50 homologs were found in PanDaTox collection
for query gene Sfri_1520 on replicon NC_008345
Organism: Shewanella frigidimarina NCIMB 400



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_008345  Sfri_1520  curli production assembly/transport component CsgG  100 
 
 
283 aa  580  1e-164  Shewanella frigidimarina NCIMB 400  Bacteria  normal  0.301126  n/a   
 
 
-
 
NC_009092  Shew_1729  curli production assembly/transport component CsgG  80.21 
 
 
282 aa  483  1e-135  Shewanella loihica PV-4  Bacteria  normal  0.214664  normal 
 
 
-
 
NC_009901  Spea_1820  curli production assembly/transport component CsgG  80.5 
 
 
282 aa  478  1e-134  Shewanella pealeana ATCC 700345  Bacteria  hitchhiker  0.0010127  n/a   
 
 
-
 
NC_010501  PputW619_2474  curli production assembly/transport component CsgG  53.51 
 
 
283 aa  291  8e-78  Pseudomonas putida W619  Bacteria  normal  normal  0.248627 
 
 
-
 
NC_009512  Pput_2299  curli production assembly/transport component CsgG  53.14 
 
 
283 aa  288  1e-76  Pseudomonas putida F1  Bacteria  normal  normal  0.85963 
 
 
-
 
NC_007492  Pfl01_1993  curli production assembly/transport component CsgG  49.48 
 
 
286 aa  286  2e-76  Pseudomonas fluorescens Pf0-1  Bacteria  hitchhiker  0.00606032  normal  0.0509044 
 
 
-
 
NC_010322  PputGB1_2465  curli production assembly/transport component CsgG  51.79 
 
 
283 aa  286  2e-76  Pseudomonas putida GB-1  Bacteria  normal  normal 
 
 
-
 
NC_002947  PP_3472  curli production assembly/transport component CsgG  52.59 
 
 
282 aa  286  4e-76  Pseudomonas putida KT2440  Bacteria  normal  normal  0.669591 
 
 
-
 
CP001637  EcDH1_2608  Curli production assembly/transport component CsgG  51.1 
 
 
277 aa  281  9e-75  Escherichia coli DH1  Bacteria  normal  0.0251589  n/a   
 
 
-
 
NC_012892  B21_01041  hypothetical protein  51.1 
 
 
277 aa  281  9e-75  Escherichia coli BL21  Bacteria  normal  0.756314  n/a   
 
 
-
 
NC_010498  EcSMS35_2096  curli production assembly/transport subunit CsgG  51.1 
 
 
277 aa  281  9e-75  Escherichia coli SMS-3-5  Bacteria  normal  normal  0.832846 
 
 
-
 
NC_010468  EcolC_2562  curli production assembly/transport component CsgG  51.1 
 
 
277 aa  281  9e-75  Escherichia coli ATCC 8739  Bacteria  normal  normal  0.25398 
 
 
-
 
NC_009801  EcE24377A_1156  curli production assembly/transport subunit CsgG  51.1 
 
 
277 aa  281  9e-75  Escherichia coli E24377A  Bacteria  normal  n/a   
 
 
-
 
CP001509  ECD_01034  outer membrane lipoprotein  51.1 
 
 
277 aa  281  9e-75  Escherichia coli BL21(DE3)  Bacteria  normal  0.743614  n/a   
 
 
-
 
NC_009436  Ent638_1553  curli production assembly/transport component CsgG  50.37 
 
 
277 aa  279  4e-74  Enterobacter sp. 638  Bacteria  normal  0.301914  normal  0.209181 
 
 
-
 
NC_011353  ECH74115_1416  curli production assembly/transport subunit CsgG  50.74 
 
 
277 aa  278  1e-73  Escherichia coli O157:H7 str. EC4115  Bacteria  normal  normal  0.0591449 
 
 
-
 
NC_009800  EcHS_A1155  curli production assembly/transport subunit CsgG  50.74 
 
 
277 aa  276  3e-73  Escherichia coli HS  Bacteria  normal  0.411032  n/a   
 
 
-
 
NC_011205  SeD_A2234  curli production assembly/transport component CsgG  53.47 
 
 
277 aa  274  1.0000000000000001e-72  Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853  Bacteria  normal  normal  0.734266 
 
 
-
 
NC_011149  SeAg_B2051  curli production assembly/transport component CsgG  53.47 
 
 
277 aa  274  1.0000000000000001e-72  Salmonella enterica subsp. enterica serovar Agona str. SL483  Bacteria  normal  0.351157  n/a   
 
 
-
 
NC_011094  SeSA_A1205  curli production assembly/transport component CsgG  53.47 
 
 
277 aa  274  1.0000000000000001e-72  Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633  Bacteria  normal  0.749123  normal  0.584294 
 
 
-
 
NC_011083  SeHA_C1250  curli production assembly/transport component CsgG  53.47 
 
 
277 aa  274  1.0000000000000001e-72  Salmonella enterica subsp. enterica serovar Heidelberg str. SL476  Bacteria  normal  normal  0.589697 
 
 
-
 
NC_011080  SNSL254_A1235  curli production assembly/transport component CsgG  53.47 
 
 
277 aa  274  1.0000000000000001e-72  Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  normal  0.562011  normal  0.947173 
 
 
-
 
NC_007511  Bcep18194_B2588  curli production assembly/transport component CsgG  51.44 
 
 
312 aa  257  1e-67  Burkholderia sp. 383  Bacteria  normal  normal 
 
 
-
 
NC_011138  MADE_01506  putative transport protein for curli synthesis  47.81 
 
 
253 aa  254  8e-67  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  n/a   
 
 
-
 
NC_008700  Sama_2857  curli production assembly/transport component CsgG, putative  47.86 
 
 
261 aa  236  3e-61  Shewanella amazonensis SB2B  Bacteria  normal  0.680035  normal 
 
 
-
 
NC_008321  Shewmr4_0870  curli production assembly/transport component CsgG  49.21 
 
 
268 aa  235  5.0000000000000005e-61  Shewanella sp. MR-4  Bacteria  normal  normal 
 
 
-
 
NC_008577  Shewana3_3253  curli production assembly/transport component CsgG  49.61 
 
 
268 aa  235  6e-61  Shewanella sp. ANA-3  Bacteria  normal  normal 
 
 
-
 
NC_008322  Shewmr7_3152  curli production assembly/transport component CsgG  49.21 
 
 
268 aa  235  6e-61  Shewanella sp. MR-7  Bacteria  normal  normal 
 
 
-
 
NC_007954  Sden_0971  curli production assembly/transport component CsgG  48.65 
 
 
265 aa  235  8e-61  Shewanella denitrificans OS217  Bacteria  normal  n/a   
 
 
-
 
NC_009997  Sbal195_1038  curli production assembly/transport component CsgG  48.82 
 
 
268 aa  234  1.0000000000000001e-60  Shewanella baltica OS195  Bacteria  normal  normal  0.766979 
 
 
-
 
NC_004347  SO_3685  curli production assembly/transport component CsgG, putative  47.62 
 
 
268 aa  231  1e-59  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_010506  Swoo_0643  curli production assembly/transport component CsgG  48.41 
 
 
255 aa  230  2e-59  Shewanella woodyi ATCC 51908  Bacteria  normal  0.0140532  unclonable  0.000000015798 
 
 
-
 
NC_009665  Shew185_1005  curli production assembly/transport component CsgG  48.76 
 
 
268 aa  228  6e-59  Shewanella baltica OS185  Bacteria  normal  n/a   
 
 
-
 
NC_009052  Sbal_3334  curli production assembly/transport component CsgG  48.76 
 
 
268 aa  228  1e-58  Shewanella baltica OS155  Bacteria  normal  n/a   
 
 
-
 
NC_011663  Sbal223_1026  Curli production assembly/transport component CsgG  48.76 
 
 
268 aa  228  1e-58  Shewanella baltica OS223  Bacteria  normal  normal 
 
 
-
 
NC_009438  Sputcn32_2984  curli production assembly/transport component CsgG  52.27 
 
 
268 aa  226  2e-58  Shewanella putrefaciens CN-32  Bacteria  normal  n/a   
 
 
-
 
NC_013730  Slin_4730  Curli production assembly/transport component CsgG  42.41 
 
 
478 aa  203  3e-51  Spirosoma linguale DSM 74  Bacteria  normal  normal  0.509697 
 
 
-
 
NC_009441  Fjoh_2351  curli production assembly/transport component CsgG  41.35 
 
 
454 aa  201  9.999999999999999e-51  Flavobacterium johnsoniae UW101  Bacteria  normal  n/a   
 
 
-
 
NC_011004  Rpal_3754  Curli production assembly/transport component CsgG  40.84 
 
 
291 aa  184  1.0000000000000001e-45  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.845428  n/a   
 
 
-
 
NC_013730  Slin_6061  Curli production assembly/transport component CsgG  44.89 
 
 
476 aa  171  9e-42  Spirosoma linguale DSM 74  Bacteria  normal  normal 
 
 
-
 
NC_010725  Mpop_0030  Curli production assembly/transport component CsgG  42.19 
 
 
307 aa  169  3e-41  Methylobacterium populi BJ001  Bacteria  normal  normal  0.133065 
 
 
-
 
NC_010511  M446_2419  curli production assembly/transport component CsgG  44.3 
 
 
308 aa  168  1e-40  Methylobacterium sp. 4-46  Bacteria  normal  normal  0.139852 
 
 
-
 
NC_011004  Rpal_1276  curli production assembly/transport component CsgG  41.41 
 
 
313 aa  160  2e-38  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_007958  RPD_2732  putative curli production assembly/transport component csgg precursor  36.43 
 
 
313 aa  157  2e-37  Rhodopseudomonas palustris BisB5  Bacteria  normal  0.0569292  normal 
 
 
-
 
NC_012792  Vapar_6349  Putative protein involved in formation of curli polymers-like protein  30.62 
 
 
467 aa  68.9  0.00000000009  Variovorax paradoxus S110  Bacteria  normal  n/a   
 
 
-
 
NC_007963  Csal_1066  curli production assembly/transport component CsgG  28.72 
 
 
271 aa  65.1  0.000000001  Chromohalobacter salexigens DSM 3043  Bacteria  normal  n/a   
 
 
-
 
NC_009719  Plav_2651  HfaB protein  27.14 
 
 
342 aa  61.2  0.00000002  Parvibaculum lavamentivorans DS-1  Bacteria  normal  normal 
 
 
-
 
NC_008347  Mmar10_2748  HfaB protein  25.97 
 
 
287 aa  59.3  0.00000006  Maricaulis maris MCS10  Bacteria  normal  0.941879  normal 
 
 
-
 
NC_010338  Caul_3727  HfaB protein  30.65 
 
 
336 aa  59.3  0.00000006  Caulobacter sp. K31  Bacteria  normal  normal 
 
 
-
 
NC_008347  Mmar10_1082  HfaB protein  29.37 
 
 
334 aa  47.4  0.0003  Maricaulis maris MCS10  Bacteria  normal  0.167536  normal 
 
 
-
 
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