More than 300 homologs were found in PanDaTox collection
for query gene SeAg_B3723 on replicon NC_011149
Organism: Salmonella enterica subsp. enterica serovar Agona str. SL483



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
CP001509  ECD_03273  sigma 54-dependent transcriptional regulator of rtcBA expression  84.44 
 
 
532 aa  932    Escherichia coli BL21(DE3)  Bacteria  normal  0.385155  n/a   
 
 
-
 
CP001637  EcDH1_0292  Sigma 54 interacting domain protein  84.25 
 
 
532 aa  929    Escherichia coli DH1  Bacteria  normal  n/a   
 
 
-
 
NC_012912  Dd1591_0011  Sigma 54 interacting domain protein  61.93 
 
 
529 aa  660    Dickeya zeae Ech1591  Bacteria  normal  n/a   
 
 
-
 
NC_013421  Pecwa_0486  Sigma 54 interacting domain protein  60.46 
 
 
525 aa  659    Pectobacterium wasabiae WPP163  Bacteria  normal  n/a   
 
 
-
 
NC_003295  RSc0222  sigma-54 interacting transcription regulator protein  75.67 
 
 
535 aa  799    Ralstonia solanacearum GMI1000  Bacteria  normal  normal 
 
 
-
 
NC_010658  SbBS512_E3805  sigma-54 dependent transcriptional regulator RtcR  84.06 
 
 
532 aa  929    Shigella boydii CDC 3083-94  Bacteria  normal  0.590867  n/a   
 
 
-
 
NC_009439  Pmen_1196  regulator of RNA terminal phosphate cyclase  67.92 
 
 
533 aa  720    Pseudomonas mendocina ymp  Bacteria  normal  0.330253  normal 
 
 
-
 
NC_012791  Vapar_4423  Sigma 54 interacting domain protein  63.47 
 
 
537 aa  654    Variovorax paradoxus S110  Bacteria  normal  n/a   
 
 
-
 
NC_012892  B21_03225  hypothetical protein  84.44 
 
 
532 aa  932    Escherichia coli BL21  Bacteria  normal  0.39424  n/a   
 
 
-
 
NC_007492  Pfl01_1944  regulator of RNA terminal phosphate cyclase  69.38 
 
 
533 aa  736    Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal 
 
 
-
 
NC_007498  Pcar_2838  sigma 54 interactive regulator of RNA terminal phosphate cyclase  64 
 
 
530 aa  663    Pelobacter carbinolicus DSM 2380  Bacteria  normal  n/a   
 
 
-
 
NC_007511  Bcep18194_B2415  Sigma54-dependent transcriptional regulator RtcR  65.78 
 
 
567 aa  704    Burkholderia sp. 383  Bacteria  normal  0.855599  normal 
 
 
-
 
NC_009800  EcHS_A3619  sigma-54 dependent transcriptional regulator RtcR  84.06 
 
 
530 aa  924    Escherichia coli HS  Bacteria  normal  n/a   
 
 
-
 
NC_011353  ECH74115_4731  sigma-54 dependent transcriptional regulator RtcR  83.68 
 
 
532 aa  929    Escherichia coli O157:H7 str. EC4115  Bacteria  normal  normal 
 
 
-
 
NC_011149  SeAg_B3723  transcriptional regulatory protein RtcR  100 
 
 
527 aa  1085    Salmonella enterica subsp. enterica serovar Agona str. SL483  Bacteria  normal  n/a   
 
 
-
 
NC_010498  EcSMS35_3703  sigma-54 dependent transcriptional regulator RtcR  83.87 
 
 
532 aa  928    Escherichia coli SMS-3-5  Bacteria  normal  0.973563  normal  0.184346 
 
 
-
 
NC_011205  SeD_A3892  transcriptional regulator RtcR  99.62 
 
 
527 aa  1084    Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853  Bacteria  normal  0.246369  normal 
 
 
-
 
NC_010552  BamMC406_3589  regulator of RNA terminal phosphate cyclase  65.78 
 
 
538 aa  709    Burkholderia ambifaria MC40-6  Bacteria  normal  normal  0.858048 
 
 
-
 
NC_010002  Daci_0675  regulator of RNA terminal phosphate cyclase  62.83 
 
 
535 aa  648    Delftia acidovorans SPH-1  Bacteria  normal  normal 
 
 
-
 
NC_008061  Bcen_4669  regulator of RNA terminal phosphate cyclase  65.78 
 
 
604 aa  711    Burkholderia cenocepacia AU 1054  Bacteria  normal  0.186968  n/a   
 
 
-
 
NC_008391  Bamb_5434  regulator of RNA terminal phosphate cyclase  65.6 
 
 
538 aa  709    Burkholderia ambifaria AMMD  Bacteria  normal  0.327506  normal 
 
 
-
 
NC_008463  PA14_60600  transcriptional regulator RtcR  69.77 
 
 
531 aa  735    Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal 
 
 
-
 
NC_008543  Bcen2424_3694  regulator of RNA terminal phosphate cyclase  65.78 
 
 
538 aa  710    Burkholderia cenocepacia HI2424  Bacteria  normal  normal 
 
 
-
 
NC_010468  EcolC_0292  regulator of RNA terminal phosphate cyclase  84.44 
 
 
532 aa  932    Escherichia coli ATCC 8739  Bacteria  normal  normal 
 
 
-
 
NC_009656  PSPA7_5221  transcriptional regulator RtcR  69.77 
 
 
532 aa  733    Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_010515  Bcenmc03_3827  regulator of RNA terminal phosphate cyclase  64.9 
 
 
544 aa  677    Burkholderia cenocepacia MC0-3  Bacteria  normal  normal  0.632099 
 
 
-
 
NC_009801  EcE24377A_3899  sigma-54 dependent transcriptional regulator RtcR  84.06 
 
 
532 aa  928    Escherichia coli E24377A  Bacteria  normal  n/a   
 
 
-
 
NC_008781  Pnap_0497  regulator of RNA terminal phosphate cyclase  60.49 
 
 
531 aa  635    Polaromonas naphthalenivorans CJ2  Bacteria  normal  normal 
 
 
-
 
NC_012917  PC1_0403  Sigma 54 interacting domain protein  61.03 
 
 
527 aa  663    Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  n/a   
 
 
-
 
NC_007948  Bpro_1470  regulator of RNA terminal phosphate cyclase  58.19 
 
 
531 aa  625  1e-178  Polaromonas sp. JS666  Bacteria  normal  normal 
 
 
-
 
NC_008009  Acid345_1274  regulator of RNA terminal phosphate cyclase  60.27 
 
 
566 aa  612  9.999999999999999e-175  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  0.48322  normal 
 
 
-
 
NC_013440  Hoch_0234  Sigma 54 interacting domain protein  56.24 
 
 
576 aa  614  9.999999999999999e-175  Haliangium ochraceum DSM 14365  Bacteria  normal  normal 
 
 
-
 
NC_008340  Mlg_0258  two component, sigma54 specific, Fis family transcriptional regulator  44.21 
 
 
451 aa  187  4e-46  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  0.667822  normal 
 
 
-
 
NC_011145  AnaeK_1037  putative sigma54 specific transcriptional regulator  42.02 
 
 
449 aa  180  4.999999999999999e-44  Anaeromyxobacter sp. K  Bacteria  normal  0.349182  n/a   
 
 
-
 
NC_007760  Adeh_0975  sigma-54 dependent trancsriptional regulator  37.62 
 
 
457 aa  180  5.999999999999999e-44  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  n/a   
 
 
-
 
NC_011891  A2cp1_1034  sigma54 specific transcriptional regulator, Fis family  41.25 
 
 
449 aa  177  3e-43  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  n/a   
 
 
-
 
NC_010676  Bphyt_6059  two component, sigma54 specific, transcriptional regulator, Fis family  38.31 
 
 
458 aa  174  3.9999999999999995e-42  Burkholderia phytofirmans PsJN  Bacteria  normal  normal  0.0839917 
 
 
-
 
NC_008062  Bcen_6499  two component, sigma54 specific, Fis family transcriptional regulator  41.04 
 
 
458 aa  173  5e-42  Burkholderia cenocepacia AU 1054  Bacteria  normal  n/a   
 
 
-
 
NC_008544  Bcen2424_6734  two component, sigma54 specific, Fis family transcriptional regulator  41.04 
 
 
458 aa  173  5e-42  Burkholderia cenocepacia HI2424  Bacteria  normal  0.321079  normal 
 
 
-
 
NC_010512  Bcenmc03_6322  two component, sigma54 specific, Fis family transcriptional regulator  41.04 
 
 
458 aa  173  9e-42  Burkholderia cenocepacia MC0-3  Bacteria  normal  normal  0.385665 
 
 
-
 
NC_013422  Hneap_2100  two component, sigma54 specific, transcriptional regulator, Fis family  33.94 
 
 
466 aa  172  9e-42  Halothiobacillus neapolitanus c2  Bacteria  normal  n/a   
 
 
-
 
NC_010814  Glov_3076  two component, sigma54 specific, transcriptional regulator, Fis family  40.71 
 
 
454 aa  171  2e-41  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
NC_009675  Anae109_4112  sigma-54 dependent trancsriptional regulator  37.66 
 
 
475 aa  171  3e-41  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  0.0569417  normal  0.70115 
 
 
-
 
NC_010571  Oter_0041  two component, sigma54 specific, Fis family transcriptional regulator  43.57 
 
 
445 aa  170  5e-41  Opitutus terrae PB90-1  Bacteria  normal  normal  0.161462 
 
 
-
 
NC_013223  Dret_0168  PAS modulated sigma54 specific transcriptional regulator, Fis family  33.88 
 
 
462 aa  169  1e-40  Desulfohalobium retbaense DSM 5692  Bacteria  normal  normal  0.59199 
 
 
-
 
NC_009901  Spea_1756  two component, sigma54 specific, Fis family transcriptional regulator  31.87 
 
 
450 aa  169  1e-40  Shewanella pealeana ATCC 700345  Bacteria  normal  0.562134  n/a   
 
 
-
 
NC_011138  MADE_01723  two-component system response regulator  36.88 
 
 
446 aa  169  1e-40  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  n/a   
 
 
-
 
NC_008009  Acid345_3269  two component, sigma54 specific, Fis family transcriptional regulator  38.98 
 
 
467 aa  168  2e-40  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  normal  0.382263 
 
 
-
 
NC_009656  PSPA7_2554  type 4 fimbriae expression regulatory protein PilR  39.12 
 
 
452 aa  168  2.9999999999999998e-40  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_007512  Plut_1258  two component Fis family transcriptional regulator  38.21 
 
 
486 aa  167  2.9999999999999998e-40  Chlorobium luteolum DSM 273  Bacteria  normal  normal 
 
 
-
 
NC_010625  Bphy_5612  putative sigma54 specific transcriptional regulator  36.25 
 
 
772 aa  168  2.9999999999999998e-40  Burkholderia phymatum STM815  Bacteria  normal  normal 
 
 
-
 
NC_007484  Noc_2361  two component sigma-54 specific, transcriptional regulator, Fis famliy  32.76 
 
 
449 aa  167  4e-40  Nitrosococcus oceani ATCC 19707  Bacteria  normal  n/a   
 
 
-
 
NC_007498  Pcar_1208  two component signal transduction response regulator  39.36 
 
 
470 aa  167  4e-40  Pelobacter carbinolicus DSM 2380  Bacteria  normal  0.0354694  n/a   
 
 
-
 
NC_013037  Dfer_3238  two component, sigma54 specific, transcriptional regulator, Fis family  32.93 
 
 
457 aa  167  4e-40  Dyadobacter fermentans DSM 18053  Bacteria  normal  0.963577  normal  0.879643 
 
 
-
 
NC_008228  Patl_1603  two component, sigma54 specific, Fis family transcriptional regulator  37.22 
 
 
449 aa  167  5e-40  Pseudoalteromonas atlantica T6c  Bacteria  normal  n/a   
 
 
-
 
NC_011149  SeAg_B2721  sigma-54 dependent transcriptional regulator/response regulator  36.1 
 
 
445 aa  167  5.9999999999999996e-40  Salmonella enterica subsp. enterica serovar Agona str. SL483  Bacteria  normal  n/a   
 
 
-
 
NC_011080  SNSL254_A2763  transcriptional regulator ZraR  36.1 
 
 
445 aa  166  6.9999999999999995e-40  Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  normal  normal 
 
 
-
 
NC_010501  PputW619_0737  two component, sigma54 specific, Fis family transcriptional regulator  38.91 
 
 
479 aa  166  6.9999999999999995e-40  Pseudomonas putida W619  Bacteria  normal  hitchhiker  0.00000126889 
 
 
-
 
NC_011083  SeHA_C2825  transcriptional regulator ZraR  36.1 
 
 
445 aa  166  6.9999999999999995e-40  Salmonella enterica subsp. enterica serovar Heidelberg str. SL476  Bacteria  normal  0.479389  normal 
 
 
-
 
NC_011094  SeSA_A2804  transcriptional regulatory protein ZraR  36.1 
 
 
445 aa  166  6.9999999999999995e-40  Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633  Bacteria  normal  normal 
 
 
-
 
NC_011205  SeD_A2938  transcriptional regulator ZraR  36.1 
 
 
445 aa  166  6.9999999999999995e-40  Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853  Bacteria  normal  normal 
 
 
-
 
NC_010814  Glov_1684  PAS modulated sigma54 specific transcriptional regulator, Fis family  39.06 
 
 
459 aa  166  8e-40  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
NC_009654  Mmwyl1_4155  two component, sigma54 specific, Fis family transcriptional regulator  34.85 
 
 
455 aa  166  1.0000000000000001e-39  Marinomonas sp. MWYL1  Bacteria  normal  normal 
 
 
-
 
NC_010498  EcSMS35_2707  sigma-54 dependent response regulator  38.49 
 
 
444 aa  166  1.0000000000000001e-39  Escherichia coli SMS-3-5  Bacteria  normal  normal 
 
 
-
 
NC_010557  BamMC406_6393  two component, sigma54 specific, Fis family transcriptional regulator  32.95 
 
 
455 aa  166  1.0000000000000001e-39  Burkholderia ambifaria MC40-6  Bacteria  normal  normal  0.106085 
 
 
-
 
NC_011761  AFE_0447  sigma-54 dependent DNA-binding response regulator  37.01 
 
 
461 aa  166  1.0000000000000001e-39  Acidithiobacillus ferrooxidans ATCC 23270  Bacteria  normal  n/a   
 
 
-
 
NC_011206  Lferr_0608  two component, sigma54 specific, transcriptional regulator, Fis family  37.01 
 
 
461 aa  166  1.0000000000000001e-39  Acidithiobacillus ferrooxidans ATCC 53993  Bacteria  normal  normal 
 
 
-
 
NC_009800  EcHS_A2707  sigma-54 dependent response regulator  38.49 
 
 
444 aa  166  1.0000000000000001e-39  Escherichia coli HS  Bacteria  normal  n/a   
 
 
-
 
NC_008392  Bamb_5645  two component, sigma54 specific, Fis family transcriptional regulator  32.95 
 
 
455 aa  166  1.0000000000000001e-39  Burkholderia ambifaria AMMD  Bacteria  normal  0.668018  normal  0.173621 
 
 
-
 
NC_009801  EcE24377A_2839  sigma-54 dependent response regulator  38.49 
 
 
444 aa  166  1.0000000000000001e-39  Escherichia coli E24377A  Bacteria  normal  n/a   
 
 
-
 
NC_008752  Aave_0172  two component, sigma54 specific, Fis family transcriptional regulator  42.67 
 
 
458 aa  166  1.0000000000000001e-39  Acidovorax citrulli AAC00-1  Bacteria  normal  0.833234  hitchhiker  0.00415361 
 
 
-
 
NC_010322  PputGB1_4695  two component, sigma54 specific, Fis family transcriptional regulator  38.55 
 
 
480 aa  165  2.0000000000000002e-39  Pseudomonas putida GB-1  Bacteria  normal  hitchhiker  0.000157524 
 
 
-
 
NC_010725  Mpop_2876  two component, sigma54 specific, transcriptional regulator, Fis family  41.11 
 
 
496 aa  165  2.0000000000000002e-39  Methylobacterium populi BJ001  Bacteria  decreased coverage  0.0022159  normal 
 
 
-
 
NC_007498  Pcar_0498  two component response regulator  37.55 
 
 
451 aa  164  3e-39  Pelobacter carbinolicus DSM 2380  Bacteria  normal  n/a   
 
 
-
 
NC_013501  Rmar_1797  two component, sigma54 specific, transcriptional regulator, Fis family  39.84 
 
 
461 aa  164  3e-39  Rhodothermus marinus DSM 4252  Bacteria  normal  0.774224  n/a   
 
 
-
 
NC_013173  Dbac_2340  PAS modulated sigma54 specific transcriptional regulator, Fis family  32.83 
 
 
476 aa  164  3e-39  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  n/a   
 
 
-
 
CP001509  ECD_02446  predicted DNA-binding response regulator in two-component system  38.1 
 
 
444 aa  164  4.0000000000000004e-39  Escherichia coli BL21(DE3)  Bacteria  normal  n/a   
 
 
-
 
CP001637  EcDH1_1114  putative two component, sigma54 specific, transcriptional regulator, Fis family  38.1 
 
 
444 aa  164  4.0000000000000004e-39  Escherichia coli DH1  Bacteria  normal  0.922386  n/a   
 
 
-
 
NC_002977  MCA1713  sigma-54 dependent DNA-binding response regulator  38.89 
 
 
460 aa  164  4.0000000000000004e-39  Methylococcus capsulatus str. Bath  Bacteria  normal  0.91858  n/a   
 
 
-
 
NC_011353  ECH74115_3788  sigma-54 dependent response regulator  38.1 
 
 
444 aa  164  4.0000000000000004e-39  Escherichia coli O157:H7 str. EC4115  Bacteria  normal  normal 
 
 
-
 
NC_009483  Gura_1024  sigma-54 dependent trancsriptional regulator  32.3 
 
 
496 aa  164  4.0000000000000004e-39  Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
NC_010087  Bmul_5447  two component, sigma54 specific, Fis family transcriptional regulator  33.05 
 
 
455 aa  164  4.0000000000000004e-39  Burkholderia multivorans ATCC 17616  Bacteria  normal  hitchhiker  0.00491011 
 
 
-
 
NC_010658  SbBS512_E2919  sigma-54 dependent response regulator  38.1 
 
 
444 aa  164  4.0000000000000004e-39  Shigella boydii CDC 3083-94  Bacteria  normal  0.70731  n/a   
 
 
-
 
NC_011901  Tgr7_1973  response regulator receiver protein  36.3 
 
 
491 aa  164  4.0000000000000004e-39  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  n/a   
 
 
-
 
NC_009439  Pmen_2829  sigma-54 dependent trancsriptional regulator  35.23 
 
 
491 aa  164  4.0000000000000004e-39  Pseudomonas mendocina ymp  Bacteria  normal  0.280234  hitchhiker  0.00432701 
 
 
-
 
NC_010468  EcolC_1123  two component, sigma54 specific, Fis family transcriptional regulator  38.1 
 
 
444 aa  164  4.0000000000000004e-39  Escherichia coli ATCC 8739  Bacteria  normal  normal 
 
 
-
 
NC_012892  B21_02410  hypothetical protein  38.1 
 
 
444 aa  164  4.0000000000000004e-39  Escherichia coli BL21  Bacteria  normal  n/a   
 
 
-
 
NC_013440  Hoch_4153  two component, sigma54 specific, transcriptional regulator, Fis family  35.27 
 
 
466 aa  164  5.0000000000000005e-39  Haliangium ochraceum DSM 14365  Bacteria  normal  normal  0.11717 
 
 
-
 
NC_010501  PputW619_0070  putative sigma54 specific transcriptional regulator  39 
 
 
434 aa  164  5.0000000000000005e-39  Pseudomonas putida W619  Bacteria  normal  0.364137  hitchhiker  0.000000158676 
 
 
-
 
NC_010505  Mrad2831_2804  two component, sigma54 specific, Fis family transcriptional regulator  39.92 
 
 
494 aa  164  5.0000000000000005e-39  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.202391  normal  0.972852 
 
 
-
 
NC_008340  Mlg_2012  two component, sigma54 specific, Fis family transcriptional regulator  34.94 
 
 
484 aa  164  5.0000000000000005e-39  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  normal 
 
 
-
 
NC_009656  PSPA7_4274  transcriptional regulator FleQ  36.39 
 
 
490 aa  164  5.0000000000000005e-39  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_002947  PP_4696  putative two component, sigma54 specific, transcriptional regulator, Fis family  38.55 
 
 
480 aa  163  6e-39  Pseudomonas putida KT2440  Bacteria  normal  0.511164  decreased coverage  0.00000622606 
 
 
-
 
NC_008463  PA14_50220  transcriptional regulator FleQ  36.39 
 
 
490 aa  163  6e-39  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  decreased coverage  0.0000359147 
 
 
-
 
NC_008751  Dvul_0168  two component, sigma54 specific, Fis family transcriptional regulator  36.33 
 
 
459 aa  163  6e-39  Desulfovibrio vulgaris DP4  Bacteria  normal  0.564625  normal  0.730975 
 
 
-
 
NC_010814  Glov_0143  two component, sigma54 specific, transcriptional regulator, Fis family  36.09 
 
 
449 aa  163  7e-39  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
NC_007954  Sden_2970  sigma-54 factor, interaction region  39.51 
 
 
445 aa  163  8.000000000000001e-39  Shewanella denitrificans OS217  Bacteria  normal  n/a   
 
 
-
 
NC_010511  M446_3149  two component, sigma54 specific, Fis family transcriptional regulator  41.37 
 
 
495 aa  162  9e-39  Methylobacterium sp. 4-46  Bacteria  normal  normal  0.0143098 
 
 
-
 
NC_007760  Adeh_0106  two component, sigma54 specific, Fis family transcriptional regulator  37.79 
 
 
459 aa  163  9e-39  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  0.327572  n/a   
 
 
-
 
NC_009512  Pput_4561  two component, sigma54 specific, Fis family transcriptional regulator  38.55 
 
 
480 aa  163  9e-39  Pseudomonas putida F1  Bacteria  normal  0.601271  hitchhiker  0.000975449 
 
 
-
 
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