More than 300 homologs were found in PanDaTox collection
for query gene SO_2803 on replicon NC_004347
Organism: Shewanella oneidensis MR-1



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_010506  Swoo_1818  DNA internalization-related competence protein ComEC/Rec2  47.47 
 
 
765 aa  676    Shewanella woodyi ATCC 51908  Bacteria  normal  0.0856288  normal  0.218544 
 
 
-
 
NC_004347  SO_2803  DNA internalization-related competence protein ComEC/Rec2  100 
 
 
769 aa  1558    Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_009092  Shew_1637  DNA internalization-related competence protein ComEC/Rec2  46.7 
 
 
761 aa  635    Shewanella loihica PV-4  Bacteria  normal  0.594703  normal 
 
 
-
 
NC_009052  Sbal_1682  DNA internalization-related competence protein ComEC/Rec2  64.92 
 
 
783 aa  952    Shewanella baltica OS155  Bacteria  normal  n/a   
 
 
-
 
NC_009997  Sbal195_1704  DNA internalization-related competence protein ComEC/Rec2  64.53 
 
 
783 aa  947    Shewanella baltica OS195  Bacteria  normal  0.0286912  normal 
 
 
-
 
NC_009438  Sputcn32_1556  DNA internalization-related competence protein ComEC/Rec2  66.1 
 
 
774 aa  979    Shewanella putrefaciens CN-32  Bacteria  normal  n/a   
 
 
-
 
NC_009665  Shew185_1667  DNA internalization-related competence protein ComEC/Rec2  63.93 
 
 
795 aa  947    Shewanella baltica OS185  Bacteria  normal  n/a   
 
 
-
 
NC_008321  Shewmr4_2423  DNA internalization-related competence protein ComEC/Rec2  77.63 
 
 
773 aa  1184    Shewanella sp. MR-4  Bacteria  normal  normal  0.395966 
 
 
-
 
NC_008322  Shewmr7_2493  DNA internalization-related competence protein ComEC/Rec2  78.02 
 
 
773 aa  1190    Shewanella sp. MR-7  Bacteria  normal  0.105792  normal  0.137051 
 
 
-
 
NC_009831  Ssed_2827  DNA internalization-related competence protein ComEC/Rec2  49.09 
 
 
767 aa  679    Shewanella sediminis HAW-EB3  Bacteria  normal  normal  0.0829289 
 
 
-
 
NC_009901  Spea_1769  DNA internalization-related competence protein ComEC/Rec2  45.33 
 
 
812 aa  672    Shewanella pealeana ATCC 700345  Bacteria  normal  0.479237  n/a   
 
 
-
 
NC_011663  Sbal223_2675  DNA internalization-related competence protein ComEC/Rec2  64.92 
 
 
783 aa  948    Shewanella baltica OS223  Bacteria  normal  0.923098  normal  0.0587505 
 
 
-
 
NC_008577  Shewana3_2585  DNA internalization-related competence protein ComEC/Rec2  78.02 
 
 
773 aa  1209    Shewanella sp. ANA-3  Bacteria  normal  normal  0.13038 
 
 
-
 
NC_008345  Sfri_2389  DNA internalization-related competence protein ComEC/Rec2  42.4 
 
 
831 aa  597  1e-169  Shewanella frigidimarina NCIMB 400  Bacteria  decreased coverage  0.00142105  n/a   
 
 
-
 
NC_008700  Sama_1336  DNA internalization-related competence protein ComEC/Rec2  43.02 
 
 
765 aa  541  9.999999999999999e-153  Shewanella amazonensis SB2B  Bacteria  normal  normal  0.62013 
 
 
-
 
NC_008228  Patl_1779  DNA internalization-related competence protein ComEC/Rec2  31.22 
 
 
762 aa  314  3.9999999999999997e-84  Pseudoalteromonas atlantica T6c  Bacteria  normal  n/a   
 
 
-
 
NC_008709  Ping_0899  DNA internalization-related competence protein ComEC/Rec2  31.3 
 
 
798 aa  308  2.0000000000000002e-82  Psychromonas ingrahamii 37  Bacteria  normal  0.383263  normal  0.740662 
 
 
-
 
NC_007484  Noc_2672  DNA internalization-related competence protein ComEC/Rec2  32.59 
 
 
784 aa  306  1.0000000000000001e-81  Nitrosococcus oceani ATCC 19707  Bacteria  normal  n/a   
 
 
-
 
NC_009457  VC0395_A1470  ComEC/rec2 family protein  32.4 
 
 
752 aa  300  5e-80  Vibrio cholerae O395  Bacteria  normal  n/a   
 
 
-
 
NC_009708  YpsIP31758_2578  hypothetical protein  33.79 
 
 
763 aa  287  5.999999999999999e-76  Yersinia pseudotuberculosis IP 31758  Bacteria  normal  0.0251432  n/a   
 
 
-
 
NC_010465  YPK_2666  hypothetical protein  33.79 
 
 
763 aa  287  7e-76  Yersinia pseudotuberculosis YPIII  Bacteria  normal  n/a   
 
 
-
 
NC_007954  Sden_2200  DNA internalization-related competence protein ComEC/Rec2  42.94 
 
 
873 aa  285  3.0000000000000004e-75  Shewanella denitrificans OS217  Bacteria  normal  n/a   
 
 
-
 
NC_010159  YpAngola_A1958  hypothetical protein  33.64 
 
 
763 aa  284  5.000000000000001e-75  Yersinia pestis Angola  Bacteria  hitchhiker  0.0001218  normal  0.195131 
 
 
-
 
NC_013456  VEA_003988  predicted hydrolase of the metallo-beta-lactamase superfamily  28.5 
 
 
752 aa  280  6e-74  Vibrio sp. Ex25  Bacteria  normal  n/a   
 
 
-
 
NC_002977  MCA2627  DNA internalization-related competence protein ComEC/Rec2  32.38 
 
 
801 aa  280  7e-74  Methylococcus capsulatus str. Bath  Bacteria  normal  n/a   
 
 
-
 
NC_011901  Tgr7_1368  DNA internalization-related competence protein ComEC/Rec2  32.13 
 
 
770 aa  280  7e-74  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  n/a   
 
 
-
 
NC_013421  Pecwa_2040  hypothetical protein  31.38 
 
 
763 aa  280  1e-73  Pectobacterium wasabiae WPP163  Bacteria  normal  n/a   
 
 
-
 
NC_009783  VIBHAR_01534  hypothetical protein  29.56 
 
 
752 aa  279  2e-73  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_009832  Spro_1711  hypothetical protein  31.44 
 
 
737 aa  279  2e-73  Serratia proteamaculans 568  Bacteria  normal  0.0805358  normal 
 
 
-
 
NC_012917  PC1_1768  hypothetical protein  32.22 
 
 
763 aa  278  3e-73  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  0.44185  n/a   
 
 
-
 
NC_008309  HS_1022  recombination protein 2  29.16 
 
 
808 aa  278  4e-73  Haemophilus somnus 129PT  Bacteria  normal  0.949854  n/a   
 
 
-
 
NC_007912  Sde_1702  DNA internalization-related competence protein ComEC/Rec2  30.84 
 
 
839 aa  268  2.9999999999999995e-70  Saccharophagus degradans 2-40  Bacteria  normal  normal  0.0283023 
 
 
-
 
NC_011313  VSAL_II0736  putative competence-related protein  28.25 
 
 
768 aa  265  3e-69  Aliivibrio salmonicida LFI1238  Bacteria  normal  n/a   
 
 
-
 
NC_009436  Ent638_1432  hypothetical protein  32.16 
 
 
754 aa  263  8.999999999999999e-69  Enterobacter sp. 638  Bacteria  normal  0.0687894  normal 
 
 
-
 
NC_007520  Tcr_0957  DNA internalization-related competence protein ComEC/Rec2  30.18 
 
 
841 aa  261  3e-68  Thiomicrospira crunogena XCL-2  Bacteria  normal  n/a   
 
 
-
 
NC_007947  Mfla_2093  DNA internalization-related competence protein ComEC/Rec2  30.96 
 
 
802 aa  258  2e-67  Methylobacillus flagellatus KT  Bacteria  normal  0.35183  normal 
 
 
-
 
NC_007404  Tbd_1759  DNA internalization-related competence protein ComEC/Rec2  30.58 
 
 
778 aa  257  5e-67  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  normal 
 
 
-
 
NC_013422  Hneap_1429  DNA internalization-related competence protein ComEC/Rec2  32.88 
 
 
840 aa  257  7e-67  Halothiobacillus neapolitanus c2  Bacteria  normal  n/a   
 
 
-
 
NC_003910  CPS_2124  DNA internalization-related competence protein ComEC/Rec2  28.91 
 
 
860 aa  253  8.000000000000001e-66  Colwellia psychrerythraea 34H  Bacteria  normal  0.118158  n/a   
 
 
-
 
NC_007614  Nmul_A2506  DNA internalization-related competence protein ComEC/Rec2  30.29 
 
 
766 aa  251  4e-65  Nitrosospira multiformis ATCC 25196  Bacteria  normal  n/a   
 
 
-
 
NC_009801  EcE24377A_1011  hypothetical protein  29.27 
 
 
754 aa  247  6e-64  Escherichia coli E24377A  Bacteria  hitchhiker  0.00460048  n/a   
 
 
-
 
NC_012856  Rpic12D_1059  DNA internalization-related competence protein ComEC/Rec2  30.54 
 
 
839 aa  247  6.999999999999999e-64  Ralstonia pickettii 12D  Bacteria  normal  normal 
 
 
-
 
CP001509  ECD_00917  conserved inner membrane protein  29.61 
 
 
754 aa  245  1.9999999999999999e-63  Escherichia coli BL21(DE3)  Bacteria  normal  0.578469  n/a   
 
 
-
 
CP001637  EcDH1_2730  DNA internalization-related competence protein ComEC/Rec2  29.61 
 
 
754 aa  245  1.9999999999999999e-63  Escherichia coli DH1  Bacteria  normal  0.170872  n/a   
 
 
-
 
NC_010498  EcSMS35_2207  hypothetical protein  29.76 
 
 
754 aa  245  1.9999999999999999e-63  Escherichia coli SMS-3-5  Bacteria  normal  0.01066  normal  0.239269 
 
 
-
 
NC_010468  EcolC_2683  hypothetical protein  29.61 
 
 
754 aa  245  1.9999999999999999e-63  Escherichia coli ATCC 8739  Bacteria  normal  0.692344  normal  0.226957 
 
 
-
 
NC_012892  B21_00924  hypothetical protein  29.61 
 
 
754 aa  245  1.9999999999999999e-63  Escherichia coli BL21  Bacteria  normal  0.630751  n/a   
 
 
-
 
NC_011353  ECH74115_1074  hypothetical protein  28.96 
 
 
754 aa  244  3.9999999999999997e-63  Escherichia coli O157:H7 str. EC4115  Bacteria  normal  0.361238  normal 
 
 
-
 
NC_010513  Xfasm12_0386  DNA uptake protein  30.66 
 
 
825 aa  244  3.9999999999999997e-63  Xylella fastidiosa M12  Bacteria  normal  n/a   
 
 
-
 
NC_010577  XfasM23_0350  DNA internalization-related competence protein ComEC/Rec2  30.51 
 
 
822 aa  243  1e-62  Xylella fastidiosa M23  Bacteria  normal  n/a   
 
 
-
 
NC_012912  Dd1591_2310  hypothetical protein  29.55 
 
 
793 aa  243  1e-62  Dickeya zeae Ech1591  Bacteria  normal  n/a   
 
 
-
 
NC_011094  SeSA_A1097  hypothetical protein  29.6 
 
 
756 aa  241  2.9999999999999997e-62  Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633  Bacteria  normal  normal 
 
 
-
 
NC_007298  Daro_2832  ComEC/Rec2-related protein:DNA internalization-related competence protein ComEC/Rec2  30.29 
 
 
772 aa  241  2.9999999999999997e-62  Dechloromonas aromatica RCB  Bacteria  normal  0.395271  normal 
 
 
-
 
NC_003295  RSc1120  putative transporter DNA uptake transmembrane protein  28.69 
 
 
847 aa  241  5e-62  Ralstonia solanacearum GMI1000  Bacteria  normal  0.0978754  normal  0.511509 
 
 
-
 
NC_007510  Bcep18194_A5417  DNA internalization-related competence protein ComEC/Rec2  30.65 
 
 
830 aa  241  5e-62  Burkholderia sp. 383  Bacteria  normal  0.560238  normal 
 
 
-
 
NC_007492  Pfl01_4178  DNA internalization-like competence protein ComEC/Rec2  30.86 
 
 
747 aa  239  1e-61  Pseudomonas fluorescens Pf0-1  Bacteria  normal  0.145225  normal  0.646667 
 
 
-
 
NC_011083  SeHA_C1081  hypothetical protein  29.75 
 
 
737 aa  239  1e-61  Salmonella enterica subsp. enterica serovar Heidelberg str. SL476  Bacteria  normal  0.30814  normal  0.0474337 
 
 
-
 
NC_012880  Dd703_2209  hypothetical protein  29.79 
 
 
747 aa  238  2e-61  Dickeya dadantii Ech703  Bacteria  normal  0.785174  n/a   
 
 
-
 
NC_010682  Rpic_0963  DNA internalization-related competence protein ComEC/Rec2  28.95 
 
 
840 aa  238  3e-61  Ralstonia pickettii 12J  Bacteria  normal  0.116554  normal  0.0504124 
 
 
-
 
NC_008740  Maqu_1744  DNA internalization-related competence protein ComEC/Rec2  32.1 
 
 
806 aa  237  7e-61  Marinobacter aquaeolei VT8  Bacteria  normal  n/a   
 
 
-
 
NC_008781  Pnap_1205  DNA internalization-related competence protein ComEC/Rec2  31.6 
 
 
845 aa  237  8e-61  Polaromonas naphthalenivorans CJ2  Bacteria  normal  normal  0.285892 
 
 
-
 
NC_011080  SNSL254_A1016  hypothetical protein  29.6 
 
 
737 aa  236  9e-61  Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  normal  0.619127  normal 
 
 
-
 
NC_007948  Bpro_3158  DNA internalization-related competence protein ComEC/Rec2  30.66 
 
 
860 aa  236  2.0000000000000002e-60  Polaromonas sp. JS666  Bacteria  normal  0.0990853  normal  0.446106 
 
 
-
 
NC_011149  SeAg_B0989  hypothetical protein  29.07 
 
 
737 aa  234  4.0000000000000004e-60  Salmonella enterica subsp. enterica serovar Agona str. SL483  Bacteria  normal  n/a   
 
 
-
 
NC_008786  Veis_0403  DNA internalization-related competence protein ComEC/Rec2  29.66 
 
 
878 aa  233  7.000000000000001e-60  Verminephrobacter eiseniae EF01-2  Bacteria  normal  normal  0.105029 
 
 
-
 
NC_011205  SeD_A1048  hypothetical protein  28.77 
 
 
737 aa  233  9e-60  Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853  Bacteria  normal  normal  0.486822 
 
 
-
 
NC_012791  Vapar_3404  DNA internalization-related competence protein ComEC/Rec2  30.43 
 
 
747 aa  233  1e-59  Variovorax paradoxus S110  Bacteria  normal  n/a   
 
 
-
 
NC_010084  Bmul_1159  DNA internalization-related competence protein ComEC/Rec2  30.4 
 
 
819 aa  232  2e-59  Burkholderia multivorans ATCC 17616  Bacteria  normal  hitchhiker  0.00785752 
 
 
-
 
NC_010508  Bcenmc03_2129  DNA internalization-related competence protein ComEC/Rec2  30.58 
 
 
829 aa  231  3e-59  Burkholderia cenocepacia MC0-3  Bacteria  normal  0.326593  normal  0.0900672 
 
 
-
 
NC_007908  Rfer_2476  DNA internalization-related competence protein ComEC/Rec2  30.71 
 
 
766 aa  231  3e-59  Rhodoferax ferrireducens T118  Bacteria  normal  n/a   
 
 
-
 
NC_007973  Rmet_1043  DNA internalization-related competence protein ComEC/Rec2  28.79 
 
 
851 aa  230  8e-59  Cupriavidus metallidurans CH34  Bacteria  normal  normal  0.605949 
 
 
-
 
NC_008390  Bamb_2148  DNA internalization-related competence protein ComEC/Rec2  30.96 
 
 
829 aa  229  2e-58  Burkholderia ambifaria AMMD  Bacteria  normal  0.705314  n/a   
 
 
-
 
NC_008062  Bcen_5966  DNA internalization-related competence protein ComEC/Rec2  29.61 
 
 
829 aa  228  3e-58  Burkholderia cenocepacia AU 1054  Bacteria  normal  0.814009  n/a   
 
 
-
 
NC_008542  Bcen2424_2111  DNA internalization-related competence protein ComEC/Rec2  29.61 
 
 
829 aa  228  3e-58  Burkholderia cenocepacia HI2424  Bacteria  normal  0.261797  n/a   
 
 
-
 
NC_006368  lpp0680  hypothetical protein  28.25 
 
 
735 aa  227  6e-58  Legionella pneumophila str. Paris  Bacteria  n/a    n/a   
 
 
-
 
NC_006369  lpl0663  hypothetical protein  28.78 
 
 
735 aa  227  8e-58  Legionella pneumophila str. Lens  Bacteria  n/a    n/a   
 
 
-
 
NC_010524  Lcho_2608  DNA internalization-related competence protein ComEC/Rec2  29.42 
 
 
833 aa  225  2e-57  Leptothrix cholodnii SP-6  Bacteria  n/a    normal 
 
 
-
 
NC_011992  Dtpsy_0933  DNA internalization-related competence protein ComEC/Rec2  30.06 
 
 
861 aa  222  1.9999999999999999e-56  Acidovorax ebreus TPSY  Bacteria  normal  0.337545  n/a   
 
 
-
 
NC_010551  BamMC406_2021  DNA internalization-related competence protein ComEC/Rec2  31.07 
 
 
833 aa  222  1.9999999999999999e-56  Burkholderia ambifaria MC40-6  Bacteria  normal  normal  0.130557 
 
 
-
 
NC_007005  Psyr_1632  ComEC/Rec2-related protein:DNA internalization-related competence protein ComEC/Rec2  29.31 
 
 
738 aa  221  3.9999999999999997e-56  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal  0.599163 
 
 
-
 
NC_011138  MADE_01854  DNA internalization-related competence protein ComEC/Rec2  30.55 
 
 
867 aa  220  1e-55  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  n/a   
 
 
-
 
NC_009379  Pnuc_1465  DNA internalization-related competence protein ComEC/Rec2  26.33 
 
 
801 aa  218  2.9999999999999998e-55  Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1  Bacteria  normal  n/a   
 
 
-
 
NC_011662  Tmz1t_1990  DNA internalization-related competence protein ComEC/Rec2  29 
 
 
835 aa  215  2.9999999999999995e-54  Thauera sp. MZ1T  Bacteria  normal  n/a   
 
 
-
 
NC_010681  Bphyt_2564  DNA internalization-related competence protein ComEC/Rec2  27.04 
 
 
929 aa  214  4.9999999999999996e-54  Burkholderia phytofirmans PsJN  Bacteria  normal  0.0267783  normal  0.0941772 
 
 
-
 
NC_007951  Bxe_A1569  ComEC/Rec2-related protein  28.82 
 
 
801 aa  214  7e-54  Burkholderia xenovorans LB400  Bacteria  normal  normal  0.304315 
 
 
-
 
NC_010717  PXO_00591  DNA internalization-related competence protein ComEC/Rec2  29.51 
 
 
776 aa  213  9e-54  Xanthomonas oryzae pv. oryzae PXO99A  Bacteria  normal  0.0903265  n/a   
 
 
-
 
NC_007651  BTH_I1890  DNA internalization-related competence protein ComEC/Rec2  27.4 
 
 
845 aa  212  2e-53  Burkholderia thailandensis E264  Bacteria  normal  n/a   
 
 
-
 
NC_008463  PA14_25480  putative competence protein  30.07 
 
 
741 aa  212  2e-53  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal 
 
 
-
 
NC_010002  Daci_5080  DNA internalization-related competence protein ComEC/Rec2  30.07 
 
 
832 aa  211  4e-53  Delftia acidovorans SPH-1  Bacteria  normal  0.411729  normal  0.0251813 
 
 
-
 
NC_008752  Aave_1352  DNA internalization-related competence protein ComEC/Rec2  29.78 
 
 
948 aa  211  6e-53  Acidovorax citrulli AAC00-1  Bacteria  normal  normal  0.0141053 
 
 
-
 
NC_007347  Reut_A1079  ComEC/Rec2-related protein:DNA internalization-related competence protein ComEC/Rec2  28.72 
 
 
800 aa  207  5e-52  Ralstonia eutropha JMP134  Bacteria  normal  0.723493  n/a   
 
 
-
 
NC_010622  Bphy_1443  DNA internalization-related competence protein ComEC/Rec2  27.26 
 
 
843 aa  207  5e-52  Burkholderia phymatum STM815  Bacteria  normal  normal 
 
 
-
 
NC_004578  PSPTO_3848  DNA internalization-related competence protein ComEC/Rec2  30.6 
 
 
738 aa  207  6e-52  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_007434  BURPS1710b_2715  DNA internalization-related competence protein ComEC/Rec2  28.06 
 
 
842 aa  192  2e-47  Burkholderia pseudomallei 1710b  Bacteria  normal  n/a   
 
 
-
 
NC_008836  BMA10229_A3120  DNA internalization-related competence protein ComEC/Rec2  28.21 
 
 
856 aa  191  4e-47  Burkholderia mallei NCTC 10229  Bacteria  normal  n/a   
 
 
-
 
NC_008785  BMASAVP1_A2198  DNA internalization-related competence protein ComEC/Rec2  28.21 
 
 
856 aa  191  4e-47  Burkholderia mallei SAVP1  Bacteria  normal  0.975554  n/a   
 
 
-
 
NC_009080  BMA10247_1471  DNA internalization-related competence protein ComEC/Rec2  28.21 
 
 
856 aa  191  4e-47  Burkholderia mallei NCTC 10247  Bacteria  normal  0.300879  n/a   
 
 
-
 
NC_006348  BMA1693  DNA internalization-related competence protein ComEC/Rec2  28.17 
 
 
842 aa  191  5e-47  Burkholderia mallei ATCC 23344  Bacteria  normal  0.891985  n/a   
 
 
-
 
NC_009943  Dole_0767  DNA internalization-related competence protein ComEC/Rec2  27.36 
 
 
840 aa  178  3e-43  Desulfococcus oleovorans Hxd3  Bacteria  normal  n/a   
 
 
-
 
NC_007963  Csal_1585  DNA internalization-related competence protein ComEC/Rec2  28.3 
 
 
758 aa  176  9.999999999999999e-43  Chromohalobacter salexigens DSM 3043  Bacteria  normal  0.882312  n/a   
 
 
-
 
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