More than 300 homologs were found in PanDaTox collection
for query gene Sde_1987 on replicon NC_007912
Organism: Saccharophagus degradans 2-40



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_007912  Sde_1987  regulatory subunit of cAMP-dependent protein kinases-like  100 
 
 
236 aa  481  1e-135  Saccharophagus degradans 2-40  Bacteria  normal  normal 
 
 
-
 
NC_007484  Noc_1631  cyclic nucleotide-binding protein  31.18 
 
 
257 aa  110  2.0000000000000002e-23  Nitrosococcus oceani ATCC 19707  Bacteria  normal  n/a   
 
 
-
 
NC_007643  Rru_A1622  Crp/FNR family transcriptional regulator  32.34 
 
 
259 aa  103  3e-21  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  0.366469  n/a   
 
 
-
 
NC_008340  Mlg_0631  cyclic nucleotide-binding protein  27.81 
 
 
235 aa  95.5  7e-19  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  normal  0.0164371 
 
 
-
 
NC_009379  Pnuc_0796  cyclic nucleotide-binding protein  32.28 
 
 
238 aa  94.4  1e-18  Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1  Bacteria  normal  n/a   
 
 
-
 
NC_008789  Hhal_0917  CRP/FNR family transcriptional regulator  27.81 
 
 
254 aa  91.3  1e-17  Halorhodospira halophila SL1  Bacteria  normal  n/a   
 
 
-
 
NC_010531  Pnec_1040  cyclic nucleotide-binding protein  30.12 
 
 
238 aa  87  2e-16  Polynucleobacter necessarius subsp. necessarius STIR1  Bacteria  normal  normal  0.464794 
 
 
-
 
NC_014212  Mesil_1482  transcriptional regulator, Crp/Fnr family  30.93 
 
 
196 aa  77.8  0.0000000000001  Meiothermus silvanus DSM 9946  Bacteria  normal  0.053801  hitchhiker  0.0000318932 
 
 
-
 
NC_013946  Mrub_0375  Crp/Fnr family transcriptional regulator  31.18 
 
 
196 aa  74.3  0.000000000001  Meiothermus ruber DSM 1279  Bacteria  normal  0.887845  normal 
 
 
-
 
NC_011761  AFE_0270  transcriptional regulator, Crp/Fnr family  25.42 
 
 
233 aa  71.6  0.00000000001  Acidithiobacillus ferrooxidans ATCC 23270  Bacteria  normal  0.479827  n/a   
 
 
-
 
NC_011206  Lferr_0447  transcriptional regulator, Crp/Fnr family  25.42 
 
 
233 aa  71.6  0.00000000001  Acidithiobacillus ferrooxidans ATCC 53993  Bacteria  normal  hitchhiker  0.000251756 
 
 
-
 
NC_009621  Smed_6276  CRP/FNR family transcriptional regulator  28.34 
 
 
231 aa  68.2  0.0000000001  Sinorhizobium medicae WSM419  Bacteria  normal  0.298402  normal  0.17195 
 
 
-
 
NC_013132  Cpin_0678  transcriptional regulator, Crp/Fnr family  27.38 
 
 
236 aa  67  0.0000000002  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.0236133  normal 
 
 
-
 
NC_008009  Acid345_3455  Crp/FNR family transcriptional regulator  28.65 
 
 
237 aa  64.7  0.000000001  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  normal  0.063385 
 
 
-
 
NC_011887  Mnod_8112  transcriptional regulator, Crp/Fnr family  26.79 
 
 
229 aa  63.9  0.000000002  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_013169  Ksed_20120  cAMP-binding protein  26.09 
 
 
223 aa  64.3  0.000000002  Kytococcus sedentarius DSM 20547  Bacteria  hitchhiker  0.00290987  normal  0.0142715 
 
 
-
 
NC_011761  AFE_1658  transcriptional regulator, Crp/Fnr family  30.98 
 
 
222 aa  63.5  0.000000003  Acidithiobacillus ferrooxidans ATCC 23270  Bacteria  normal  0.365354  n/a   
 
 
-
 
NC_011206  Lferr_1356  transcriptional regulator, Crp/Fnr family  30.98 
 
 
222 aa  63.5  0.000000003  Acidithiobacillus ferrooxidans ATCC 53993  Bacteria  normal  normal 
 
 
-
 
NC_007520  Tcr_1487  Crp/FNR family transcriptional regulator  24.1 
 
 
240 aa  63.2  0.000000004  Thiomicrospira crunogena XCL-2  Bacteria  normal  0.1472  n/a   
 
 
-
 
NC_004311  BRA0262  Crp/FNR family transcriptional regulator  25.77 
 
 
231 aa  62.8  0.000000005  Brucella suis 1330  Bacteria  normal  n/a   
 
 
-
 
NC_009504  BOV_A0238  Crp/FNR family transcriptional regulator  25.77 
 
 
231 aa  62.8  0.000000005  Brucella ovis ATCC 25840  Bacteria  normal  n/a   
 
 
-
 
NC_003910  CPS_1996  Crp/FNR family transcriptional regulator  30 
 
 
261 aa  62.4  0.000000006  Colwellia psychrerythraea 34H  Bacteria  normal  0.249085  n/a   
 
 
-
 
NC_008061  Bcen_5122  Crp/FNR family transcriptional regulator  25.77 
 
 
248 aa  61.6  0.00000001  Burkholderia cenocepacia AU 1054  Bacteria  normal  n/a   
 
 
-
 
NC_009504  BOV_A0257  transcriptional regulator NnrR  26.01 
 
 
232 aa  61.6  0.00000001  Brucella ovis ATCC 25840  Bacteria  normal  n/a   
 
 
-
 
NC_010086  Bmul_5297  Crp/FNR family transcriptional regulator  25.4 
 
 
248 aa  61.6  0.00000001  Burkholderia multivorans ATCC 17616  Bacteria  normal  normal 
 
 
-
 
NC_008543  Bcen2424_5737  Crp/FNR family transcriptional regulator  25.77 
 
 
248 aa  61.6  0.00000001  Burkholderia cenocepacia HI2424  Bacteria  normal  normal  0.188641 
 
 
-
 
NC_014151  Cfla_0719  transcriptional regulator, Crp/Fnr family  27.65 
 
 
257 aa  60.8  0.00000002  Cellulomonas flavigena DSM 20109  Bacteria  normal  hitchhiker  0.0000204419 
 
 
-
 
NC_013411  GYMC61_1592  transcriptional regulator, Crp/Fnr family  25.82 
 
 
228 aa  60.8  0.00000002  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_010524  Lcho_1254  Crp/FNR family transcriptional regulator  26.51 
 
 
247 aa  60.8  0.00000002  Leptothrix cholodnii SP-6  Bacteria  n/a    hitchhiker  0.000191054 
 
 
-
 
NC_010515  Bcenmc03_4486  Crp/FNR family transcriptional regulator  25.77 
 
 
248 aa  60.5  0.00000002  Burkholderia cenocepacia MC0-3  Bacteria  normal  normal 
 
 
-
 
NC_008254  Meso_3865  Crp/FNR family transcriptional regulator  25.77 
 
 
252 aa  60.5  0.00000002  Chelativorans sp. BNC1  Bacteria  normal  0.925805  n/a   
 
 
-
 
NC_011830  Dhaf_1167  transcriptional regulator, Crp/Fnr family  23.86 
 
 
239 aa  60.1  0.00000003  Desulfitobacterium hafniense DCB-2  Bacteria  hitchhiker  0.0000625437  n/a   
 
 
-
 
NC_007511  Bcep18194_B3138  Crp/FNR family transcriptional regulator  25.14 
 
 
248 aa  60.5  0.00000003  Burkholderia sp. 383  Bacteria  normal  normal 
 
 
-
 
NC_008009  Acid345_1498  Crp/FNR family transcriptional regulator  27.17 
 
 
239 aa  60.5  0.00000003  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  0.163113  normal 
 
 
-
 
NC_008255  CHU_1971  transcriptional regulator  28.57 
 
 
237 aa  60.1  0.00000003  Cytophaga hutchinsonii ATCC 33406  Bacteria  normal  normal  0.644199 
 
 
-
 
NC_008391  Bamb_5008  Crp/FNR family transcriptional regulator  24.34 
 
 
249 aa  59.7  0.00000003  Burkholderia ambifaria AMMD  Bacteria  normal  normal 
 
 
-
 
NC_008025  Dgeo_1419  Crp/FNR family transcriptional regulator  27.46 
 
 
208 aa  59.7  0.00000004  Deinococcus geothermalis DSM 11300  Bacteria  normal  normal  0.0779815 
 
 
-
 
NC_008699  Noca_1660  Crp/FNR family transcriptional regulator  24.66 
 
 
261 aa  59.7  0.00000004  Nocardioides sp. JS614  Bacteria  normal  0.74426  n/a   
 
 
-
 
NC_010552  BamMC406_3149  Crp/FNR family transcriptional regulator  24.34 
 
 
249 aa  59.7  0.00000004  Burkholderia ambifaria MC40-6  Bacteria  normal  normal 
 
 
-
 
NC_013739  Cwoe_5808  transcriptional regulator, Crp/Fnr family  27.03 
 
 
231 aa  59.3  0.00000005  Conexibacter woesei DSM 14684  Bacteria  normal  0.254135  normal  0.0101482 
 
 
-
 
NC_011772  BCG9842_B3840  putative transcriptional regulator  26.79 
 
 
170 aa  59.3  0.00000005  Bacillus cereus G9842  Bacteria  normal  0.143531  hitchhiker  0.000000000101512 
 
 
-
 
NC_009668  Oant_3114  CRP/FNR family transcriptional regulator  26.01 
 
 
232 aa  59.3  0.00000005  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  n/a   
 
 
-
 
NC_011725  BCB4264_A1505  putative transcriptional regulator  26.79 
 
 
170 aa  59.3  0.00000005  Bacillus cereus B4264  Bacteria  normal  0.399561  n/a   
 
 
-
 
NC_005957  BT9727_1958  Crp/FNR family transcriptional regulator  28.36 
 
 
230 aa  58.9  0.00000006  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  normal  0.0304498  n/a   
 
 
-
 
NC_013889  TK90_0787  transcriptional regulator, Crp/Fnr family  21.71 
 
 
243 aa  58.9  0.00000006  Thioalkalivibrio sp. K90mix  Bacteria  normal  normal 
 
 
-
 
NC_006274  BCZK1936  Crp/FNR family transcriptional regulator  28.36 
 
 
230 aa  58.9  0.00000006  Bacillus cereus E33L  Bacteria  normal  0.308171  n/a   
 
 
-
 
NC_011773  BCAH820_2165  transcriptional regulator, Crp/Fnr family  28.36 
 
 
230 aa  58.9  0.00000006  Bacillus cereus AH820  Bacteria  n/a    normal 
 
 
-
 
NC_009078  BURPS1106A_A0037  Crp/FNR family transcriptional regulator  23.81 
 
 
251 aa  58.9  0.00000007  Burkholderia pseudomallei 1106a  Bacteria  normal  n/a   
 
 
-
 
NC_009075  BURPS668_A0051  cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases  23.81 
 
 
251 aa  58.9  0.00000007  Burkholderia pseudomallei 668  Bacteria  normal  n/a   
 
 
-
 
NC_007650  BTH_II0035  Crp/FNR family transcriptional regulator  23.81 
 
 
251 aa  58.9  0.00000007  Burkholderia thailandensis E264  Bacteria  normal  n/a   
 
 
-
 
NC_011898  Ccel_1678  transcriptional regulator, Crp/Fnr family  22.56 
 
 
234 aa  58.5  0.00000008  Clostridium cellulolyticum H10  Bacteria  normal  n/a   
 
 
-
 
NC_008700  Sama_1799  fumarate/nitrate reduction transcriptional regulator  24.37 
 
 
250 aa  58.5  0.00000008  Shewanella amazonensis SB2B  Bacteria  normal  0.417815  normal  0.180258 
 
 
-
 
NC_006349  BMAA0031  Crp/FNR family transcriptional regulator  23.81 
 
 
251 aa  58.5  0.00000009  Burkholderia mallei ATCC 23344  Bacteria  normal  n/a   
 
 
-
 
NC_009079  BMA10247_A0037  Crp/FNR family transcriptional regulator  23.81 
 
 
251 aa  58.5  0.00000009  Burkholderia mallei NCTC 10247  Bacteria  normal  0.284481  n/a   
 
 
-
 
NC_008835  BMA10229_1464  Crp/FNR family transcriptional regulator  23.81 
 
 
251 aa  58.5  0.00000009  Burkholderia mallei NCTC 10229  Bacteria  normal  0.855917  n/a   
 
 
-
 
NC_008784  BMASAVP1_1184  Crp/FNR family transcriptional regulator  23.81 
 
 
251 aa  58.5  0.00000009  Burkholderia mallei SAVP1  Bacteria  normal  n/a   
 
 
-
 
NC_011772  BCG9842_B3176  transcriptional regulator, Crp/Fnr family  28.5 
 
 
230 aa  57.8  0.0000001  Bacillus cereus G9842  Bacteria  normal  normal 
 
 
-
 
NC_005945  BAS1984  Crp/FNR family transcriptional regulator  28.36 
 
 
230 aa  58.2  0.0000001  Bacillus anthracis str. Sterne  Bacteria  normal  0.513682  n/a   
 
 
-
 
NC_007404  Tbd_2593  Crp/FNR family transcriptional regulator  25.84 
 
 
254 aa  57.8  0.0000001  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  0.431237  normal  0.296758 
 
 
-
 
NC_009485  BBta_5745  transcriptional regulator  28.65 
 
 
243 aa  57.8  0.0000001  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.810963  normal 
 
 
-
 
NC_007435  BURPS1710b_A1540  Crp/FNR family transcriptional regulator  24.32 
 
 
630 aa  57.8  0.0000001  Burkholderia pseudomallei 1710b  Bacteria  normal  0.18142  n/a   
 
 
-
 
NC_007643  Rru_A0496  cyclic nucleotide-binding domain-containing protein  42.11 
 
 
129 aa  58.2  0.0000001  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  n/a   
 
 
-
 
NC_007912  Sde_1464  transcriptional activator Anr  23.03 
 
 
244 aa  57.8  0.0000001  Saccharophagus degradans 2-40  Bacteria  normal  normal 
 
 
-
 
NC_008148  Rxyl_1803  Crp/FNR family transcriptional regulator  28.28 
 
 
249 aa  58.2  0.0000001  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  0.0808632  n/a   
 
 
-
 
NC_004311  BRA0281  transcriptional regulator NnrR  25.43 
 
 
232 aa  57  0.0000002  Brucella suis 1330  Bacteria  normal  n/a   
 
 
-
 
NC_009441  Fjoh_4632  CRP/FNR family transcriptional regulator  25.51 
 
 
234 aa  57.4  0.0000002  Flavobacterium johnsoniae UW101  Bacteria  normal  n/a   
 
 
-
 
NC_007530  GBAA_2132  Crp/FNR family transcriptional regulator  28.36 
 
 
226 aa  57.8  0.0000002  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  n/a   
 
 
-
 
NC_007908  Rfer_1937  Crp/FNR family transcriptional regulator  22.93 
 
 
223 aa  57  0.0000002  Rhodoferax ferrireducens T118  Bacteria  normal  0.155753  n/a   
 
 
-
 
NC_013216  Dtox_2750  transcriptional regulator, Crp/Fnr family  28.65 
 
 
222 aa  57.4  0.0000002  Desulfotomaculum acetoxidans DSM 771  Bacteria  decreased coverage  0.0000000354449  normal  0.602467 
 
 
-
 
NC_007958  RPD_3066  cyclic nucleotide-binding  26.09 
 
 
240 aa  56.6  0.0000003  Rhodopseudomonas palustris BisB5  Bacteria  normal  normal 
 
 
-
 
NC_011138  MADE_02063  transcriptional regulator of aerobic, anaerobic respiration, osmotic balance (CAMP-binding family) protein  22.11 
 
 
222 aa  57  0.0000003  Alteromonas macleodii 'Deep ecotype'  Bacteria  hitchhiker  0.00714534  n/a   
 
 
-
 
NC_013132  Cpin_5556  transcriptional regulator, Crp/Fnr family  22.99 
 
 
352 aa  56.6  0.0000003  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.487576  normal  0.0420739 
 
 
-
 
NC_009952  Dshi_3189  transcriptional regulator  25.29 
 
 
236 aa  56.6  0.0000004  Dinoroseobacter shibae DFL 12  Bacteria  normal  normal 
 
 
-
 
NC_009674  Bcer98_1175  cyclic nucleotide-binding protein  25.58 
 
 
170 aa  56.6  0.0000004  Bacillus cytotoxicus NVH 391-98  Bacteria  normal  0.787015  n/a   
 
 
-
 
NC_013093  Amir_0253  transcriptional regulator, Crp/Fnr family  26.86 
 
 
224 aa  56.2  0.0000004  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_009092  Shew_1993  fumarate/nitrate reduction transcriptional regulator  23.47 
 
 
249 aa  56.2  0.0000004  Shewanella loihica PV-4  Bacteria  normal  0.238952  normal 
 
 
-
 
NC_012803  Mlut_18280  cAMP-binding protein  26.29 
 
 
225 aa  56.2  0.0000004  Micrococcus luteus NCTC 2665  Bacteria  normal  0.186071  n/a   
 
 
-
 
NC_003909  BCE_1572  transcriptional regulator, putative  28.4 
 
 
170 aa  55.8  0.0000005  Bacillus cereus ATCC 10987  Bacteria  normal  0.0434647  n/a   
 
 
-
 
NC_009080  BMA10247_1706  cyclic nucleotide-binding protein  26.15 
 
 
230 aa  55.8  0.0000005  Burkholderia mallei NCTC 10247  Bacteria  normal  0.450772  n/a   
 
 
-
 
NC_009901  Spea_2222  fumarate/nitrate reduction transcriptional regulator  23.56 
 
 
250 aa  55.8  0.0000005  Shewanella pealeana ATCC 700345  Bacteria  normal  0.0665535  n/a   
 
 
-
 
NC_008836  BMA10229_A2895  cyclic nucleotide-binding domain-containing protein  26.15 
 
 
230 aa  55.8  0.0000005  Burkholderia mallei NCTC 10229  Bacteria  normal  0.869141  n/a   
 
 
-
 
NC_007651  BTH_I1801  cyclic nucleotide-binding domain-containing protein  25.13 
 
 
229 aa  56.2  0.0000005  Burkholderia thailandensis E264  Bacteria  normal  n/a   
 
 
-
 
NC_009668  Oant_4381  CRP/FNR family transcriptional regulator  26.9 
 
 
231 aa  56.2  0.0000005  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  n/a   
 
 
-
 
NC_010184  BcerKBAB4_1975  Crp/FNR family transcriptional regulator  27.59 
 
 
230 aa  55.8  0.0000005  Bacillus weihenstephanensis KBAB4  Bacteria  normal  n/a   
 
 
-
 
NC_011899  Hore_09760  putative transcriptional regulator, Crp/Fnr family  22.47 
 
 
226 aa  55.8  0.0000005  Halothermothrix orenii H 168  Bacteria  normal  n/a   
 
 
-
 
NC_008785  BMASAVP1_A2392  cyclic nucleotide-binding domain-containing protein  26.15 
 
 
230 aa  55.8  0.0000005  Burkholderia mallei SAVP1  Bacteria  normal  n/a   
 
 
-
 
NC_009076  BURPS1106A_2752  cyclic nucleotide-binding protein  26.15 
 
 
230 aa  55.8  0.0000005  Burkholderia pseudomallei 1106a  Bacteria  normal  0.339389  n/a   
 
 
-
 
NC_011658  BCAH187_A2279  transcriptional regulator, Crp/Fnr family  27.98 
 
 
230 aa  55.8  0.0000006  Bacillus cereus AH187  Bacteria  normal  0.216294  n/a   
 
 
-
 
NC_013730  Slin_1271  transcriptional regulator, Crp/Fnr family  23.53 
 
 
350 aa  55.8  0.0000006  Spirosoma linguale DSM 74  Bacteria  normal  normal 
 
 
-
 
NC_006348  BMA0619  cyclic nucleotide-binding domain-containing protein  26.15 
 
 
229 aa  55.8  0.0000006  Burkholderia mallei ATCC 23344  Bacteria  normal  n/a   
 
 
-
 
NC_007434  BURPS1710b_2817  cyclic nucleotide-binding domain-containing protein  26.15 
 
 
229 aa  55.8  0.0000006  Burkholderia pseudomallei 1710b  Bacteria  normal  n/a   
 
 
-
 
NC_007954  Sden_3190  cAMP-regulatory protein  25.89 
 
 
211 aa  55.8  0.0000006  Shewanella denitrificans OS217  Bacteria  unclonable  0.00000000000213612  n/a   
 
 
-
 
NC_011831  Cagg_2027  transcriptional regulator, Crp/Fnr family  24.32 
 
 
226 aa  55.8  0.0000006  Chloroflexus aggregans DSM 9485  Bacteria  normal  normal 
 
 
-
 
NC_009074  BURPS668_2695  cyclic nucleotide-binding protein  26.15 
 
 
229 aa  55.8  0.0000006  Burkholderia pseudomallei 668  Bacteria  normal  n/a   
 
 
-
 
NC_009441  Fjoh_2535  CRP/FNR family transcriptional regulator  22.94 
 
 
226 aa  55.5  0.0000007  Flavobacterium johnsoniae UW101  Bacteria  normal  n/a   
 
 
-
 
NC_003910  CPS_1987  fumarate/nitrate reduction transcriptional regulator  23.04 
 
 
239 aa  55.5  0.0000007  Colwellia psychrerythraea 34H  Bacteria  normal  n/a   
 
 
-
 
NC_007984  BCI_0548  cAMP-regulatory protein  24.12 
 
 
210 aa  55.5  0.0000007  Baumannia cicadellinicola str. Hc (Homalodisca coagulata)  Bacteria  normal  0.549862  n/a   
 
 
-
 
NC_011725  BCB4264_A2139  transcriptional regulator, Crp/Fnr family  27.98 
 
 
230 aa  55.5  0.0000008  Bacillus cereus B4264  Bacteria  normal  n/a   
 
 
-
 
NC_010725  Mpop_1302  transcriptional regulator, Crp/Fnr family  27.27 
 
 
254 aa  55.1  0.0000008  Methylobacterium populi BJ001  Bacteria  normal  0.0109091  normal 
 
 
-
 
NC_010506  Swoo_2417  fumarate/nitrate reduction transcriptional regulator  23.47 
 
 
249 aa  55.1  0.0000009  Shewanella woodyi ATCC 51908  Bacteria  normal  0.0646393  decreased coverage  0.000000159166 
 
 
-
 
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