46 homologs were found in PanDaTox collection
for query gene SeD_A1729 on replicon NC_011205
Organism: Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_011205  SeD_A1729  PTS system lactose/cellobiose-specific transporter subunit IIB  100 
 
 
93 aa  189  1e-47  Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853  Bacteria  normal  0.0436127  normal  0.448527 
 
 
-
 
NC_011149  SeAg_B1548  PTS system, Lactose/Cellobiose specific IIB subunit  98.92 
 
 
93 aa  188  2.9999999999999997e-47  Salmonella enterica subsp. enterica serovar Agona str. SL483  Bacteria  normal  n/a   
 
 
-
 
NC_011094  SeSA_A1730  PTS system, Lactose/Cellobiose specific IIB subunit  98.92 
 
 
93 aa  188  2.9999999999999997e-47  Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633  Bacteria  normal  normal 
 
 
-
 
NC_011083  SeHA_C1791  PTS system Lactose/Cellobiose specific IIB subunit  98.92 
 
 
93 aa  188  2.9999999999999997e-47  Salmonella enterica subsp. enterica serovar Heidelberg str. SL476  Bacteria  hitchhiker  0.00423056  normal 
 
 
-
 
NC_011080  SNSL254_A1727  PTS system lactose/cellobiose-specific transporter subunit IIB  98.92 
 
 
93 aa  188  2.9999999999999997e-47  Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  normal  0.542593  normal 
 
 
-
 
CP001509  ECD_04170  predicted enzyme IIB component of PTS  92.39 
 
 
92 aa  175  2e-43  Escherichia coli BL21(DE3)  Bacteria  normal  n/a   
 
 
-
 
CP001637  EcDH1_3695  phosphotransferase system lactose/cellobiose-specific IIB subunit  92.39 
 
 
92 aa  175  2e-43  Escherichia coli DH1  Bacteria  normal  n/a   
 
 
-
 
NC_012892  B21_04132  hypothetical protein  92.39 
 
 
92 aa  175  2e-43  Escherichia coli BL21  Bacteria  normal  n/a   
 
 
-
 
NC_013517  Sterm_3751  phosphotransferase system lactose/cellobiose- specific IIB subunit  50.55 
 
 
91 aa  95.1  2e-19  Sebaldella termitidis ATCC 33386  Bacteria  normal  n/a   
 
 
-
 
NC_013517  Sterm_3387  phosphotransferase system lactose/cellobiose- specific IIB subunit  40.66 
 
 
92 aa  70.5  0.000000000008  Sebaldella termitidis ATCC 33386  Bacteria  hitchhiker  0.0000879799  n/a   
 
 
-
 
NC_008309  HS_1143  PTS system galactitol-specific transporter subunit IIB  38.04 
 
 
94 aa  69.3  0.00000000002  Haemophilus somnus 129PT  Bacteria  normal  n/a   
 
 
-
 
NC_013517  Sterm_0033  phosphotransferase system lactose/cellobiose- specific IIB subunit  40.51 
 
 
94 aa  68.2  0.00000000003  Sebaldella termitidis ATCC 33386  Bacteria  normal  n/a   
 
 
-
 
NC_010498  EcSMS35_0971  PTS system galactitol-specific transporter subunit IIB  34.78 
 
 
94 aa  63.9  0.0000000006  Escherichia coli SMS-3-5  Bacteria  normal  normal  0.366549 
 
 
-
 
NC_011353  ECH74115_3072  PTS system galactitol-specific transporter subunit IIB  34.78 
 
 
94 aa  63.9  0.0000000006  Escherichia coli O157:H7 str. EC4115  Bacteria  normal  hitchhiker  0.000248985 
 
 
-
 
NC_011094  SeSA_A3448  PTS system galactitol-specific transporter subunit IIB  34.78 
 
 
94 aa  63.5  0.0000000009  Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633  Bacteria  normal  0.605443  normal 
 
 
-
 
NC_011083  SeHA_C3554  PTS system galactitol-specific transporter subunit IIB  34.78 
 
 
94 aa  63.5  0.0000000009  Salmonella enterica subsp. enterica serovar Heidelberg str. SL476  Bacteria  normal  0.306895  normal 
 
 
-
 
NC_011149  SeAg_B3446  PTS system galactitol-specific transporter subunit IIB  34.78 
 
 
94 aa  63.5  0.0000000009  Salmonella enterica subsp. enterica serovar Agona str. SL483  Bacteria  normal  n/a   
 
 
-
 
NC_011080  SNSL254_A3517  PTS system galactitol-specific transporter subunit IIB  34.78 
 
 
94 aa  63.5  0.0000000009  Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  normal  0.210683  normal 
 
 
-
 
NC_011205  SeD_A3614  PTS system galactitol-specific transporter subunit IIB  34.78 
 
 
94 aa  63.5  0.0000000009  Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853  Bacteria  normal  0.188912  normal 
 
 
-
 
NC_009800  EcHS_A2229  PTS system galactitol-specific transporter subunit IIB  34.78 
 
 
94 aa  63.2  0.000000001  Escherichia coli HS  Bacteria  normal  0.691967  n/a   
 
 
-
 
NC_009487  SaurJH9_0231  phosphotransferase system, lactose/cellobiose-specific IIB subunit  34.88 
 
 
92 aa  62.8  0.000000001  Staphylococcus aureus subsp. aureus JH9  Bacteria  normal  n/a   
 
 
-
 
NC_009632  SaurJH1_0237  phosphotransferase system lactose/cellobiose-specific IIB subunit  34.88 
 
 
92 aa  62.8  0.000000001  Staphylococcus aureus subsp. aureus JH1  Bacteria  normal  n/a   
 
 
-
 
NC_010468  EcolC_1554  PTS system galactitol-specific transporter subunit IIB  34.78 
 
 
94 aa  63.2  0.000000001  Escherichia coli ATCC 8739  Bacteria  normal  normal 
 
 
-
 
NC_012892  B21_01985  hypothetical protein  34.78 
 
 
94 aa  62.4  0.000000002  Escherichia coli BL21  Bacteria  normal  n/a   
 
 
-
 
CP001509  ECD_02019  galactitol-specific enzyme IIB component of PTS  34.78 
 
 
94 aa  62.4  0.000000002  Escherichia coli BL21(DE3)  Bacteria  normal  n/a   
 
 
-
 
NC_009801  EcE24377A_2381  PTS system galactitol-specific transporter subunit IIB  33.7 
 
 
94 aa  62.4  0.000000002  Escherichia coli E24377A  Bacteria  normal  n/a   
 
 
-
 
NC_011353  ECH74115_4824  PEP-dependent sugar transporting PTS family, IIB component  27.96 
 
 
93 aa  62  0.000000003  Escherichia coli O157:H7 str. EC4115  Bacteria  normal  normal 
 
 
-
 
NC_010658  SbBS512_E1145  PTS system galactitol-specific transporter subunit IIB  33.7 
 
 
94 aa  61.2  0.000000004  Shigella boydii CDC 3083-94  Bacteria  normal  0.274258  n/a   
 
 
-
 
NC_011094  SeSA_A3993  putative IIB component of PTS system  28.57 
 
 
95 aa  60.5  0.000000008  Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633  Bacteria  normal  0.971949  normal  0.466757 
 
 
-
 
NC_011083  SeHA_C4114  PTS system IIB component  28.57 
 
 
95 aa  60.5  0.000000008  Salmonella enterica subsp. enterica serovar Heidelberg str. SL476  Bacteria  normal  normal 
 
 
-
 
NC_011149  SeAg_B4009  putative IIB component of PTS system  28.57 
 
 
95 aa  60.5  0.000000008  Salmonella enterica subsp. enterica serovar Agona str. SL483  Bacteria  normal  n/a   
 
 
-
 
NC_011080  SNSL254_A4064  putative PTS system transporter subunit IIB  28.57 
 
 
95 aa  60.5  0.000000008  Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  normal  0.801033  normal 
 
 
-
 
NC_010498  EcSMS35_3768  PEP-dependent sugar transporting PTS family, IIB component  26.88 
 
 
93 aa  60.1  0.000000009  Escherichia coli SMS-3-5  Bacteria  normal  normal 
 
 
-
 
NC_013203  Apar_0151  phosphotransferase system lactose/cellobiose- specific IIB subunit  34.09 
 
 
93 aa  58.5  0.00000003  Atopobium parvulum DSM 20469  Bacteria  normal  normal 
 
 
-
 
NC_010468  EcolC_1646  phosphotransferase system lactose/cellobiose-specific IIB subunit  35.48 
 
 
97 aa  58.5  0.00000003  Escherichia coli ATCC 8739  Bacteria  normal  hitchhiker  0.000317921 
 
 
-
 
NC_013517  Sterm_3158  phosphotransferase system lactose/cellobiose- specific IIB subunit  34.07 
 
 
98 aa  56.6  0.0000001  Sebaldella termitidis ATCC 33386  Bacteria  normal  n/a   
 
 
-
 
NC_011083  SeHA_C3261  PTS system lactose/cellobiose-specific IIB subunit  40 
 
 
94 aa  55.8  0.0000002  Salmonella enterica subsp. enterica serovar Heidelberg str. SL476  Bacteria  normal  0.340834  normal 
 
 
-
 
NC_013517  Sterm_0215  phosphotransferase system lactose/cellobiose- specific IIB subunit  36.17 
 
 
96 aa  54.3  0.0000006  Sebaldella termitidis ATCC 33386  Bacteria  normal  n/a   
 
 
-
 
NC_010468  EcolC_1641  PTS system, galactitol-specific IIB component, putative  38.14 
 
 
94 aa  52.4  0.000002  Escherichia coli ATCC 8739  Bacteria  normal  0.408521  hitchhiker  0.00362196 
 
 
-
 
NC_008786  Veis_2221  phosphotransferase system, lactose/cellobiose-specific IIB subunit  30.43 
 
 
95 aa  52  0.000003  Verminephrobacter eiseniae EF01-2  Bacteria  normal  normal  0.99105 
 
 
-
 
NC_009668  Oant_4121  phosphotransferase system lactose/cellobiose-specific IIB subunit  29.35 
 
 
95 aa  50.1  0.00001  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  0.251352  n/a   
 
 
-
 
NC_008528  OEOE_0236  phosphotransferase system, galactitol-specific IIB component  30.34 
 
 
94 aa  49.7  0.00001  Oenococcus oeni PSU-1  Bacteria  normal  n/a   
 
 
-
 
NC_010320  Teth514_0122  response regulator receiver protein  31.11 
 
 
108 aa  49.7  0.00001  Thermoanaerobacter sp. X514  Bacteria  decreased coverage  0.000835049  n/a   
 
 
-
 
NC_013172  Bfae_09230  phosphotransferase system, galactitol-specific IIB component  29.35 
 
 
102 aa  48.5  0.00003  Brachybacterium faecium DSM 4810  Bacteria  normal  n/a   
 
 
-
 
NC_013517  Sterm_3722  phosphotransferase system lactose/cellobiose- specific IIB subunit  32.14 
 
 
99 aa  46.2  0.0002  Sebaldella termitidis ATCC 33386  Bacteria  hitchhiker  0.000000348098  n/a   
 
 
-
 
NC_013517  Sterm_1733  phosphotransferase system lactose/cellobiose- specific IIB subunit  32.22 
 
 
92 aa  44.7  0.0004  Sebaldella termitidis ATCC 33386  Bacteria  normal  n/a   
 
 
-
 
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