9 homologs were found in PanDaTox collection
for query gene SeD_A1256 on replicon NC_011205
Organism: Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853



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Replicon accession
Locus tag
Product
% identity
Alignment on query gene
Alignment on homolog gene
Length
Bit score

E-value
Organism name
Kingdom
Plasmid clonability
Plasmid unclonability p-value
Fosmid clonability
Fosmid unclonability p-value
Coverage Plot
PanDaTox homologs
Experimental validation
NC_011080  SNSL254_A2148  DsrA RNA  100 
 
 		 84 bp  167  5e-40  Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  hitchhiker  0.00259722  hitchhiker  0.00631883 
 
 
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NC_011083  SeHA_C2202  DsrA RNA  100 
 
 		 84 bp  167  5e-40  Salmonella enterica subsp. enterica serovar Heidelberg str. SL476  Bacteria  normal  0.0118698  normal  1 
 
 
-
 
NC_011094  SeSA_A2144  DsrA RNA  100 
 
 		 84 bp  167  5e-40  Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633  Bacteria  decreased coverage  0.00000594926  normal  0.122232 
 
 
-
 
NC_011149  SeAg_B1134  DsrA RNA  100 
 
 		 84 bp  167  5e-40  Salmonella enterica subsp. enterica serovar Agona str. SL483  Bacteria  unclonable  0.0000000000000335092  n/a   
 
 
-
 
NC_011205  SeD_A1256  DsrA RNA  100 
 
 		 84 bp  167  5e-40  Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853  Bacteria  normal  0.0308037  normal  0.998857 
 
 
-
 
NC_009800  EcHS_A4751  DsrA RNA  94.12 
 
 		 87 bp  95.6  2e-18  Escherichia coli HS  Bacteria  decreased coverage  1.64537e-16  n/a   
 
 
-
 
NC_010658  SbBS512_E0994  DsrA RNA  94.12 
 
 		 87 bp  95.6  2e-18  Shigella boydii CDC 3083-94  Bacteria  hitchhiker  0.0000000000000400564  n/a   
 
 
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NC_011353  ECH74115_2731  DsrA RNA  94.12 
 
 		 87 bp  95.6  2e-18  Escherichia coli O157:H7 str. EC4115  Bacteria  unclonable  0.00000000113606  normal  0.576104 
 
 
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NC_011205  SeD_A1255  hypothetical protein  100 
 
 		 123 bp  48.1  0.0003  Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853  Bacteria  decreased coverage  0.00474032  normal  0.887463 
 
 
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