 
 
 
233 aa  180  2e-44  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.324623  n/a   
 
 
-
 
NC_008254  Meso_3571  two component transcriptional regulator  42.92 
 
 
233 aa  179  2.9999999999999997e-44  Chelativorans sp. BNC1  Bacteria  normal  n/a   
 
 
-
 
NC_009952  Dshi_0212  two component transcriptional regulator  41.28 
 
 
233 aa  178  8e-44  Dinoroseobacter shibae DFL 12  Bacteria  normal  normal 
 
 
-
 
NC_011666  Msil_0255  two component transcriptional regulator, winged helix family  42.24 
 
 
231 aa  176  2e-43  Methylocella silvestris BL2  Bacteria  n/a    normal  0.02112 
 
 
-
 
NC_009720  Xaut_2845  two component transcriptional regulator  41.2 
 
 
232 aa  174  9.999999999999999e-43  Xanthobacter autotrophicus Py2  Bacteria  normal  normal  0.868207 
 
 
-
 
NC_009485  BBta_7367  two component transcriptional regulator  41.7 
 
 
233 aa  174  9.999999999999999e-43  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal 
 
 
-
 
NC_009511  Swit_0402  two component transcriptional regulator  42.24 
 
 
235 aa  173  1.9999999999999998e-42  Sphingomonas wittichii RW1  Bacteria  normal  0.344138  normal  0.0526207 
 
 
-
 
NC_009667  Oant_0828  two component transcriptional regulator  42.61 
 
 
239 aa  173  1.9999999999999998e-42  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  0.0815733  n/a   
 
 
-
 
NC_007778  RPB_0463  two component transcriptional regulator  41.7 
 
 
233 aa  173  1.9999999999999998e-42  Rhodopseudomonas palustris HaA2  Bacteria  normal  0.966783  normal  0.711351 
 
 
-
 
NC_007958  RPD_0367  winged helix family two component transcriptional regulator  41.7 
 
 
233 aa  173  1.9999999999999998e-42  Rhodopseudomonas palustris BisB5  Bacteria  normal  normal  0.0127671 
 
 
-
 
NC_011365  Gdia_1975  two component transcriptional regulator, winged helix family  44.1 
 
 
236 aa  173  1.9999999999999998e-42  Gluconacetobacter diazotrophicus PAl 5  Bacteria  normal  0.206633  normal 
 
 
-
 
NC_009719  Plav_0111  two component transcriptional regulator  41.2 
 
 
233 aa  172  2.9999999999999996e-42  Parvibaculum lavamentivorans DS-1  Bacteria  normal  normal  0.953605 
 
 
-
 
NC_007964  Nham_0443  two component transcriptional regulator  41.28 
 
 
233 aa  172  2.9999999999999996e-42  Nitrobacter hamburgensis X14  Bacteria  normal  n/a   
 
 
-
 
NC_004310  BR2090  DNA-binding response regulator BvrR, putative  42.17 
 
 
239 aa  172  3.9999999999999995e-42  Brucella suis 1330  Bacteria  normal  0.0306093  n/a   
 
 
-
 
NC_007406  Nwi_0348  transcriptional regulatory protein  41.28 
 
 
233 aa  172  3.9999999999999995e-42  Nitrobacter winogradskyi Nb-255  Bacteria  normal  0.618403  normal  0.242627 
 
 
-
 
NC_009505  BOV_2010  putative DNA-binding response regulator BvrR  42.17 
 
 
239 aa  172  3.9999999999999995e-42  Brucella ovis ATCC 25840  Bacteria  normal  0.112651  n/a   
 
 
-
 
NC_010581  Bind_2741  two component transcriptional regulator  41.81 
 
 
231 aa  172  5e-42  Beijerinckia indica subsp. indica ATCC 9039  Bacteria  normal  normal  0.299643 
 
 
-
 
NC_011989  Avi_0044  two component response regulator  40.82 
 
 
240 aa  172  5e-42  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_010338  Caul_4630  two component transcriptional regulator  37.87 
 
 
235 aa  171  6.999999999999999e-42  Caulobacter sp. K31  Bacteria  normal  0.0961185  normal 
 
 
-
 
NC_007643  Rru_A3422  two component transcriptional regulator  41.3 
 
 
241 aa  170  2e-41  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  n/a   
 
 
-
 
NC_007925  RPC_0597  two component transcriptional regulator  40.85 
 
 
233 aa  170  2e-41  Rhodopseudomonas palustris BisB18  Bacteria  normal  normal 
 
 
-
 
NC_010505  Mrad2831_3089  two component transcriptional regulator  41.95 
 
 
236 aa  168  5e-41  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal  0.63756 
 
 
-
 
NC_007794  Saro_2907  two component transcriptional regulator  40.85 
 
 
250 aa  167  1e-40  Novosphingobium aromaticivorans DSM 12444  Bacteria  normal  n/a   
 
 
-
 
NC_010725  Mpop_1179  two component transcriptional regulator, winged helix family  41.77 
 
 
237 aa  167  2e-40  Methylobacterium populi BJ001  Bacteria  normal  0.566879  normal  0.163877 
 
 
-
 
NC_010172  Mext_1238  response regulator receiver  41.77 
 
 
237 aa  167  2e-40  Methylobacterium extorquens PA1  Bacteria  normal  normal 
 
 
-
 
NC_011757  Mchl_1400  two component transcriptional regulator, winged helix family  41.77 
 
 
237 aa  167  2e-40  Methylobacterium chloromethanicum CM4  Bacteria  normal  0.0577794  normal  0.435154 
 
 
-
 
NC_011894  Mnod_5433  two component transcriptional regulator, winged helix family  40.76 
 
 
238 aa  165  5e-40  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.177781  n/a   
 
 
-
 
NC_010511  M446_0225  two component transcriptional regulator  40.76 
 
 
238 aa  165  5e-40  Methylobacterium sp. 4-46  Bacteria  normal  normal  0.0106464 
 
 
-
 
NC_008048  Sala_2047  two component transcriptional regulator  39.83 
 
 
236 aa  164  8e-40  Sphingopyxis alaskensis RB2256  Bacteria  normal  0.50343  normal  0.117999 
 
 
-
 
NC_009636  Smed_3252  two component transcriptional regulator  40.17 
 
 
240 aa  161  1e-38  Sinorhizobium medicae WSM419  Bacteria  normal  normal 
 
 
-
 
NC_012850  Rleg_4296  two component transcriptional regulator, winged helix family  40.33 
 
 
250 aa  160  2e-38  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal 
 
 
-
 
NC_011369  Rleg2_3969  two component transcriptional regulator, winged helix family  39.92 
 
 
244 aa  159  3e-38  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.966692  normal 
 
 
-
 
NC_007520  Tcr_1203  two component transcriptional regulator  38.84 
 
 
233 aa  159  5e-38  Thiomicrospira crunogena XCL-2  Bacteria  normal  0.856614  n/a   
 
 
-
 
NC_008783  BARBAKC583_1332  transcriptional regulatory protein BvrR  37.39 
 
 
240 aa  152  4e-36  Bartonella bacilliformis KC583  Bacteria  normal  n/a   
 
 
-
 
NC_007492  Pfl01_2892  two component transcriptional regulator  37.44 
 
 
233 aa  135  4e-31  Pseudomonas fluorescens Pf0-1  Bacteria  normal  0.440569  normal  0.202196 
 
 
-
 
NC_013501  Rmar_0987  two component transcriptional regulator, winged helix family  38.1 
 
 
233 aa  135  4e-31  Rhodothermus marinus DSM 4252  Bacteria  normal  0.195539  n/a   
 
 
-
 
NC_013739  Cwoe_5456  two component transcriptional regulator, winged helix family  35.53 
 
 
251 aa  135  5e-31  Conexibacter woesei DSM 14684  Bacteria  normal  0.228477  normal 
 
 
-
 
NC_014248  Aazo_2678  winged helix family two component transcriptional regulator  34.21 
 
 
240 aa  134  1.9999999999999998e-30  'Nostoc azollae' 0708  Bacteria  normal  n/a   
 
 
-
 
NC_009012  Cthe_1408  two component transcriptional regulator  37 
 
 
232 aa  134  1.9999999999999998e-30  Clostridium thermocellum ATCC 27405  Bacteria  normal  n/a   
 
 
-
 
NC_011899  Hore_04710  two component transcriptional regulator, winged helix family  36.05 
 
 
237 aa  133  1.9999999999999998e-30  Halothermothrix orenii H 168  Bacteria  normal  n/a   
 
 
-
 
NC_007644  Moth_0070  two component transcriptional regulator  37.12 
 
 
229 aa  132  3e-30  Moorella thermoacetica ATCC 39073  Bacteria  normal  normal  0.834843 
 
 
-
 
NC_011831  Cagg_0393  two component transcriptional regulator, winged helix family  36.52 
 
 
227 aa  132  3e-30  Chloroflexus aggregans DSM 9485  Bacteria  normal  normal  0.202895 
 
 
-
 
NC_011899  Hore_13280  two component transcriptional regulator, winged helix family  38.1 
 
 
227 aa  132  3.9999999999999996e-30  Halothermothrix orenii H 168  Bacteria  hitchhiker  0.0000000536961  n/a   
 
 
-
 
NC_007498  Pcar_0360  two component signal transduction response regulator  35.22 
 
 
224 aa  131  6.999999999999999e-30  Pelobacter carbinolicus DSM 2380  Bacteria  normal  n/a   
 
 
-
 
NC_011353  ECH74115_5913  DNA-binding response regulator CreB  34.06 
 
 
229 aa  131  7.999999999999999e-30  Escherichia coli O157:H7 str. EC4115  Bacteria  normal  normal 
 
 
-
 
NC_011368  Rleg2_4585  two component transcriptional regulator, winged helix family  36.68 
 
 
234 aa  130  1.0000000000000001e-29  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.209184  normal 
 
 
-
 
CP001509  ECD_04274  DNA-binding response regulator in two-component regulatory system with CreC  34.07 
 
 
229 aa  130  1.0000000000000001e-29  Escherichia coli BL21(DE3)  Bacteria  normal  n/a   
 
 
-
 
NC_012892  B21_04239  hypothetical protein  34.07 
 
 
229 aa  130  1.0000000000000001e-29  Escherichia coli BL21  Bacteria  normal  n/a   
 
 
-
 
CP001637  EcDH1_3599  two component transcriptional regulator, winged helix family  33.63 
 
 
229 aa  130  1.0000000000000001e-29  Escherichia coli DH1  Bacteria  normal  n/a   
 
 
-
 
NC_009832  Spro_1041  two component transcriptional regulator  34.78 
 
 
229 aa  131  1.0000000000000001e-29  Serratia proteamaculans 568  Bacteria  normal  normal  0.194422 
 
 
-
 
NC_007406  Nwi_0511  phosphate regulon transcriptional regulatory protein phoB  37.23 
 
 
234 aa  131  1.0000000000000001e-29  Nitrobacter winogradskyi Nb-255  Bacteria  normal  normal  0.473137 
 
 
-
 
NC_010498  EcSMS35_4949  DNA-binding response regulator CreB  33.77 
 
 
229 aa  130  1.0000000000000001e-29  Escherichia coli SMS-3-5  Bacteria  normal  normal 
 
 
-
 
NC_013131  Caci_8215  two component transcriptional regulator, winged helix family  35.06 
 
 
226 aa  131  1.0000000000000001e-29  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_007958  RPD_0893  winged helix family two component transcriptional regulator  38.26 
 
 
233 aa  131  1.0000000000000001e-29  Rhodopseudomonas palustris BisB5  Bacteria  normal  normal 
 
 
-
 
NC_010468  EcolC_3658  DNA-binding response regulator CreB  34.07 
 
 
229 aa  130  1.0000000000000001e-29  Escherichia coli ATCC 8739  Bacteria  normal  normal 
 
 
-
 
NC_011146  Gbem_1846  two component transcriptional regulator, winged helix family  36.64 
 
 
226 aa  130  2.0000000000000002e-29  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_010184  BcerKBAB4_5259  two component transcriptional regulator  36.56 
 
 
235 aa  130  2.0000000000000002e-29  Bacillus weihenstephanensis KBAB4  Bacteria  hitchhiker  0.000559572  n/a   
 
 
-
 
NC_009801  EcE24377A_4997  DNA-binding response regulator CreB  34.07 
 
 
229 aa  130  2.0000000000000002e-29  Escherichia coli E24377A  Bacteria  normal  n/a   
 
 
-
 
NC_011772  BCG9842_B5346  DNA-binding response regulator YycF  37 
 
 
235 aa  130  2.0000000000000002e-29  Bacillus cereus G9842  Bacteria  hitchhiker  0.000000234523  hitchhiker  0.00000000000323141 
 
 
-
 
NC_009800  EcHS_A4634  DNA-binding response regulator CreB  34.07 
 
 
229 aa  130  2.0000000000000002e-29  Escherichia coli HS  Bacteria  normal  n/a   
 
 
-
 
NC_007604  Synpcc7942_0556  two component transcriptional regulator  36.09 
 
 
237 aa  130  2.0000000000000002e-29  Synechococcus elongatus PCC 7942  Bacteria  normal  0.451756  normal 
 
 
-
 
NC_007778  RPB_0781  two component transcriptional regulator  37.83 
 
 
233 aa  130  2.0000000000000002e-29  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal  0.174075 
 
 
-
 
NC_009338  Mflv_0082  two component transcriptional regulator  34.63 
 
 
228 aa  130  2.0000000000000002e-29  Mycobacterium gilvum PYR-GCK  Bacteria  normal  normal 
 
 
-
 
NC_008043  TM1040_3335  two component transcriptional regulator  36.52 
 
 
230 aa  130  2.0000000000000002e-29  Ruegeria sp. TM1040  Bacteria  normal  normal  0.428008 
 
 
-
 
NC_008146  Mmcs_0661  two component transcriptional regulator  35.06 
 
 
228 aa  129  3e-29  Mycobacterium sp. MCS  Bacteria  normal  n/a   
 
 
-
 
NC_009483  Gura_3292  two component transcriptional regulator  35.09 
 
 
225 aa  129  3e-29  Geobacter uraniireducens Rf4  Bacteria  normal  0.580789  n/a   
 
 
-
 
NC_009457  VC0395_A0253  DNA-binding response regulator PhoB  35.9 
 
 
229 aa  130  3e-29  Vibrio cholerae O395  Bacteria  normal  n/a   
 
 
-
 
NC_008705  Mkms_0674  two component transcriptional regulator  35.06 
 
 
228 aa  129  3e-29  Mycobacterium sp. KMS  Bacteria  normal  normal  0.850641 
 
 
-
 
NC_008825  Mpe_A1277  two component transcriptional regulator  37.39 
 
 
233 aa  129  3e-29  Methylibium petroleiphilum PM1  Bacteria  normal  0.0649233  normal  0.253886 
 
 
-
 
NC_009077  Mjls_0654  two component transcriptional regulator  35.06 
 
 
228 aa  129  3e-29  Mycobacterium sp. JLS  Bacteria  normal  normal  0.682961 
 
 
-
 
NC_009674  Bcer98_4006  two component transcriptional regulator  36.56 
 
 
235 aa  129  4.0000000000000003e-29  Bacillus cytotoxicus NVH 391-98  Bacteria  normal  0.010356  n/a   
 
 
-
 
NC_013456  VEA_004385  phosphate regulon transcriptional regulatory protein PhoB  34.48 
 
 
229 aa  129  4.0000000000000003e-29  Vibrio sp. Ex25  Bacteria  normal  n/a   
 
 
-
 
NC_008609  Ppro_2228  two component transcriptional regulator  33.92 
 
 
222 aa  129  4.0000000000000003e-29  Pelobacter propionicus DSM 2379  Bacteria  hitchhiker  0.00319429  n/a   
 
 
-
 
NC_008726  Mvan_0831  two component transcriptional regulator  35.06 
 
 
228 aa  129  4.0000000000000003e-29  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  0.310785  normal 
 
 
-
 
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