More than 300 homologs were found in PanDaTox collection
for query gene SeD_A2477 on replicon NC_011205
Organism: Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_011094  SeSA_A2368  DNA-binding transcriptional regulator BaeR  100 
 
 
240 aa  486  1e-136  Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633  Bacteria  normal  0.531777  normal  0.413146 
 
 
-
 
NC_011205  SeD_A2477  DNA-binding transcriptional regulator BaeR  100 
 
 
240 aa  486  1e-136  Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853  Bacteria  normal  normal 
 
 
-
 
NC_011080  SNSL254_A2317  DNA-binding transcriptional regulator BaeR  99.58 
 
 
240 aa  485  1e-136  Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  normal  0.539006  normal 
 
 
-
 
NC_011083  SeHA_C2361  DNA-binding transcriptional regulator BaeR  100 
 
 
240 aa  486  1e-136  Salmonella enterica subsp. enterica serovar Heidelberg str. SL476  Bacteria  normal  normal 
 
 
-
 
NC_011149  SeAg_B2261  DNA-binding transcriptional regulator BaeR  100 
 
 
240 aa  486  1e-136  Salmonella enterica subsp. enterica serovar Agona str. SL483  Bacteria  normal  0.806239  n/a   
 
 
-
 
NC_011353  ECH74115_3019  DNA-binding transcriptional regulator BaeR  96.25 
 
 
240 aa  467  1.0000000000000001e-131  Escherichia coli O157:H7 str. EC4115  Bacteria  normal  normal  0.0767733 
 
 
-
 
CP001509  ECD_01984  DNA-binding response regulator in two-component regulatory system with BaeS  96.67 
 
 
240 aa  469  1.0000000000000001e-131  Escherichia coli BL21(DE3)  Bacteria  normal  n/a   
 
 
-
 
CP001637  EcDH1_1577  two component transcriptional regulator, winged helix family  96.67 
 
 
240 aa  469  1.0000000000000001e-131  Escherichia coli DH1  Bacteria  normal  n/a   
 
 
-
 
NC_010468  EcolC_1562  DNA-binding transcriptional regulator BaeR  96.25 
 
 
240 aa  468  1.0000000000000001e-131  Escherichia coli ATCC 8739  Bacteria  normal  0.279171  normal  0.454228 
 
 
-
 
NC_010658  SbBS512_E1154  DNA-binding transcriptional regulator BaeR  96.25 
 
 
240 aa  468  1.0000000000000001e-131  Shigella boydii CDC 3083-94  Bacteria  normal  0.233901  n/a   
 
 
-
 
NC_009800  EcHS_A2221  DNA-binding transcriptional regulator BaeR  96.67 
 
 
240 aa  469  1.0000000000000001e-131  Escherichia coli HS  Bacteria  normal  n/a   
 
 
-
 
NC_010498  EcSMS35_0981  DNA-binding transcriptional regulator BaeR  96.67 
 
 
240 aa  469  1.0000000000000001e-131  Escherichia coli SMS-3-5  Bacteria  normal  0.443633  normal  0.661259 
 
 
-
 
NC_009801  EcE24377A_2371  DNA-binding transcriptional regulator BaeR  96.25 
 
 
240 aa  468  1.0000000000000001e-131  Escherichia coli E24377A  Bacteria  normal  n/a   
 
 
-
 
NC_012892  B21_01976  hypothetical protein  96.67 
 
 
240 aa  469  1.0000000000000001e-131  Escherichia coli BL21  Bacteria  normal  n/a   
 
 
-
 
NC_009436  Ent638_2689  DNA-binding transcriptional regulator BaeR  91.67 
 
 
240 aa  448  1e-125  Enterobacter sp. 638  Bacteria  normal  normal 
 
 
-
 
NC_010159  YpAngola_A3098  DNA-binding transcriptional regulator BaeR  74.69 
 
 
239 aa  359  3e-98  Yersinia pestis Angola  Bacteria  hitchhiker  0.0001052  normal 
 
 
-
 
NC_010465  YPK_1327  DNA-binding transcriptional regulator BaeR  77.63 
 
 
239 aa  358  5e-98  Yersinia pseudotuberculosis YPIII  Bacteria  normal  n/a   
 
 
-
 
NC_009708  YpsIP31758_1210  DNA-binding transcriptional regulator BaeR  77.63 
 
 
239 aa  358  5e-98  Yersinia pseudotuberculosis IP 31758  Bacteria  hitchhiker  0.000000000498147  n/a   
 
 
-
 
NC_009832  Spro_3557  DNA-binding transcriptional regulator BaeR  75.64 
 
 
239 aa  355  5e-97  Serratia proteamaculans 568  Bacteria  normal  normal 
 
 
-
 
NC_012912  Dd1591_1201  DNA-binding transcriptional regulator BaeR  72.41 
 
 
243 aa  339  2.9999999999999998e-92  Dickeya zeae Ech1591  Bacteria  normal  0.106709  n/a   
 
 
-
 
NC_013421  Pecwa_1307  DNA-binding transcriptional regulator BaeR  69.83 
 
 
242 aa  336  1.9999999999999998e-91  Pectobacterium wasabiae WPP163  Bacteria  normal  n/a   
 
 
-
 
NC_012917  PC1_2972  DNA-binding transcriptional regulator BaeR  69.83 
 
 
242 aa  333  1e-90  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  n/a   
 
 
-
 
NC_012880  Dd703_2707  DNA-binding transcriptional regulator BaeR  68.64 
 
 
243 aa  328  5.0000000000000004e-89  Dickeya dadantii Ech703  Bacteria  normal  0.33731  n/a   
 
 
-
 
NC_010524  Lcho_2476  two component transcriptional regulator  60.96 
 
 
241 aa  279  3e-74  Leptothrix cholodnii SP-6  Bacteria  n/a    hitchhiker  0.00000027247 
 
 
-
 
NC_003296  RS05646  two-component response regulator transcription regulator protein  61.26 
 
 
219 aa  276  3e-73  Ralstonia solanacearum GMI1000  Bacteria  normal  normal 
 
 
-
 
NC_010678  Rpic_4211  two component transcriptional regulator, winged helix family  58.11 
 
 
219 aa  267  1e-70  Ralstonia pickettii 12J  Bacteria  normal  normal 
 
 
-
 
NC_007005  Psyr_2868  response regulator receiver:transcriptional regulatory protein, C-terminal  58.37 
 
 
227 aa  267  1e-70  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  0.0808147  normal  0.133304 
 
 
-
 
NC_012857  Rpic12D_4321  two component transcriptional regulator, winged helix family  58.11 
 
 
219 aa  267  1e-70  Ralstonia pickettii 12D  Bacteria  normal  normal  0.0131168 
 
 
-
 
NC_010623  Bphy_3929  two component transcriptional regulator  56.36 
 
 
247 aa  265  4e-70  Burkholderia phymatum STM815  Bacteria  normal  normal 
 
 
-
 
NC_007498  Pcar_0360  two component signal transduction response regulator  57.59 
 
 
224 aa  265  4e-70  Pelobacter carbinolicus DSM 2380  Bacteria  normal  n/a   
 
 
-
 
NC_007963  Csal_0968  two component transcriptional regulator  55.11 
 
 
227 aa  258  7e-68  Chromohalobacter salexigens DSM 3043  Bacteria  unclonable  0.00000000899876  n/a   
 
 
-
 
NC_007954  Sden_0234  response regulator receiver  54.95 
 
 
221 aa  256  2e-67  Shewanella denitrificans OS217  Bacteria  normal  n/a   
 
 
-
 
NC_009483  Gura_3292  two component transcriptional regulator  55.86 
 
 
225 aa  253  1.0000000000000001e-66  Geobacter uraniireducens Rf4  Bacteria  normal  0.580789  n/a   
 
 
-
 
NC_012560  Avin_14310  Response regulator  56.76 
 
 
226 aa  253  2.0000000000000002e-66  Azotobacter vinelandii DJ  Bacteria  normal  n/a   
 
 
-
 
NC_009831  Ssed_2590  two component transcriptional regulator  53.74 
 
 
230 aa  251  5.000000000000001e-66  Shewanella sediminis HAW-EB3  Bacteria  normal  normal 
 
 
-
 
NC_007912  Sde_2724  response regulator receiver domain-containing protein  51.54 
 
 
230 aa  252  5.000000000000001e-66  Saccharophagus degradans 2-40  Bacteria  normal  0.480114  normal 
 
 
-
 
NC_002939  GSU3118  DNA-binding response regulator  54.91 
 
 
227 aa  251  9.000000000000001e-66  Geobacter sulfurreducens PCA  Bacteria  normal  n/a   
 
 
-
 
NC_003910  CPS_3305  DNA-binding response regulator BaeR  51.75 
 
 
232 aa  249  3e-65  Colwellia psychrerythraea 34H  Bacteria  normal  0.304306  n/a   
 
 
-
 
NC_008609  Ppro_2228  two component transcriptional regulator  54.75 
 
 
222 aa  246  3e-64  Pelobacter propionicus DSM 2379  Bacteria  hitchhiker  0.00319429  n/a   
 
 
-
 
NC_008709  Ping_0988  response regulator BaeR  54.34 
 
 
227 aa  243  1.9999999999999999e-63  Psychromonas ingrahamii 37  Bacteria  hitchhiker  0.000405458  normal  0.303622 
 
 
-
 
NC_009654  Mmwyl1_2872  two component transcriptional regulator  51.75 
 
 
226 aa  241  1e-62  Marinomonas sp. MWYL1  Bacteria  normal  0.702853  hitchhiker  0.00802276 
 
 
-
 
NC_008228  Patl_1527  two component transcriptional regulator  49.12 
 
 
230 aa  238  4e-62  Pseudoalteromonas atlantica T6c  Bacteria  normal  0.255733  n/a   
 
 
-
 
NC_007520  Tcr_0969  two component transcriptional regulator  51.13 
 
 
226 aa  238  5.999999999999999e-62  Thiomicrospira crunogena XCL-2  Bacteria  normal  0.165699  n/a   
 
 
-
 
NC_010506  Swoo_3962  two component transcriptional regulator  51.12 
 
 
221 aa  234  9e-61  Shewanella woodyi ATCC 51908  Bacteria  normal  normal 
 
 
-
 
NC_008752  Aave_1493  two component transcriptional regulator  53.12 
 
 
232 aa  234  1.0000000000000001e-60  Acidovorax citrulli AAC00-1  Bacteria  normal  0.12584  normal  0.340507 
 
 
-
 
NC_008700  Sama_1104  response regulator receiver protein  47.56 
 
 
222 aa  232  4.0000000000000004e-60  Shewanella amazonensis SB2B  Bacteria  normal  normal 
 
 
-
 
NC_012791  Vapar_4259  two component transcriptional regulator, winged helix family  51.77 
 
 
230 aa  229  2e-59  Variovorax paradoxus S110  Bacteria  normal  0.602522  n/a   
 
 
-
 
NC_011071  Smal_3840  two component transcriptional regulator, winged helix family  56.25 
 
 
229 aa  230  2e-59  Stenotrophomonas maltophilia R551-3  Bacteria  normal  normal 
 
 
-
 
NC_011146  Gbem_3296  two component transcriptional regulator, winged helix family  54.91 
 
 
223 aa  229  3e-59  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_012918  GM21_0951  two component transcriptional regulator, winged helix family  54.46 
 
 
223 aa  227  1e-58  Geobacter sp. M21  Bacteria  n/a    normal  0.207417 
 
 
-
 
NC_010717  PXO_03764  two-component system regulatory protein  51.71 
 
 
247 aa  222  3e-57  Xanthomonas oryzae pv. oryzae PXO99A  Bacteria  normal  n/a   
 
 
-
 
NC_008345  Sfri_1573  two component transcriptional regulator, winged helix family protein  49.55 
 
 
234 aa  221  9.999999999999999e-57  Shewanella frigidimarina NCIMB 400  Bacteria  normal  n/a   
 
 
-
 
NC_011992  Dtpsy_0977  two component transcriptional regulator, winged helix family  52.34 
 
 
242 aa  216  2.9999999999999998e-55  Acidovorax ebreus TPSY  Bacteria  normal  n/a   
 
 
-
 
NC_008782  Ajs_1059  two component transcriptional regulator  52.34 
 
 
242 aa  213  1.9999999999999998e-54  Acidovorax sp. JS42  Bacteria  normal  0.346912  normal 
 
 
-
 
NC_010002  Daci_3145  two component transcriptional regulator  48.89 
 
 
231 aa  209  3e-53  Delftia acidovorans SPH-1  Bacteria  decreased coverage  0.00258001  hitchhiker  0.000377263 
 
 
-
 
NC_013946  Mrub_0031  two component transcriptional regulator, winged helix family  46.61 
 
 
234 aa  192  3e-48  Meiothermus ruber DSM 1279  Bacteria  normal  normal 
 
 
-
 
NC_009656  PSPA7_0568  DNA-binding response regulator CreB  44.25 
 
 
229 aa  191  1e-47  Pseudomonas aeruginosa PA7  Bacteria  normal  0.0391692  n/a   
 
 
-
 
NC_007492  Pfl01_5196  DNA-binding response regulator CreB  45.95 
 
 
226 aa  190  1e-47  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal  0.247569 
 
 
-
 
NC_009439  Pmen_4120  DNA-binding response regulator CreB  44.69 
 
 
226 aa  191  1e-47  Pseudomonas mendocina ymp  Bacteria  normal  normal 
 
 
-
 
NC_009253  Dred_1903  two component transcriptional regulator  43.67 
 
 
230 aa  190  2e-47  Desulfotomaculum reducens MI-1  Bacteria  normal  n/a   
 
 
-
 
NC_014212  Mesil_1066  two component transcriptional regulator, winged helix family  46.15 
 
 
222 aa  189  2.9999999999999997e-47  Meiothermus silvanus DSM 9946  Bacteria  normal  normal 
 
 
-
 
NC_013385  Adeg_1028  two component transcriptional regulator, winged helix family  46.4 
 
 
237 aa  189  2.9999999999999997e-47  Ammonifex degensii KC4  Bacteria  normal  n/a   
 
 
-
 
NC_010320  Teth514_1155  two component transcriptional regulator  42.98 
 
 
231 aa  189  4e-47  Thermoanaerobacter sp. X514  Bacteria  decreased coverage  0.000000430064  n/a   
 
 
-
 
NC_010320  Teth514_0766  two component transcriptional regulator  42.54 
 
 
231 aa  188  8e-47  Thermoanaerobacter sp. X514  Bacteria  normal  0.585906  n/a   
 
 
-
 
NC_008463  PA14_06060  DNA-binding response regulator CreB  43.81 
 
 
229 aa  187  1e-46  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  hitchhiker  0.00519358 
 
 
-
 
NC_011830  Dhaf_1367  two component transcriptional regulator, winged helix family  44 
 
 
230 aa  187  2e-46  Desulfitobacterium hafniense DCB-2  Bacteria  hitchhiker  0.000000177207  n/a   
 
 
-
 
NC_008346  Swol_1681  response regulator receiver protein  42.6 
 
 
227 aa  186  3e-46  Syntrophomonas wolfei subsp. wolfei str. Goettingen  Bacteria  normal  0.0956507  n/a   
 
 
-
 
NC_011831  Cagg_2709  two component transcriptional regulator, winged helix family  45.41 
 
 
236 aa  185  4e-46  Chloroflexus aggregans DSM 9485  Bacteria  decreased coverage  0.0011921  normal 
 
 
-
 
NC_010581  Bind_3302  two component transcriptional regulator  42.99 
 
 
230 aa  186  4e-46  Beijerinckia indica subsp. indica ATCC 9039  Bacteria  normal  0.288231  normal  0.346827 
 
 
-
 
NC_013216  Dtox_1077  two component transcriptional regulator, winged helix family  41.45 
 
 
235 aa  185  5e-46  Desulfotomaculum acetoxidans DSM 771  Bacteria  normal  normal 
 
 
-
 
NC_009972  Haur_3061  two component transcriptional regulator  44.64 
 
 
227 aa  185  6e-46  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  0.799336  n/a   
 
 
-
 
NC_011830  Dhaf_1673  two component transcriptional regulator, winged helix family  42.42 
 
 
233 aa  185  6e-46  Desulfitobacterium hafniense DCB-2  Bacteria  normal  n/a   
 
 
-
 
NC_010320  Teth514_0588  two component transcriptional regulator  40.62 
 
 
227 aa  185  7e-46  Thermoanaerobacter sp. X514  Bacteria  unclonable  0.000000000451147  n/a   
 
 
-
 
NC_009767  Rcas_2782  two component transcriptional regulator  45.78 
 
 
231 aa  184  8e-46  Roseiflexus castenholzii DSM 13941  Bacteria  normal  0.92379  normal 
 
 
-
 
NC_010501  PputW619_4871  DNA-binding response regulator CreB  46.19 
 
 
226 aa  184  9e-46  Pseudomonas putida W619  Bacteria  normal  0.608103  normal  0.305164 
 
 
-
 
NC_008043  TM1040_3335  two component transcriptional regulator  42.48 
 
 
230 aa  184  1.0000000000000001e-45  Ruegeria sp. TM1040  Bacteria  normal  normal  0.428008 
 
 
-
 
NC_009253  Dred_0707  two component transcriptional regulator  43.23 
 
 
232 aa  184  1.0000000000000001e-45  Desulfotomaculum reducens MI-1  Bacteria  normal  n/a   
 
 
-
 
NC_010424  Daud_1419  two component transcriptional regulator  44.64 
 
 
231 aa  183  2.0000000000000003e-45  Candidatus Desulforudis audaxviator MP104C  Bacteria  normal  0.0720218  n/a   
 
 
-
 
NC_013170  Ccur_11690  response regulator with CheY-like receiver domain protein and winged-helix DNA-binding domain protein  44.64 
 
 
236 aa  183  2.0000000000000003e-45  Cryptobacterium curtum DSM 15641  Bacteria  normal  0.52451  normal 
 
 
-
 
NC_009012  Cthe_1288  two component transcriptional regulator  39.47 
 
 
228 aa  184  2.0000000000000003e-45  Clostridium thermocellum ATCC 27405  Bacteria  decreased coverage  0.00000000128008  n/a   
 
 
-
 
NC_009512  Pput_0357  DNA-binding response regulator CreB  44.39 
 
 
226 aa  182  4.0000000000000006e-45  Pseudomonas putida F1  Bacteria  normal  0.501858  normal  0.680539 
 
 
-
 
NC_013165  Shel_00330  response regulator with CheY-like receiver domain and winged-helix DNA-binding domain  44.83 
 
 
240 aa  181  6e-45  Slackia heliotrinireducens DSM 20476  Bacteria  decreased coverage  0.00972196  normal 
 
 
-
 
NC_013552  DhcVS_926  two-component system, OmpR family, response regulator  44.2 
 
 
227 aa  180  1e-44  Dehalococcoides sp. VS  Bacteria  hitchhiker  0.00200634  n/a   
 
 
-
 
NC_010001  Cphy_0154  two component transcriptional regulator  39.66 
 
 
238 aa  180  2e-44  Clostridium phytofermentans ISDg  Bacteria  normal  0.644268  n/a   
 
 
-
 
NC_010322  PputGB1_0360  DNA-binding response regulator CreB  44.14 
 
 
226 aa  180  2e-44  Pseudomonas putida GB-1  Bacteria  normal  0.48199  normal  0.18469 
 
 
-
 
NC_014212  Mesil_0738  two component transcriptional regulator, winged helix family  47.95 
 
 
223 aa  179  2.9999999999999997e-44  Meiothermus silvanus DSM 9946  Bacteria  decreased coverage  0.00000283527  decreased coverage  0.00121253 
 
 
-
 
NC_002936  DET1058  DNA-binding response regulator  42.98 
 
 
227 aa  178  4.999999999999999e-44  Dehalococcoides ethenogenes 195  Bacteria  decreased coverage  0.000187393  n/a   
 
 
-
 
NC_012034  Athe_1456  two component transcriptional regulator, winged helix family  40.36 
 
 
223 aa  178  4.999999999999999e-44  Anaerocellum thermophilum DSM 6725  Bacteria  decreased coverage  0.000183373  n/a   
 
 
-
 
NC_013131  Caci_4194  two component transcriptional regulator, winged helix family  41.81 
 
 
241 aa  179  4.999999999999999e-44  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.100781  normal  0.264432 
 
 
-
 
NC_007644  Moth_0070  two component transcriptional regulator  43.11 
 
 
229 aa  178  4.999999999999999e-44  Moorella thermoacetica ATCC 39073  Bacteria  normal  normal  0.834843 
 
 
-
 
NC_008699  Noca_0312  response regulator receiver  41.41 
 
 
233 aa  179  4.999999999999999e-44  Nocardioides sp. JS614  Bacteria  normal  0.0102436  n/a   
 
 
-
 
NC_010184  BcerKBAB4_1399  two component transcriptional regulator  44.49 
 
 
238 aa  178  5.999999999999999e-44  Bacillus weihenstephanensis KBAB4  Bacteria  normal  0.129694  n/a   
 
 
-
 
NC_011658  BCAH187_A1637  DNA-binding response regulator ResD  44.49 
 
 
250 aa  178  7e-44  Bacillus cereus AH187  Bacteria  normal  0.0246031  n/a   
 
 
-
 
NC_003909  BCE_1601  DNA-binding response regulator ResD  44.49 
 
 
250 aa  178  7e-44  Bacillus cereus ATCC 10987  Bacteria  normal  0.953648  n/a   
 
 
-
 
NC_011725  BCB4264_A1531  DNA-binding response regulator ResD  44.49 
 
 
238 aa  178  7e-44  Bacillus cereus B4264  Bacteria  normal  n/a   
 
 
-
 
NC_007644  Moth_0827  two component transcriptional regulator  44.49 
 
 
256 aa  178  7e-44  Moorella thermoacetica ATCC 39073  Bacteria  hitchhiker  0.00211389  normal  0.244563 
 
 
-
 
NC_011773  BCAH820_1569  DNA-binding response regulator ResD  44.49 
 
 
250 aa  178  7e-44  Bacillus cereus AH820  Bacteria  n/a    hitchhiker  1.45334e-32 
 
 
-
 
NC_011772  BCG9842_B3814  DNA-binding response regulator ResD  44.49 
 
 
238 aa  178  7e-44  Bacillus cereus G9842  Bacteria  normal  hitchhiker  3.95849e-16 
 
 
-
 
NC_005957  BT9727_1359  response regulator  44.49 
 
 
238 aa  178  8e-44  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  normal  0.0319788  n/a   
 
 
-
 
NC_006274  BCZK1358  response regulator  44.49 
 
 
238 aa  178  8e-44  Bacillus cereus E33L  Bacteria  normal  n/a   
 
 
-
 
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