More than 300 homologs were found in PanDaTox collection
for query gene SeD_A0858 on replicon NC_011205
Organism: Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_011149  SeAg_B0799  transcriptional regulator  100 
 
 
296 aa  607  1e-173  Salmonella enterica subsp. enterica serovar Agona str. SL483  Bacteria  normal  0.603179  n/a   
 
 
-
 
NC_011205  SeD_A0858  transcriptional regulator  100 
 
 
296 aa  607  1e-173  Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853  Bacteria  normal  0.311751  normal 
 
 
-
 
NC_011083  SeHA_C0890  transcriptional regulator  99.32 
 
 
296 aa  605  9.999999999999999e-173  Salmonella enterica subsp. enterica serovar Heidelberg str. SL476  Bacteria  normal  0.12488  normal 
 
 
-
 
NC_011080  SNSL254_A0827  transcriptional regulator  99.66 
 
 
296 aa  607  9.999999999999999e-173  Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  normal  0.237922  normal 
 
 
-
 
NC_011146  Gbem_1036  transcriptional regulator, LysR family  32.42 
 
 
300 aa  180  2e-44  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_003910  CPS_2850  LysR family substrate binding transcriptional regulator  34.48 
 
 
290 aa  179  5.999999999999999e-44  Colwellia psychrerythraea 34H  Bacteria  normal  0.46504  n/a   
 
 
-
 
NC_012918  GM21_3225  transcriptional regulator, LysR family  32.76 
 
 
300 aa  178  1e-43  Geobacter sp. M21  Bacteria  n/a    normal  0.456811 
 
 
-
 
NC_002939  GSU0266  LysR family transcriptional regulator  32.63 
 
 
307 aa  169  4e-41  Geobacter sulfurreducens PCA  Bacteria  normal  n/a   
 
 
-
 
NC_002939  GSU2787  LysR family transcriptional regulator  32.54 
 
 
305 aa  169  6e-41  Geobacter sulfurreducens PCA  Bacteria  normal  n/a   
 
 
-
 
NC_009654  Mmwyl1_1389  LysR family transcriptional regulator  32.18 
 
 
295 aa  167  2e-40  Marinomonas sp. MWYL1  Bacteria  normal  0.148304  normal 
 
 
-
 
NC_007517  Gmet_1684  LysR family transcriptional regulator  32.28 
 
 
299 aa  164  1.0000000000000001e-39  Geobacter metallireducens GS-15  Bacteria  hitchhiker  0.00688867  normal 
 
 
-
 
NC_009457  VC0395_A1224  LysR family transcriptional regulator  28.72 
 
 
289 aa  159  4e-38  Vibrio cholerae O395  Bacteria  normal  n/a   
 
 
-
 
NC_009675  Anae109_3231  LysR family transcriptional regulator  30.22 
 
 
297 aa  156  4e-37  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  normal 
 
 
-
 
NC_013456  VEA_003682  transcriptional regulator LysR family  29.76 
 
 
289 aa  155  8e-37  Vibrio sp. Ex25  Bacteria  normal  n/a   
 
 
-
 
NC_009901  Spea_1453  LysR family transcriptional regulator  31.83 
 
 
293 aa  153  2.9999999999999998e-36  Shewanella pealeana ATCC 700345  Bacteria  normal  0.248466  n/a   
 
 
-
 
NC_008709  Ping_2801  transcriptional regulator, substrate-binding, LysR family protein  30.47 
 
 
294 aa  152  5e-36  Psychromonas ingrahamii 37  Bacteria  normal  normal 
 
 
-
 
NC_009052  Sbal_2815  LysR family transcriptional regulator  30.1 
 
 
293 aa  152  8.999999999999999e-36  Shewanella baltica OS155  Bacteria  normal  n/a   
 
 
-
 
NC_009665  Shew185_2833  LysR family transcriptional regulator  30.1 
 
 
293 aa  152  8.999999999999999e-36  Shewanella baltica OS185  Bacteria  normal  n/a   
 
 
-
 
NC_009831  Ssed_2914  LysR family transcriptional regulator  31.27 
 
 
295 aa  151  1e-35  Shewanella sediminis HAW-EB3  Bacteria  normal  0.298049  normal 
 
 
-
 
NC_010506  Swoo_1720  LysR family transcriptional regulator  31.23 
 
 
289 aa  151  1e-35  Shewanella woodyi ATCC 51908  Bacteria  normal  0.178865  normal  0.0235109 
 
 
-
 
NC_009997  Sbal195_2958  LysR family transcriptional regulator  30.1 
 
 
293 aa  151  1e-35  Shewanella baltica OS195  Bacteria  normal  normal  0.0543101 
 
 
-
 
NC_011663  Sbal223_1543  transcriptional regulator, LysR family  30.1 
 
 
293 aa  150  2e-35  Shewanella baltica OS223  Bacteria  normal  normal 
 
 
-
 
NC_004347  SO_1916  LysR family transcriptional regulator  30.1 
 
 
293 aa  150  2e-35  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_008577  Shewana3_1691  LysR family transcriptional regulator  30.1 
 
 
293 aa  150  3e-35  Shewanella sp. ANA-3  Bacteria  normal  normal 
 
 
-
 
NC_008321  Shewmr4_1621  LysR family transcriptional regulator  30.1 
 
 
293 aa  150  3e-35  Shewanella sp. MR-4  Bacteria  normal  0.358841  normal 
 
 
-
 
NC_008322  Shewmr7_1696  LysR family transcriptional regulator  30.1 
 
 
293 aa  150  3e-35  Shewanella sp. MR-7  Bacteria  normal  normal 
 
 
-
 
NC_008709  Ping_2736  transcriptional regulator, substrate-binding of LysR family protein  27.87 
 
 
294 aa  149  4e-35  Psychromonas ingrahamii 37  Bacteria  normal  normal 
 
 
-
 
NC_009783  VIBHAR_02139  transcriptional regulator  28.37 
 
 
289 aa  148  8e-35  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_003910  CPS_4662  LysR family substrate binding transcriptional regulator  31.45 
 
 
293 aa  147  2.0000000000000003e-34  Colwellia psychrerythraea 34H  Bacteria  normal  n/a   
 
 
-
 
NC_009438  Sputcn32_1730  LysR family transcriptional regulator  29.76 
 
 
293 aa  147  2.0000000000000003e-34  Shewanella putrefaciens CN-32  Bacteria  normal  n/a   
 
 
-
 
NC_011831  Cagg_1912  transcriptional regulator, LysR family  29.79 
 
 
301 aa  146  4.0000000000000006e-34  Chloroflexus aggregans DSM 9485  Bacteria  decreased coverage  0.0000315182  normal  0.0709139 
 
 
-
 
NC_005945  BAS2271  LysR family transcriptional regulator  31.36 
 
 
300 aa  141  9.999999999999999e-33  Bacillus anthracis str. Sterne  Bacteria  normal  0.865675  n/a   
 
 
-
 
NC_011772  BCG9842_B2937  transcriptional regulator, LysR family  30.72 
 
 
300 aa  142  9.999999999999999e-33  Bacillus cereus G9842  Bacteria  normal  0.0387356  hitchhiker  0.00000808392 
 
 
-
 
NC_007530  GBAA_2439  LysR family transcriptional regulator  31.36 
 
 
300 aa  141  9.999999999999999e-33  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  0.763594  n/a   
 
 
-
 
NC_009485  BBta_7208  LysR family transcriptional regulator  28.97 
 
 
293 aa  141  9.999999999999999e-33  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.319627  normal 
 
 
-
 
NC_005957  BT9727_2231  LysR family transcriptional regulator  31.01 
 
 
300 aa  140  1.9999999999999998e-32  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  hitchhiker  0.000245311  n/a   
 
 
-
 
NC_009636  Smed_2186  LysR family transcriptional regulator  30.07 
 
 
302 aa  141  1.9999999999999998e-32  Sinorhizobium medicae WSM419  Bacteria  normal  normal  0.209379 
 
 
-
 
NC_010814  Glov_0836  transcriptional regulator, LysR family  30.07 
 
 
304 aa  140  3e-32  Geobacter lovleyi SZ  Bacteria  normal  0.192255  n/a   
 
 
-
 
NC_010322  PputGB1_2584  LysR family transcriptional regulator  28.17 
 
 
293 aa  139  3.9999999999999997e-32  Pseudomonas putida GB-1  Bacteria  normal  0.156706  normal  0.234942 
 
 
-
 
NC_011773  BCAH820_2455  transcriptional regulator, LysR family  31.01 
 
 
300 aa  140  3.9999999999999997e-32  Bacillus cereus AH820  Bacteria  n/a    normal 
 
 
-
 
NC_011830  Dhaf_0898  transcriptional regulator, LysR family  30.41 
 
 
293 aa  139  3.9999999999999997e-32  Desulfitobacterium hafniense DCB-2  Bacteria  normal  n/a   
 
 
-
 
NC_006274  BCZK2188  LysR family transcriptional regulator  31.01 
 
 
300 aa  139  6e-32  Bacillus cereus E33L  Bacteria  normal  0.540994  n/a   
 
 
-
 
NC_011725  BCB4264_A2396  transcriptional regulator, LysR family  31.12 
 
 
300 aa  139  7.999999999999999e-32  Bacillus cereus B4264  Bacteria  normal  n/a   
 
 
-
 
NC_002947  PP_3366  LysR family transcriptional regulator  28.17 
 
 
293 aa  138  1e-31  Pseudomonas putida KT2440  Bacteria  normal  normal  0.326699 
 
 
-
 
NC_009512  Pput_2392  LysR family transcriptional regulator  28.17 
 
 
293 aa  138  1e-31  Pseudomonas putida F1  Bacteria  normal  0.888596  normal 
 
 
-
 
NC_009668  Oant_2787  LysR family transcriptional regulator  29.73 
 
 
302 aa  138  1e-31  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  n/a   
 
 
-
 
NC_011658  BCAH187_A2533  transcriptional regulator, LysR family  30.66 
 
 
300 aa  137  2e-31  Bacillus cereus AH187  Bacteria  hitchhiker  0.00448001  n/a   
 
 
-
 
NC_010184  BcerKBAB4_2244  LysR family transcriptional regulator  31.38 
 
 
305 aa  137  3.0000000000000003e-31  Bacillus weihenstephanensis KBAB4  Bacteria  normal  n/a   
 
 
-
 
NC_008700  Sama_2215  LysR family transcriptional regulator  29.07 
 
 
293 aa  136  4e-31  Shewanella amazonensis SB2B  Bacteria  normal  normal 
 
 
-
 
NC_007005  Psyr_0909  regulatory protein, LysR:LysR, substrate-binding  29.21 
 
 
298 aa  136  5e-31  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal 
 
 
-
 
NC_002976  SERP2157  LysR family transcriptional regulator  27.59 
 
 
293 aa  135  6.0000000000000005e-31  Staphylococcus epidermidis RP62A  Bacteria  normal  n/a   
 
 
-
 
NC_008751  Dvul_0075  LysR family transcriptional regulator  29.6 
 
 
296 aa  135  6.0000000000000005e-31  Desulfovibrio vulgaris DP4  Bacteria  normal  normal 
 
 
-
 
NC_009720  Xaut_4335  LysR family transcriptional regulator  29.35 
 
 
297 aa  135  7.000000000000001e-31  Xanthobacter autotrophicus Py2  Bacteria  normal  0.385889  normal  0.337801 
 
 
-
 
NC_012850  Rleg_3722  transcriptional regulator, LysR family  27.61 
 
 
302 aa  134  3e-30  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal  0.791841 
 
 
-
 
NC_009675  Anae109_2848  LysR family transcriptional regulator  26.55 
 
 
310 aa  133  3e-30  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  0.93078  normal  0.0328698 
 
 
-
 
NC_002976  SERP2118  LysR family transcriptional regulator  29.15 
 
 
294 aa  132  6e-30  Staphylococcus epidermidis RP62A  Bacteria  normal  n/a   
 
 
-
 
NC_011369  Rleg2_3422  transcriptional regulator, LysR family  27.61 
 
 
302 aa  132  6e-30  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.670057  normal 
 
 
-
 
NC_003909  BCE_2469  LysR family transcriptional regulator  29.97 
 
 
300 aa  132  6.999999999999999e-30  Bacillus cereus ATCC 10987  Bacteria  normal  0.36421  n/a   
 
 
-
 
NC_006368  lpp0274  hypothetical protein  28.52 
 
 
294 aa  132  1.0000000000000001e-29  Legionella pneumophila str. Paris  Bacteria  n/a    n/a   
 
 
-
 
NC_007760  Adeh_0084  LysR family transcriptional regulator  26.57 
 
 
311 aa  131  2.0000000000000002e-29  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  0.446413  n/a   
 
 
-
 
NC_006369  lpl0269  hypothetical protein  29.29 
 
 
294 aa  130  3e-29  Legionella pneumophila str. Lens  Bacteria  n/a    n/a   
 
 
-
 
NC_009720  Xaut_3939  LysR family transcriptional regulator  27.93 
 
 
320 aa  130  3e-29  Xanthobacter autotrophicus Py2  Bacteria  normal  normal 
 
 
-
 
NC_009665  Shew185_0821  LysR family transcriptional regulator  29.47 
 
 
295 aa  129  5.0000000000000004e-29  Shewanella baltica OS185  Bacteria  normal  0.0342019  n/a   
 
 
-
 
NC_011663  Sbal223_0844  transcriptional regulator, LysR family  29.12 
 
 
295 aa  129  9.000000000000001e-29  Shewanella baltica OS223  Bacteria  normal  normal  0.033432 
 
 
-
 
NC_009997  Sbal195_0856  LysR family transcriptional regulator  29.12 
 
 
295 aa  129  9.000000000000001e-29  Shewanella baltica OS195  Bacteria  normal  0.252777  normal 
 
 
-
 
NC_009052  Sbal_3514  LysR family transcriptional regulator  29.12 
 
 
295 aa  128  1.0000000000000001e-28  Shewanella baltica OS155  Bacteria  normal  0.0347689  n/a   
 
 
-
 
NC_011145  AnaeK_0091  transcriptional regulator, LysR family  26.22 
 
 
311 aa  127  2.0000000000000002e-28  Anaeromyxobacter sp. K  Bacteria  normal  n/a   
 
 
-
 
NC_009092  Shew_0828  LysR family transcriptional regulator  29.97 
 
 
297 aa  127  2.0000000000000002e-28  Shewanella loihica PV-4  Bacteria  normal  normal 
 
 
-
 
NC_009438  Sputcn32_3153  LysR family transcriptional regulator  29.12 
 
 
295 aa  126  5e-28  Shewanella putrefaciens CN-32  Bacteria  hitchhiker  0.00364917  n/a   
 
 
-
 
NC_009092  Shew_1440  LysR family transcriptional regulator  27.4 
 
 
296 aa  125  6e-28  Shewanella loihica PV-4  Bacteria  normal  normal 
 
 
-
 
NC_007333  Tfu_2454  lysR family transcriptional regulator  28.33 
 
 
317 aa  125  9e-28  Thermobifida fusca YX  Bacteria  normal  n/a   
 
 
-
 
NC_011891  A2cp1_0101  transcriptional regulator, LysR family  25.87 
 
 
311 aa  125  9e-28  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  n/a   
 
 
-
 
NC_008321  Shewmr4_0699  LysR family transcriptional regulator  28.77 
 
 
295 aa  124  1e-27  Shewanella sp. MR-4  Bacteria  normal  normal 
 
 
-
 
NC_008322  Shewmr7_3323  LysR family transcriptional regulator  28.77 
 
 
295 aa  124  1e-27  Shewanella sp. MR-7  Bacteria  normal  0.0711414  normal 
 
 
-
 
NC_011149  SeAg_B4531  LysR family regulatory protein  28.57 
 
 
295 aa  124  2e-27  Salmonella enterica subsp. enterica serovar Agona str. SL483  Bacteria  normal  n/a   
 
 
-
 
NC_011080  SNSL254_A4616  LysR family regulatory protein  28.57 
 
 
295 aa  124  2e-27  Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  normal  normal 
 
 
-
 
NC_011666  Msil_3794  transcriptional regulator, LysR family  29.43 
 
 
294 aa  124  2e-27  Methylocella silvestris BL2  Bacteria  n/a    normal  0.689518 
 
 
-
 
NC_010622  Bphy_2922  LysR family transcriptional regulator  31.21 
 
 
319 aa  124  2e-27  Burkholderia phymatum STM815  Bacteria  normal  normal 
 
 
-
 
NC_011205  SeD_A4666  LysR family regulatory protein  28.57 
 
 
295 aa  124  2e-27  Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853  Bacteria  normal  0.54567  normal 
 
 
-
 
NC_008577  Shewana3_3435  LysR family transcriptional regulator  28.42 
 
 
295 aa  124  2e-27  Shewanella sp. ANA-3  Bacteria  normal  0.0107817  normal 
 
 
-
 
NC_011083  SeHA_C4614  LysR family regulatory protein  28.57 
 
 
295 aa  124  2e-27  Salmonella enterica subsp. enterica serovar Heidelberg str. SL476  Bacteria  normal  normal  0.342206 
 
 
-
 
NC_011094  SeSA_A4523  LysR family regulatory protein  28.57 
 
 
295 aa  124  2e-27  Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633  Bacteria  normal  normal 
 
 
-
 
NC_011772  BCG9842_B5618  transcriptional regulator, LysR family  29.01 
 
 
300 aa  123  4e-27  Bacillus cereus G9842  Bacteria  normal  hitchhiker  0.00000000000121214 
 
 
-
 
NC_008345  Sfri_0551  transcriptional regulator, LysR family protein  28.62 
 
 
294 aa  123  4e-27  Shewanella frigidimarina NCIMB 400  Bacteria  normal  0.215454  n/a   
 
 
-
 
NC_010184  BcerKBAB4_5012  LysR family transcriptional regulator  29.69 
 
 
294 aa  122  5e-27  Bacillus weihenstephanensis KBAB4  Bacteria  normal  n/a   
 
 
-
 
NC_011725  BCB4264_A5341  transcriptional regulator, LysR family  29.35 
 
 
294 aa  122  5e-27  Bacillus cereus B4264  Bacteria  normal  n/a   
 
 
-
 
NC_003909  BCE_5335  LysR family transcriptional regulator  29.01 
 
 
294 aa  122  6e-27  Bacillus cereus ATCC 10987  Bacteria  normal  n/a   
 
 
-
 
NC_011830  Dhaf_1575  transcriptional regulator, LysR family  26.8 
 
 
295 aa  122  6e-27  Desulfitobacterium hafniense DCB-2  Bacteria  hitchhiker  0.00000000000381269  n/a   
 
 
-
 
NC_011773  BCAH820_5310  transcriptional regulator, LysR family  29.35 
 
 
294 aa  122  7e-27  Bacillus cereus AH820  Bacteria  n/a    hitchhiker  2.1453799999999997e-20 
 
 
-
 
NC_005957  BT9727_4901  LysR family transcriptional regulator  29.01 
 
 
294 aa  122  8e-27  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  normal  n/a   
 
 
-
 
NC_008009  Acid345_1355  LysR family transcriptional regulator  28.47 
 
 
296 aa  122  9e-27  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  normal 
 
 
-
 
NC_004347  SO_0843  LysR family transcriptional regulator  27.72 
 
 
293 aa  121  9.999999999999999e-27  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_009436  Ent638_0271  LysR family transcriptional regulator  27.89 
 
 
295 aa  121  9.999999999999999e-27  Enterobacter sp. 638  Bacteria  normal  0.0648353  normal 
 
 
-
 
NC_009092  Shew_3562  LysR family transcriptional regulator  27.43 
 
 
296 aa  121  9.999999999999999e-27  Shewanella loihica PV-4  Bacteria  normal  normal 
 
 
-
 
NC_009487  SaurJH9_2565  LysR family transcriptional regulator  26.99 
 
 
292 aa  121  9.999999999999999e-27  Staphylococcus aureus subsp. aureus JH9  Bacteria  normal  n/a   
 
 
-
 
NC_009632  SaurJH1_2618  LysR substrate-binding  26.99 
 
 
292 aa  121  9.999999999999999e-27  Staphylococcus aureus subsp. aureus JH1  Bacteria  normal  n/a   
 
 
-
 
NC_010681  Bphyt_3760  transcriptional regulator, LysR family  29.28 
 
 
320 aa  121  1.9999999999999998e-26  Burkholderia phytofirmans PsJN  Bacteria  normal  normal 
 
 
-
 
NC_006274  BCZK4914  LysR family transcriptional regulator  28.67 
 
 
294 aa  120  3.9999999999999996e-26  Bacillus cereus E33L  Bacteria  normal  n/a   
 
 
-
 
NC_007651  BTH_I0023  LysR family transcriptional regulator  29.12 
 
 
307 aa  119  3.9999999999999996e-26  Burkholderia thailandensis E264  Bacteria  normal  0.189031  n/a   
 
 
-
 
NC_008309  HS_0036  DNA-binding transcriptional regulator OxyR  28.33 
 
 
304 aa  120  3.9999999999999996e-26  Haemophilus somnus 129PT  Bacteria  normal  n/a   
 
 
-
 
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