More than 300 homologs were found in PanDaTox collection
for query gene Sde_1108 on replicon NC_007912
Organism: Saccharophagus degradans 2-40



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_007912  Sde_1108  putative methyl-accepting chemotaxis sensory transducer  100 
 
 
539 aa  1098    Saccharophagus degradans 2-40  Bacteria  normal  normal 
 
 
-
 
NC_009439  Pmen_1210  methyl-accepting chemotaxis sensory transducer  43.73 
 
 
540 aa  374  1e-102  Pseudomonas mendocina ymp  Bacteria  normal  normal  0.289047 
 
 
-
 
NC_004578  PSPTO_2526  methyl-accepting chemotaxis protein  41.65 
 
 
559 aa  363  5.0000000000000005e-99  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.591236  n/a   
 
 
-
 
NC_009512  Pput_3621  methyl-accepting chemotaxis sensory transducer  42.47 
 
 
555 aa  357  2.9999999999999997e-97  Pseudomonas putida F1  Bacteria  normal  normal  0.30858 
 
 
-
 
NC_002947  PP_2120  methyl-accepting chemotaxis sensory transducer  42.52 
 
 
555 aa  355  1e-96  Pseudomonas putida KT2440  Bacteria  normal  normal  0.236845 
 
 
-
 
NC_008463  PA14_31400  putative chemotaxis transducer  41.31 
 
 
575 aa  347  4e-94  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  0.307711  hitchhiker  0.0000000000413464 
 
 
-
 
NC_007492  Pfl01_4317  chemotaxis sensory transducer  42.29 
 
 
540 aa  347  4e-94  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal  0.153995 
 
 
-
 
NC_009656  PSPA7_2672  putative chemotaxis transducer  42.08 
 
 
538 aa  344  2e-93  Pseudomonas aeruginosa PA7  Bacteria  normal  0.119833  n/a   
 
 
-
 
NC_010501  PputW619_1637  methyl-accepting chemotaxis sensory transducer  41.81 
 
 
538 aa  343  5.999999999999999e-93  Pseudomonas putida W619  Bacteria  normal  0.662156  normal 
 
 
-
 
NC_010322  PputGB1_1660  methyl-accepting chemotaxis sensory transducer  40.83 
 
 
538 aa  342  9e-93  Pseudomonas putida GB-1  Bacteria  normal  normal  0.170942 
 
 
-
 
NC_008228  Patl_3464  methyl-accepting chemotaxis sensory transducer  38.03 
 
 
525 aa  334  3e-90  Pseudoalteromonas atlantica T6c  Bacteria  normal  n/a   
 
 
-
 
NC_008740  Maqu_2111  methyl-accepting chemotaxis sensory transducer  36.76 
 
 
572 aa  311  2e-83  Marinobacter aquaeolei VT8  Bacteria  normal  0.138456  n/a   
 
 
-
 
NC_007650  BTH_II2191  methyl-accepting chemotaxis protein  31.69 
 
 
666 aa  226  1e-57  Burkholderia thailandensis E264  Bacteria  normal  0.918882  n/a   
 
 
-
 
NC_010506  Swoo_0808  methyl-accepting chemotaxis sensory transducer  36.77 
 
 
541 aa  223  8e-57  Shewanella woodyi ATCC 51908  Bacteria  normal  normal 
 
 
-
 
NC_011901  Tgr7_1963  putative methyl-accepting chemotaxis sensory transducer  40.48 
 
 
637 aa  222  9.999999999999999e-57  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  0.870205  n/a   
 
 
-
 
NC_009831  Ssed_3705  methyl-accepting chemotaxis sensory transducer  36.39 
 
 
541 aa  222  9.999999999999999e-57  Shewanella sediminis HAW-EB3  Bacteria  normal  0.0963791  normal 
 
 
-
 
NC_007510  Bcep18194_A4084  methyl-accepting chemotaxis sensory transducer  31.21 
 
 
511 aa  221  1.9999999999999999e-56  Burkholderia sp. 383  Bacteria  normal  0.51282  normal  0.262349 
 
 
-
 
NC_011138  MADE_02969  Methyl-accepting chemotaxis protein  31.38 
 
 
529 aa  219  7e-56  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  0.0476708  n/a   
 
 
-
 
NC_009075  BURPS668_A0379  methyl-accepting chemotaxis protein  30.78 
 
 
542 aa  218  2e-55  Burkholderia pseudomallei 668  Bacteria  normal  0.366227  n/a   
 
 
-
 
NC_009654  Mmwyl1_0219  methyl-accepting chemotaxis sensory transducer  38.56 
 
 
773 aa  218  2e-55  Marinomonas sp. MWYL1  Bacteria  normal  0.952357  normal 
 
 
-
 
NC_006349  BMAA1872  methyl-accepting chemotaxis protein  30.78 
 
 
542 aa  218  2.9999999999999998e-55  Burkholderia mallei ATCC 23344  Bacteria  normal  n/a   
 
 
-
 
NC_008835  BMA10229_1169  methyl-accepting chemotaxis protein  30.78 
 
 
542 aa  218  2.9999999999999998e-55  Burkholderia mallei NCTC 10229  Bacteria  normal  n/a   
 
 
-
 
NC_009078  BURPS1106A_A0285  methyl-accepting chemotaxis protein  30.78 
 
 
563 aa  218  2.9999999999999998e-55  Burkholderia pseudomallei 1106a  Bacteria  normal  0.877776  n/a   
 
 
-
 
NC_009079  BMA10247_A2146  methyl-accepting chemotaxis protein  30.78 
 
 
542 aa  218  2.9999999999999998e-55  Burkholderia mallei NCTC 10247  Bacteria  normal  n/a   
 
 
-
 
NC_008340  Mlg_1098  methyl-accepting chemotaxis sensory transducer  34.29 
 
 
637 aa  217  2.9999999999999998e-55  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  0.0167241  normal 
 
 
-
 
NC_008463  PA14_43710  putative methyl-accepting chemotaxis transducer  33.25 
 
 
541 aa  217  4e-55  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal 
 
 
-
 
NC_007435  BURPS1710b_A1733  methyl-accepting chemotaxis protein I  30.78 
 
 
661 aa  216  7e-55  Burkholderia pseudomallei 1710b  Bacteria  normal  n/a   
 
 
-
 
NC_009656  PSPA7_3666  chemotaxis transducer  33.01 
 
 
541 aa  216  8e-55  Pseudomonas aeruginosa PA7  Bacteria  normal  0.260935  n/a   
 
 
-
 
NC_011901  Tgr7_0851  methyl-accepting chemotaxis sensory transducer  37.93 
 
 
674 aa  216  9.999999999999999e-55  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  0.244273  n/a   
 
 
-
 
NC_008784  BMASAVP1_0881  methyl-accepting chemotaxis protein  30.78 
 
 
661 aa  216  9.999999999999999e-55  Burkholderia mallei SAVP1  Bacteria  normal  n/a   
 
 
-
 
NC_004347  SO_3582  methyl-accepting chemotaxis protein  37.25 
 
 
541 aa  214  1.9999999999999998e-54  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_008700  Sama_2607  putative methyl-accepting chemotaxis sensory transducer  38.6 
 
 
541 aa  213  5.999999999999999e-54  Shewanella amazonensis SB2B  Bacteria  hitchhiker  0.00122932  normal 
 
 
-
 
NC_007492  Pfl01_4715  chemotaxis sensory transducer  36.16 
 
 
713 aa  213  5.999999999999999e-54  Pseudomonas fluorescens Pf0-1  Bacteria  normal  0.233277  normal  0.171171 
 
 
-
 
NC_011901  Tgr7_0712  putative methyl-accepting chemotaxis sensory transducer  42.16 
 
 
624 aa  213  7.999999999999999e-54  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  n/a   
 
 
-
 
NC_004578  PSPTO_0466  methyl-accepting chemotaxis protein  36.28 
 
 
541 aa  212  1e-53  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_009439  Pmen_3669  methyl-accepting chemotaxis sensory transducer  37.61 
 
 
716 aa  211  2e-53  Pseudomonas mendocina ymp  Bacteria  normal  0.170337  normal 
 
 
-
 
NC_013456  VEA_003896  methyl-accepting chemotaxis protein  35.64 
 
 
545 aa  211  2e-53  Vibrio sp. Ex25  Bacteria  decreased coverage  0.000288698  n/a   
 
 
-
 
NC_003295  RSc1234  methyl-accepting chemotaxis transmembrane protein  31.03 
 
 
514 aa  211  3e-53  Ralstonia solanacearum GMI1000  Bacteria  normal  normal 
 
 
-
 
NC_007005  Psyr_4706  histidine kinase, HAMP region: chemotaxis sensory transducer  36.64 
 
 
541 aa  211  3e-53  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal 
 
 
-
 
NC_010322  PputGB1_1880  methyl-accepting chemotaxis sensory transducer with Cache sensor  36.91 
 
 
628 aa  210  5e-53  Pseudomonas putida GB-1  Bacteria  normal  0.454316  normal 
 
 
-
 
NC_007492  Pfl01_0447  chemotaxis sensory transducer  37.2 
 
 
541 aa  210  5e-53  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal 
 
 
-
 
NC_009512  Pput_3489  methyl-accepting chemotaxis sensory transducer  36.66 
 
 
628 aa  209  9e-53  Pseudomonas putida F1  Bacteria  normal  0.228387  normal 
 
 
-
 
NC_007954  Sden_0712  chemotaxis sensory transducer  38.82 
 
 
541 aa  209  1e-52  Shewanella denitrificans OS217  Bacteria  hitchhiker  0.0000566108  n/a   
 
 
-
 
NC_009439  Pmen_2471  methyl-accepting chemotaxis sensory transducer  35.65 
 
 
425 aa  209  1e-52  Pseudomonas mendocina ymp  Bacteria  normal  0.817651  normal 
 
 
-
 
NC_002947  PP_2249  methyl-accepting chemotaxis transducer  37.57 
 
 
643 aa  208  2e-52  Pseudomonas putida KT2440  Bacteria  normal  0.477129  normal  0.786945 
 
 
-
 
NC_004578  PSPTO_1059  methyl-accepting chemotaxis protein  34.99 
 
 
629 aa  208  2e-52  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_013456  VEA_004004  methyl-accepting chemotaxis protein  35.63 
 
 
663 aa  207  5e-52  Vibrio sp. Ex25  Bacteria  normal  n/a   
 
 
-
 
NC_009092  Shew_0876  methyl-accepting chemotaxis sensory transducer  38.24 
 
 
674 aa  207  6e-52  Shewanella loihica PV-4  Bacteria  normal  normal 
 
 
-
 
NC_007005  Psyr_0905  histidine kinase, HAMP region: chemotaxis sensory transducer  35.84 
 
 
640 aa  206  7e-52  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  0.746842  normal 
 
 
-
 
NC_009783  VIBHAR_01518  hypothetical protein  37.9 
 
 
674 aa  205  1e-51  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_009656  PSPA7_5279  putative chemotaxis transducer  35.23 
 
 
712 aa  204  4e-51  Pseudomonas aeruginosa PA7  Bacteria  normal  0.0493383  n/a   
 
 
-
 
NC_007005  Psyr_0380  histidine kinase, HAMP region: chemotaxis sensory transducer  34.1 
 
 
638 aa  204  5e-51  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal 
 
 
-
 
NC_008345  Sfri_0861  methyl-accepting chemotaxis sensory transducer  34.65 
 
 
542 aa  203  6e-51  Shewanella frigidimarina NCIMB 400  Bacteria  normal  n/a   
 
 
-
 
NC_009457  VC0395_A1488  methyl-accepting chemotaxis protein  35.78 
 
 
672 aa  202  9.999999999999999e-51  Vibrio cholerae O395  Bacteria  normal  0.619219  n/a   
 
 
-
 
NC_009512  Pput_0339  methyl-accepting chemotaxis sensory transducer  36.24 
 
 
541 aa  202  9.999999999999999e-51  Pseudomonas putida F1  Bacteria  normal  0.722367  normal 
 
 
-
 
NC_009439  Pmen_3139  methyl-accepting chemotaxis sensory transducer  35.13 
 
 
640 aa  202  9.999999999999999e-51  Pseudomonas mendocina ymp  Bacteria  normal  0.753261  normal  0.0120166 
 
 
-
 
NC_008228  Patl_3424  methyl-accepting chemotaxis sensory transducer  38.15 
 
 
674 aa  202  9.999999999999999e-51  Pseudoalteromonas atlantica T6c  Bacteria  normal  0.560716  n/a   
 
 
-
 
NC_008463  PA14_61300  putative chemotaxis transducer  34.94 
 
 
712 aa  201  1.9999999999999998e-50  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal  0.862971 
 
 
-
 
NC_007492  Pfl01_2907  chemotaxis sensory transducer  36.81 
 
 
541 aa  201  1.9999999999999998e-50  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal  0.300582 
 
 
-
 
NC_002947  PP_0317  methyl-accepting chemotaxis sensory transducer  36.24 
 
 
541 aa  201  3e-50  Pseudomonas putida KT2440  Bacteria  normal  0.365849  decreased coverage  0.0000342214 
 
 
-
 
NC_009831  Ssed_0961  methyl-accepting chemotaxis sensory transducer  39.04 
 
 
675 aa  201  3.9999999999999996e-50  Shewanella sediminis HAW-EB3  Bacteria  normal  normal 
 
 
-
 
NC_008789  Hhal_0443  methyl-accepting chemotaxis sensory transducer  35.67 
 
 
541 aa  200  3.9999999999999996e-50  Halorhodospira halophila SL1  Bacteria  normal  n/a   
 
 
-
 
NC_009831  Ssed_3856  methyl-accepting chemotaxis sensory transducer  38.03 
 
 
640 aa  200  5e-50  Shewanella sediminis HAW-EB3  Bacteria  normal  normal  0.825575 
 
 
-
 
NC_009438  Sputcn32_1020  methyl-accepting chemotaxis sensory transducer  37.29 
 
 
541 aa  200  5e-50  Shewanella putrefaciens CN-32  Bacteria  hitchhiker  0.00762848  n/a   
 
 
-
 
NC_009483  Gura_0476  methyl-accepting chemotaxis sensory transducer  35.71 
 
 
830 aa  200  5e-50  Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
NC_008321  Shewmr4_2995  methyl-accepting chemotaxis sensory transducer  36.11 
 
 
541 aa  200  7e-50  Shewanella sp. MR-4  Bacteria  hitchhiker  0.00226615  normal  0.196783 
 
 
-
 
NC_008322  Shewmr7_3076  methyl-accepting chemotaxis sensory transducer  36.11 
 
 
541 aa  200  7e-50  Shewanella sp. MR-7  Bacteria  unclonable  0.0000214454  normal  0.805143 
 
 
-
 
NC_011663  Sbal223_3274  methyl-accepting chemotaxis sensory transducer  39.27 
 
 
541 aa  199  7.999999999999999e-50  Shewanella baltica OS223  Bacteria  normal  0.0175031  normal  0.083895 
 
 
-
 
NC_010322  PputGB1_0340  methyl-accepting chemotaxis sensory transducer  35.48 
 
 
541 aa  199  7.999999999999999e-50  Pseudomonas putida GB-1  Bacteria  normal  0.582352  normal 
 
 
-
 
NC_007492  Pfl01_1630  chemotaxis sensory transducer  32.16 
 
 
541 aa  199  1.0000000000000001e-49  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal  0.0250136 
 
 
-
 
NC_009665  Shew185_1084  methyl-accepting chemotaxis sensory transducer  38.98 
 
 
541 aa  198  2.0000000000000003e-49  Shewanella baltica OS185  Bacteria  hitchhiker  0.000100295  n/a   
 
 
-
 
NC_009997  Sbal195_1076  methyl-accepting chemotaxis sensory transducer  38.99 
 
 
673 aa  198  2.0000000000000003e-49  Shewanella baltica OS195  Bacteria  normal  0.450868  normal 
 
 
-
 
NC_009831  Ssed_4463  methyl-accepting chemotaxis sensory transducer  36.96 
 
 
552 aa  198  2.0000000000000003e-49  Shewanella sediminis HAW-EB3  Bacteria  normal  normal  0.43301 
 
 
-
 
NC_011663  Sbal223_3316  methyl-accepting chemotaxis sensory transducer  38.99 
 
 
673 aa  198  2.0000000000000003e-49  Shewanella baltica OS223  Bacteria  normal  normal 
 
 
-
 
NC_009092  Shew_2952  methyl-accepting chemotaxis sensory transducer  38.15 
 
 
541 aa  198  2.0000000000000003e-49  Shewanella loihica PV-4  Bacteria  hitchhiker  0.000751538  normal 
 
 
-
 
NC_013889  TK90_2562  methyl-accepting chemotaxis sensory transducer  35.94 
 
 
671 aa  198  2.0000000000000003e-49  Thioalkalivibrio sp. K90mix  Bacteria  normal  hitchhiker  0.0046581 
 
 
-
 
NC_008577  Shewana3_3173  methyl-accepting chemotaxis sensory transducer  37.07 
 
 
541 aa  198  2.0000000000000003e-49  Shewanella sp. ANA-3  Bacteria  normal  0.0131988  normal 
 
 
-
 
NC_008700  Sama_2822  putative methyl-accepting chemotaxis sensory transducer  38.62 
 
 
673 aa  198  2.0000000000000003e-49  Shewanella amazonensis SB2B  Bacteria  normal  normal  0.428629 
 
 
-
 
NC_008577  Shewana3_3611  methyl-accepting chemotaxis sensory transducer  38.99 
 
 
634 aa  198  2.0000000000000003e-49  Shewanella sp. ANA-3  Bacteria  normal  normal 
 
 
-
 
NC_009052  Sbal_0974  methyl-accepting chemotaxis sensory transducer  38.99 
 
 
673 aa  198  2.0000000000000003e-49  Shewanella baltica OS155  Bacteria  normal  n/a   
 
 
-
 
NC_009665  Shew185_1043  methyl-accepting chemotaxis sensory transducer  38.99 
 
 
673 aa  198  3e-49  Shewanella baltica OS185  Bacteria  normal  0.530938  n/a   
 
 
-
 
NC_010501  PputW619_2263  methyl-accepting chemotaxis sensory transducer  35.82 
 
 
541 aa  197  3e-49  Pseudomonas putida W619  Bacteria  normal  normal 
 
 
-
 
NC_004578  PSPTO_3577  methyl-accepting chemotaxis protein  30.62 
 
 
542 aa  197  4.0000000000000005e-49  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_009997  Sbal195_1117  methyl-accepting chemotaxis sensory transducer  38.98 
 
 
541 aa  197  4.0000000000000005e-49  Shewanella baltica OS195  Bacteria  normal  0.0100073  normal  0.0339889 
 
 
-
 
NC_009052  Sbal_1015  methyl-accepting chemotaxis sensory transducer  38.98 
 
 
541 aa  197  4.0000000000000005e-49  Shewanella baltica OS155  Bacteria  unclonable  0.0000000434326  n/a   
 
 
-
 
NC_011901  Tgr7_1324  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  37.64 
 
 
523 aa  197  4.0000000000000005e-49  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  0.587106  n/a   
 
 
-
 
NC_007492  Pfl01_0124  chemotaxis sensory transducer, Cache sensor  35.36 
 
 
626 aa  197  4.0000000000000005e-49  Pseudomonas fluorescens Pf0-1  Bacteria  normal  0.201174  normal 
 
 
-
 
NC_010501  PputW619_1723  methyl-accepting chemotaxis sensory transducer with Cache sensor  37.69 
 
 
626 aa  197  4.0000000000000005e-49  Pseudomonas putida W619  Bacteria  normal  0.372844  normal 
 
 
-
 
NC_013889  TK90_0949  methyl-accepting chemotaxis sensory transducer  36.47 
 
 
636 aa  196  7e-49  Thioalkalivibrio sp. K90mix  Bacteria  normal  normal  0.0451727 
 
 
-
 
NC_011901  Tgr7_1674  methyl-accepting chemotaxis sensory transducer  32.06 
 
 
543 aa  196  7e-49  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  n/a   
 
 
-
 
NC_007912  Sde_2316  putative methyl-accepting chemotaxis sensory transducer  35.33 
 
 
548 aa  196  8.000000000000001e-49  Saccharophagus degradans 2-40  Bacteria  normal  normal  0.0208981 
 
 
-
 
NC_004578  PSPTO_3680  methyl-accepting chemotaxis protein  35.1 
 
 
676 aa  195  1e-48  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_008740  Maqu_2789  methyl-accepting chemotaxis sensory transducer  37.58 
 
 
545 aa  196  1e-48  Marinobacter aquaeolei VT8  Bacteria  normal  0.888266  n/a   
 
 
-
 
NC_007005  Psyr_3351  histidine kinase, HAMP region: chemotaxis sensory transducer  35.65 
 
 
570 aa  196  1e-48  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  0.0540062  normal  0.0241334 
 
 
-
 
NC_011138  MADE_01731  Methyl-accepting chemotaxis protein  36.36 
 
 
539 aa  195  2e-48  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  n/a   
 
 
-
 
NC_003910  CPS_4964  methyl-accepting chemotaxis protein  37.1 
 
 
545 aa  195  2e-48  Colwellia psychrerythraea 34H  Bacteria  normal  n/a   
 
 
-
 
NC_004578  PSPTO_5553  methyl-accepting chemotaxis protein  35.55 
 
 
640 aa  194  2e-48  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_007005  Psyr_3114  histidine kinase, HAMP region: chemotaxis sensory transducer  33.33 
 
 
541 aa  194  2e-48  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  0.860602  normal 
 
 
-
 
NC_007005  Psyr_3348  histidine kinase, HAMP region: chemotaxis sensory transducer  34.67 
 
 
542 aa  194  2e-48  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  0.946905  normal  0.024921 
 
 
-
 
NC_007912  Sde_0671  putative methyl-accepting chemotaxis sensory transducer  37.18 
 
 
531 aa  195  2e-48  Saccharophagus degradans 2-40  Bacteria  normal  0.178659  hitchhiker  0.000000219808 
 
 
-
 
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