More than 300 homologs were found in PanDaTox collection
for query gene Sden_1963 on replicon NC_007954
Organism: Shewanella denitrificans OS217



Page 1 of 3    << first  < prev  1  2  3    next >  last >>   


Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_007954  Sden_1963  chemotaxis sensory transducer  100 
 
 
535 aa  1073    Shewanella denitrificans OS217  Bacteria  normal  n/a   
 
 
-
 
NC_003910  CPS_3300  methyl-accepting chemotaxis protein  44.34 
 
 
535 aa  412  1e-113  Colwellia psychrerythraea 34H  Bacteria  normal  0.102754  n/a   
 
 
-
 
NC_008740  Maqu_2525  methyl-accepting chemotaxis sensory transducer  40.08 
 
 
538 aa  365  1e-100  Marinobacter aquaeolei VT8  Bacteria  normal  n/a   
 
 
-
 
NC_009457  VC0395_A0916  methyl-accepting chemotaxis protein  32.96 
 
 
543 aa  281  1e-74  Vibrio cholerae O395  Bacteria  hitchhiker  0.0000029497  n/a   
 
 
-
 
NC_013456  VEA_003151  methyl-accepting chemotaxis protein  31.32 
 
 
541 aa  267  5e-70  Vibrio sp. Ex25  Bacteria  hitchhiker  0.00103096  n/a   
 
 
-
 
NC_008340  Mlg_1937  methyl-accepting chemotaxis sensory transducer  35.58 
 
 
541 aa  261  2e-68  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  0.158854  normal  0.960341 
 
 
-
 
NC_008789  Hhal_0443  methyl-accepting chemotaxis sensory transducer  33.58 
 
 
541 aa  259  9e-68  Halorhodospira halophila SL1  Bacteria  normal  n/a   
 
 
-
 
NC_008345  Sfri_0847  methyl-accepting chemotaxis sensory transducer  32.47 
 
 
620 aa  201  1.9999999999999998e-50  Shewanella frigidimarina NCIMB 400  Bacteria  normal  0.566037  n/a   
 
 
-
 
NC_009901  Spea_3169  methyl-accepting chemotaxis sensory transducer  37.29 
 
 
620 aa  199  1.0000000000000001e-49  Shewanella pealeana ATCC 700345  Bacteria  normal  0.225635  n/a   
 
 
-
 
NC_009831  Ssed_3502  methyl-accepting chemotaxis sensory transducer  37.82 
 
 
620 aa  198  2.0000000000000003e-49  Shewanella sediminis HAW-EB3  Bacteria  normal  0.666992  normal  0.2901 
 
 
-
 
NC_009831  Ssed_4463  methyl-accepting chemotaxis sensory transducer  37.89 
 
 
552 aa  197  4.0000000000000005e-49  Shewanella sediminis HAW-EB3  Bacteria  normal  normal  0.43301 
 
 
-
 
NC_009997  Sbal195_1793  methyl-accepting chemotaxis sensory transducer  35.71 
 
 
533 aa  196  8.000000000000001e-49  Shewanella baltica OS195  Bacteria  normal  0.0175347  normal  0.776493 
 
 
-
 
NC_011663  Sbal223_2530  methyl-accepting chemotaxis sensory transducer with Cache sensor  35.71 
 
 
533 aa  196  9e-49  Shewanella baltica OS223  Bacteria  normal  0.616311  hitchhiker  0.00580613 
 
 
-
 
NC_009438  Sputcn32_2347  methyl-accepting chemotaxis sensory transducer  34.43 
 
 
533 aa  196  1e-48  Shewanella putrefaciens CN-32  Bacteria  normal  n/a   
 
 
-
 
NC_007954  Sden_1091  chemotaxis sensory transducer  36.64 
 
 
620 aa  195  1e-48  Shewanella denitrificans OS217  Bacteria  normal  0.0174472  n/a   
 
 
-
 
NC_004578  PSPTO_3379  methyl-accepting chemotaxis protein  38.64 
 
 
559 aa  194  2e-48  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_010501  PputW619_2263  methyl-accepting chemotaxis sensory transducer  38.53 
 
 
541 aa  194  4e-48  Pseudomonas putida W619  Bacteria  normal  normal 
 
 
-
 
NC_009092  Shew_2954  methyl-accepting chemotaxis sensory transducer  36.18 
 
 
620 aa  193  6e-48  Shewanella loihica PV-4  Bacteria  decreased coverage  0.000679912  normal 
 
 
-
 
NC_009457  VC0395_A0868  methyl-accepting chemotaxis protein  37.24 
 
 
536 aa  193  8e-48  Vibrio cholerae O395  Bacteria  hitchhiker  0.000231989  n/a   
 
 
-
 
NC_011663  Sbal223_3551  methyl-accepting chemotaxis sensory transducer  38.28 
 
 
620 aa  192  1e-47  Shewanella baltica OS223  Bacteria  normal  hitchhiker  0.00183884 
 
 
-
 
NC_011901  Tgr7_0580  putative methyl-accepting chemotaxis sensory transducer  37.65 
 
 
679 aa  192  1e-47  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  n/a   
 
 
-
 
NC_013422  Hneap_1124  methyl-accepting chemotaxis sensory transducer  35.56 
 
 
547 aa  192  1e-47  Halothiobacillus neapolitanus c2  Bacteria  hitchhiker  0.00163985  n/a   
 
 
-
 
NC_009052  Sbal_0691  methyl-accepting chemotaxis sensory transducer  38.28 
 
 
620 aa  192  1e-47  Shewanella baltica OS155  Bacteria  normal  n/a   
 
 
-
 
NC_002947  PP_2310  methyl-accepting chemotaxis sensory transducer  35.34 
 
 
492 aa  191  2e-47  Pseudomonas putida KT2440  Bacteria  normal  0.178377  decreased coverage  0.00000773933 
 
 
-
 
NC_009512  Pput_3459  methyl-accepting chemotaxis sensory transducer  35.34 
 
 
492 aa  191  2e-47  Pseudomonas putida F1  Bacteria  normal  hitchhiker  0.000433284 
 
 
-
 
NC_011901  Tgr7_1674  methyl-accepting chemotaxis sensory transducer  35.61 
 
 
543 aa  191  4e-47  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  n/a   
 
 
-
 
NC_009665  Shew185_3619  methyl-accepting chemotaxis sensory transducer  37.98 
 
 
620 aa  191  4e-47  Shewanella baltica OS185  Bacteria  normal  n/a   
 
 
-
 
NC_010506  Swoo_3725  methyl-accepting chemotaxis sensory transducer  35.82 
 
 
620 aa  191  4e-47  Shewanella woodyi ATCC 51908  Bacteria  normal  0.403145  normal 
 
 
-
 
NC_007954  Sden_0099  chemotaxis sensory transducer  36.57 
 
 
639 aa  190  5e-47  Shewanella denitrificans OS217  Bacteria  unclonable  0.0000000152719  n/a   
 
 
-
 
NC_009438  Sputcn32_0796  methyl-accepting chemotaxis sensory transducer  39.81 
 
 
620 aa  190  5.999999999999999e-47  Shewanella putrefaciens CN-32  Bacteria  normal  n/a   
 
 
-
 
NC_009512  Pput_2091  methyl-accepting chemotaxis sensory transducer  37.89 
 
 
541 aa  190  5.999999999999999e-47  Pseudomonas putida F1  Bacteria  normal  0.596764  normal 
 
 
-
 
NC_009997  Sbal195_3742  methyl-accepting chemotaxis sensory transducer  37.98 
 
 
620 aa  190  7e-47  Shewanella baltica OS195  Bacteria  normal  normal  0.35347 
 
 
-
 
NC_008700  Sama_2609  putative methyl-accepting chemotaxis sensory transducer  35.51 
 
 
621 aa  189  1e-46  Shewanella amazonensis SB2B  Bacteria  normal  0.206567  normal 
 
 
-
 
NC_011901  Tgr7_2492  methyl-accepting chemotaxis sensory transducer  39.23 
 
 
572 aa  187  3e-46  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  n/a   
 
 
-
 
NC_009656  PSPA7_2546  putative chemotaxis transducer  34.8 
 
 
714 aa  187  4e-46  Pseudomonas aeruginosa PA7  Bacteria  normal  0.410637  n/a   
 
 
-
 
NC_010506  Swoo_4795  methyl-accepting chemotaxis sensory transducer  35.16 
 
 
638 aa  187  4e-46  Shewanella woodyi ATCC 51908  Bacteria  normal  0.884167  hitchhiker  0.000462611 
 
 
-
 
NC_010322  PputGB1_0343  methyl-accepting chemotaxis sensory transducer  36.67 
 
 
645 aa  187  4e-46  Pseudomonas putida GB-1  Bacteria  normal  0.675969  normal 
 
 
-
 
NC_008321  Shewmr4_3174  methyl-accepting chemotaxis sensory transducer  38.55 
 
 
620 aa  187  5e-46  Shewanella sp. MR-4  Bacteria  normal  0.733563  normal  0.773778 
 
 
-
 
NC_008700  Sama_2607  putative methyl-accepting chemotaxis sensory transducer  35.46 
 
 
541 aa  186  6e-46  Shewanella amazonensis SB2B  Bacteria  hitchhiker  0.00122932  normal 
 
 
-
 
NC_008322  Shewmr7_0792  methyl-accepting chemotaxis sensory transducer  38.55 
 
 
620 aa  186  8e-46  Shewanella sp. MR-7  Bacteria  normal  0.912748  normal  0.850506 
 
 
-
 
NC_008700  Sama_3522  putative methyl-accepting chemotaxis sensory transducer  33.95 
 
 
636 aa  186  9e-46  Shewanella amazonensis SB2B  Bacteria  normal  normal 
 
 
-
 
NC_008577  Shewana3_0764  methyl-accepting chemotaxis sensory transducer  38.55 
 
 
620 aa  186  9e-46  Shewanella sp. ANA-3  Bacteria  normal  normal 
 
 
-
 
NC_004347  SO_3582  methyl-accepting chemotaxis protein  36.09 
 
 
541 aa  186  1.0000000000000001e-45  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_009092  Shew_0085  methyl-accepting chemotaxis sensory transducer  34.29 
 
 
638 aa  185  1.0000000000000001e-45  Shewanella loihica PV-4  Bacteria  normal  0.0647334  normal 
 
 
-
 
NC_007005  Psyr_1150  chemotaxis sensory transducer  37.54 
 
 
551 aa  185  1.0000000000000001e-45  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal 
 
 
-
 
NC_010501  PputW619_1752  methyl-accepting chemotaxis sensory transducer  34.94 
 
 
492 aa  185  1.0000000000000001e-45  Pseudomonas putida W619  Bacteria  normal  hitchhiker  0.000000224536 
 
 
-
 
NC_008463  PA14_29760  putative chemotaxis transducer  35.05 
 
 
714 aa  185  2.0000000000000003e-45  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal 
 
 
-
 
NC_009438  Sputcn32_1020  methyl-accepting chemotaxis sensory transducer  36.36 
 
 
541 aa  185  2.0000000000000003e-45  Shewanella putrefaciens CN-32  Bacteria  hitchhiker  0.00762848  n/a   
 
 
-
 
NC_009901  Spea_4196  methyl-accepting chemotaxis sensory transducer  35.69 
 
 
552 aa  185  2.0000000000000003e-45  Shewanella pealeana ATCC 700345  Bacteria  normal  0.14959  n/a   
 
 
-
 
NC_009831  Ssed_3705  methyl-accepting chemotaxis sensory transducer  35.13 
 
 
541 aa  184  3e-45  Shewanella sediminis HAW-EB3  Bacteria  normal  0.0963791  normal 
 
 
-
 
NC_009439  Pmen_0734  methyl-accepting chemotaxis sensory transducer  40.32 
 
 
643 aa  184  3e-45  Pseudomonas mendocina ymp  Bacteria  normal  0.770301  normal 
 
 
-
 
NC_010322  PputGB1_2268  methyl-accepting chemotaxis sensory transducer  37.89 
 
 
541 aa  184  3e-45  Pseudomonas putida GB-1  Bacteria  normal  0.255239  normal 
 
 
-
 
NC_008340  Mlg_1098  methyl-accepting chemotaxis sensory transducer  31.75 
 
 
637 aa  184  3e-45  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  0.0167241  normal 
 
 
-
 
NC_009831  Ssed_4404  methyl-accepting chemotaxis sensory transducer  34.83 
 
 
638 aa  184  4.0000000000000006e-45  Shewanella sediminis HAW-EB3  Bacteria  normal  normal  0.0156105 
 
 
-
 
NC_010501  PputW619_4887  methyl-accepting chemotaxis sensory transducer  38.39 
 
 
645 aa  184  4.0000000000000006e-45  Pseudomonas putida W619  Bacteria  normal  normal  0.658451 
 
 
-
 
NC_007492  Pfl01_2970  chemotaxis sensory transducer  37.06 
 
 
712 aa  184  4.0000000000000006e-45  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal 
 
 
-
 
NC_010322  PputGB1_1912  methyl-accepting chemotaxis sensory transducer  34.92 
 
 
492 aa  183  5.0000000000000004e-45  Pseudomonas putida GB-1  Bacteria  normal  0.407863  hitchhiker  0.000000143908 
 
 
-
 
NC_004347  SO_4454  methyl-accepting chemotaxis protein  33.17 
 
 
642 aa  183  6e-45  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_003910  CPS_4372  methyl-accepting chemotaxis protein  37.05 
 
 
619 aa  183  8.000000000000001e-45  Colwellia psychrerythraea 34H  Bacteria  normal  n/a   
 
 
-
 
NC_009512  Pput_0342  methyl-accepting chemotaxis sensory transducer  38.39 
 
 
645 aa  182  9.000000000000001e-45  Pseudomonas putida F1  Bacteria  normal  0.860801  normal 
 
 
-
 
NC_008577  Shewana3_2521  methyl-accepting chemotaxis sensory transducer  37.39 
 
 
533 aa  182  9.000000000000001e-45  Shewanella sp. ANA-3  Bacteria  normal  hitchhiker  0.000172201 
 
 
-
 
NC_002947  PP_0320  methyl-accepting chemotaxis sensory transducer  38.39 
 
 
645 aa  182  1e-44  Pseudomonas putida KT2440  Bacteria  normal  decreased coverage  0.0000409011 
 
 
-
 
NC_011901  Tgr7_1963  putative methyl-accepting chemotaxis sensory transducer  38.39 
 
 
637 aa  182  1e-44  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  0.870205  n/a   
 
 
-
 
NC_008740  Maqu_0339  methyl-accepting chemotaxis sensory transducer  33.43 
 
 
558 aa  182  1e-44  Marinobacter aquaeolei VT8  Bacteria  normal  n/a   
 
 
-
 
NC_013456  VEA_003896  methyl-accepting chemotaxis protein  37.22 
 
 
545 aa  182  1e-44  Vibrio sp. Ex25  Bacteria  decreased coverage  0.000288698  n/a   
 
 
-
 
NC_010506  Swoo_0808  methyl-accepting chemotaxis sensory transducer  35.61 
 
 
541 aa  182  1e-44  Shewanella woodyi ATCC 51908  Bacteria  normal  normal 
 
 
-
 
NC_011901  Tgr7_1324  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  37.18 
 
 
523 aa  182  1e-44  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  0.587106  n/a   
 
 
-
 
NC_004578  PSPTO_3098  methyl-accepting chemotaxis protein  36.44 
 
 
642 aa  182  2e-44  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.398555  n/a   
 
 
-
 
NC_013889  TK90_0949  methyl-accepting chemotaxis sensory transducer  38.06 
 
 
636 aa  181  2e-44  Thioalkalivibrio sp. K90mix  Bacteria  normal  normal  0.0451727 
 
 
-
 
NC_009456  VC0395_0316  methyl-accepting chemotaxis protein  36.65 
 
 
652 aa  181  2e-44  Vibrio cholerae O395  Bacteria  normal  n/a   
 
 
-
 
NC_009439  Pmen_2000  methyl-accepting chemotaxis sensory transducer  37.74 
 
 
560 aa  182  2e-44  Pseudomonas mendocina ymp  Bacteria  normal  0.0144557  normal  0.0324669 
 
 
-
 
NC_007492  Pfl01_0450  chemotaxis sensory transducer  34.52 
 
 
645 aa  181  2.9999999999999997e-44  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal 
 
 
-
 
NC_007520  Tcr_1999  methyl-accepting chemotaxis sensory transducer  35.28 
 
 
405 aa  181  2.9999999999999997e-44  Thiomicrospira crunogena XCL-2  Bacteria  normal  n/a   
 
 
-
 
NC_007954  Sden_0712  chemotaxis sensory transducer  35.61 
 
 
541 aa  181  2.9999999999999997e-44  Shewanella denitrificans OS217  Bacteria  hitchhiker  0.0000566108  n/a   
 
 
-
 
NC_007954  Sden_2955  chemotaxis sensory transducer  36.87 
 
 
497 aa  181  2.9999999999999997e-44  Shewanella denitrificans OS217  Bacteria  normal  n/a   
 
 
-
 
NC_009783  VIBHAR_01753  hypothetical protein  37.39 
 
 
545 aa  181  4e-44  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_009052  Sbal_0282  methyl-accepting chemotaxis sensory transducer  36 
 
 
641 aa  180  4e-44  Shewanella baltica OS155  Bacteria  normal  0.0149105  n/a   
 
 
-
 
NC_011663  Sbal223_0279  methyl-accepting chemotaxis sensory transducer  36 
 
 
638 aa  181  4e-44  Shewanella baltica OS223  Bacteria  normal  0.983838  normal 
 
 
-
 
NC_009439  Pmen_3139  methyl-accepting chemotaxis sensory transducer  33.42 
 
 
640 aa  180  4.999999999999999e-44  Pseudomonas mendocina ymp  Bacteria  normal  0.753261  normal  0.0120166 
 
 
-
 
NC_008789  Hhal_0167  methyl-accepting chemotaxis sensory transducer  34.57 
 
 
540 aa  180  4.999999999999999e-44  Halorhodospira halophila SL1  Bacteria  normal  n/a   
 
 
-
 
NC_009831  Ssed_2325  methyl-accepting chemotaxis sensory transducer  36.66 
 
 
664 aa  180  4.999999999999999e-44  Shewanella sediminis HAW-EB3  Bacteria  normal  0.100516  hitchhiker  0.00420774 
 
 
-
 
NC_009665  Shew185_0275  methyl-accepting chemotaxis sensory transducer  36 
 
 
638 aa  180  4.999999999999999e-44  Shewanella baltica OS185  Bacteria  normal  n/a   
 
 
-
 
NC_009997  Sbal195_0283  methyl-accepting chemotaxis sensory transducer  36 
 
 
638 aa  180  4.999999999999999e-44  Shewanella baltica OS195  Bacteria  normal  0.411591  normal 
 
 
-
 
NC_007492  Pfl01_4022  chemotaxis sensory transducer  34.01 
 
 
493 aa  180  5.999999999999999e-44  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal 
 
 
-
 
NC_009052  Sbal_1015  methyl-accepting chemotaxis sensory transducer  36.13 
 
 
541 aa  180  7e-44  Shewanella baltica OS155  Bacteria  unclonable  0.0000000434326  n/a   
 
 
-
 
NC_004578  PSPTO_1334  methyl-accepting chemotaxis protein  36.47 
 
 
550 aa  180  7e-44  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_011901  Tgr7_0445  putative methyl-accepting chemotaxis sensory transducer  35.18 
 
 
395 aa  180  7e-44  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  n/a   
 
 
-
 
NC_007005  Psyr_2966  histidine kinase, HAMP region: chemotaxis sensory transducer  35.88 
 
 
642 aa  180  7e-44  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  0.249585  normal  0.113943 
 
 
-
 
NC_009052  Sbal_3441  methyl-accepting chemotaxis sensory transducer  34.9 
 
 
541 aa  179  8e-44  Shewanella baltica OS155  Bacteria  normal  n/a   
 
 
-
 
NC_009665  Shew185_0897  methyl-accepting chemotaxis sensory transducer  34.9 
 
 
541 aa  179  8e-44  Shewanella baltica OS185  Bacteria  normal  n/a   
 
 
-
 
NC_008463  PA14_29800  putative chemotaxis transducer  37.78 
 
 
561 aa  179  8e-44  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  decreased coverage  0.00431462  normal 
 
 
-
 
NC_009997  Sbal195_0931  methyl-accepting chemotaxis sensory transducer  35.18 
 
 
541 aa  179  8e-44  Shewanella baltica OS195  Bacteria  normal  normal  0.476721 
 
 
-
 
NC_004578  PSPTO_2254  methyl-accepting chemotaxis protein  32.65 
 
 
491 aa  179  9e-44  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.177753  n/a   
 
 
-
 
NC_009092  Shew_1929  methyl-accepting chemotaxis sensory transducer  35.94 
 
 
662 aa  179  1e-43  Shewanella loihica PV-4  Bacteria  normal  0.23754  normal  0.0188929 
 
 
-
 
NC_002947  PP_2111  aerotaxis receptor Aer-2  37.73 
 
 
521 aa  179  1e-43  Pseudomonas putida KT2440  Bacteria  normal  normal  0.0317394 
 
 
-
 
NC_004347  SO_3838  methyl-accepting chemotaxis protein  40.4 
 
 
620 aa  179  1e-43  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_011662  Tmz1t_0106  methyl-accepting chemotaxis sensory transducer  32.95 
 
 
540 aa  179  1e-43  Thauera sp. MZ1T  Bacteria  normal  n/a   
 
 
-
 
NC_013456  VEA_003139  methyl-accepting chemotaxis protein  35.1 
 
 
627 aa  179  1e-43  Vibrio sp. Ex25  Bacteria  normal  0.116124  n/a   
 
 
-
 
NC_007492  Pfl01_0447  chemotaxis sensory transducer  35.04 
 
 
541 aa  179  1e-43  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal 
 
 
-
 
NC_011663  Sbal223_0921  methyl-accepting chemotaxis sensory transducer  35.86 
 
 
541 aa  179  1e-43  Shewanella baltica OS223  Bacteria  normal  normal 
 
 
-
 
Page 1 of 3    << first  < prev  1  2  3    next >  last >>