7 homologs were found in PanDaTox collection
for query gene SeD_B0007 on replicon NC_011204
Organism: Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_011204  SeD_B0007  TlpA  100 
 
 
371 aa  722    Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853  Bacteria  normal  0.21191  normal 
 
 
-
 
NC_011061  Paes_2402  alpha-helical coiled-coil protein  55.38 
 
 
238 aa  196  6e-49  Prosthecochloris aestuarii DSM 271  Bacteria  normal  n/a   
 
 
-
 
NC_008740  Maqu_0198  alpha-helical coiled-coil protein  36.57 
 
 
194 aa  95.1  2e-18  Marinobacter aquaeolei VT8  Bacteria  normal  n/a   
 
 
-
 
NC_008739  Maqu_4061  hypothetical protein  31.18 
 
 
240 aa  71.2  0.00000000003  Marinobacter aquaeolei VT8  Bacteria  normal  n/a   
 
 
-
 
NC_009777  VIBHAR_p08234  hypothetical protein  28.66 
 
 
328 aa  62.4  0.00000001  Vibrio harveyi ATCC BAA-1116  Bacteria  hitchhiker  0.0000033969  n/a   
 
 
-
 
NC_010717  PXO_00424  TlpA  65.71 
 
 
42 aa  48.5  0.0002  Xanthomonas oryzae pv. oryzae PXO99A  Bacteria  normal  0.928838  n/a   
 
 
-
 
NC_008766  Ajs_4307  hypothetical protein  29.44 
 
 
335 aa  45.8  0.001  Acidovorax sp. JS42  Bacteria  normal  normal 
 
 
-
 
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