9 homologs were found in PanDaTox collection
for query gene Sama_0105 on replicon NC_008700
Organism: Shewanella amazonensis SB2B



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_008700  Sama_0105  hypothetical protein  100 
 
 
325 aa  679    Shewanella amazonensis SB2B  Bacteria  normal  unclonable  0.00001508 
 
 
-
 
NC_008740  Maqu_0781  WavE lipopolysaccharide synthesis  43.63 
 
 
343 aa  240  2e-62  Marinobacter aquaeolei VT8  Bacteria  normal  0.306369  n/a   
 
 
-
 
NC_009457  VC0395_A2609  hypothetical protein  42.46 
 
 
309 aa  183  3e-45  Vibrio cholerae O395  Bacteria  normal  n/a   
 
 
-
 
NC_009457  VC0395_A2608  hypothetical protein  34.62 
 
 
319 aa  147  3e-34  Vibrio cholerae O395  Bacteria  normal  n/a   
 
 
-
 
NC_009441  Fjoh_0346  WavE lipopolysaccharide synthesis  27.47 
 
 
328 aa  122  9.999999999999999e-27  Flavobacterium johnsoniae UW101  Bacteria  normal  0.0554862  n/a   
 
 
-
 
NC_007005  Psyr_0619  WavE lipopolysaccharide synthesis  29.39 
 
 
347 aa  110  4.0000000000000004e-23  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal  0.693869 
 
 
-
 
NC_004578  PSPTO_0713  hypothetical protein  28.95 
 
 
347 aa  100  3e-20  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_008577  Shewana3_4097  hypothetical protein  29.26 
 
 
296 aa  61.2  0.00000002  Shewanella sp. ANA-3  Bacteria  normal  normal  0.308715 
 
 
-
 
NC_008321  Shewmr4_3893  hypothetical protein  28.72 
 
 
296 aa  60.1  0.00000005  Shewanella sp. MR-4  Bacteria  normal  normal 
 
 
-
 
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